mRNA_H-elongata_contig20321.5768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20321.5768.1
Unique NamemRNA_H-elongata_contig20321.5768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20321.5768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20321contigH-elongata_contig20321:1570..1980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.4513934-UTR-H-elongata_contig20321:1569..15991622930142.4513934-UTR-H-elongata_contig20321:1569..1599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20321 1570..1599 +
1691679297.2878387-UTR-H-elongata_contig20321:1569..15991691679297.2878387-UTR-H-elongata_contig20321:1569..1599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20321 1570..1599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.4706633-CDS-H-elongata_contig20321:1599..19801622930142.4706633-CDS-H-elongata_contig20321:1599..1980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20321 1600..1980 +
1691679297.296347-CDS-H-elongata_contig20321:1599..19801691679297.296347-CDS-H-elongata_contig20321:1599..1980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20321 1600..1980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20321.5768.1prot_H-elongata_contig20321.5768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20321 1600..1980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20321.5768.1

>prot_H-elongata_contig20321.5768.1 ID=prot_H-elongata_contig20321.5768.1|Name=mRNA_H-elongata_contig20321.5768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MEAGRCQVEATVAEVGGARQYCDDSDVVSADVGADNSAASCEAGTVTVSS
ANTDTATFRALPGSERPFAFRTFSGGHSQGLNGLRDLDSHAAAGLLKHCP
FALEDTPQAIAFWRRTLDLAVVALGPL
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mRNA from alignment at H-elongata_contig20321:1570..1980+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20321.5768.1 ID=mRNA_H-elongata_contig20321.5768.1|Name=mRNA_H-elongata_contig20321.5768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig20321:1570..1980+ (Himanthalia elongata Himel1 dioecious)
CAGGCTGCCCACCAGCCGGGGAGATTGTCCATGGAGGCTGGAAGGTGCCA
GGTGGAGGCAACGGTGGCAGAGGTTGGTGGCGCTCGACAGTATTGTGATG
ATAGCGATGTTGTTTCTGCTGATGTTGGTGCTGATAACAGTGCTGCGAGC
TGTGAGGCTGGGACCGTTACTGTTTCCTCAGCCAACACCGACACCGCCAC
GTTTCGAGCGCTCCCTGGCAGCGAGCGCCCTTTCGCGTTTCGTACCTTCT
CTGGTGGACATTCTCAAGGCCTTAATGGTCTCCGTGATCTCGATTCCCAC
GCCGCCGCCGGCTTGCTGAAGCACTGCCCCTTTGCGCTGGAGGACACGCC
ACAAGCAATCGCCTTTTGGCGGCGAACGCTCGACCTGGCCGTCGTTGCCC
TCGGGCCGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig20321:1570..1980+

>mRNA_H-elongata_contig20321.5768.1 ID=mRNA_H-elongata_contig20321.5768.1|Name=mRNA_H-elongata_contig20321.5768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig20321:1570..1980+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGCTGGAAGGTGCCAGGTGGAGGCAACGGTGGCAGAGGTTGGTGG
CGCTCGACAGTATTGTGATGATAGCGATGTTGTTTCTGCTGATGTTGGTG
CTGATAACAGTGCTGCGAGCTGTGAGGCTGGGACCGTTACTGTTTCCTCA
GCCAACACCGACACCGCCACGTTTCGAGCGCTCCCTGGCAGCGAGCGCCC
TTTCGCGTTTCGTACCTTCTCTGGTGGACATTCTCAAGGCCTTAATGGTC
TCCGTGATCTCGATTCCCACGCCGCCGCCGGCTTGCTGAAGCACTGCCCC
TTTGCGCTGGAGGACACGCCACAAGCAATCGCCTTTTGGCGGCGAACGCT
CGACCTGGCCGTCGTTGCCCTCGGGCCGCTCATGGAGGCTGGAAGGTGCC
AGGTGGAGGCAACGGTGGCAGAGGTTGGTGGCGCTCGACAGTATTGTGAT
GATAGCGATGTTGTTTCTGCTGATGTTGGTGCTGATAACAGTGCTGCGAG
CTGTGAGGCTGGGACCGTTACTGTTTCCTCAGCCAACACCGACACCGCCA
CGTTTCGAGCGCTCCCTGGCAGCGAGCGCCCTTTCGCGTTTCGTACCTTC
TCTGGTGGACATTCTCAAGGCCTTAATGGTCTCCGTGATCTCGATTCCCA
CGCCGCCGCCGGCTTGCTGAAGCACTGCCCCTTTGCGCTGGAGGACACGC
CACAAGCAATCGCCTTTTGGCGGCGAACGCTCGACCTGGCCGTCGTTGCC
CTCGGGCCGCTC
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