mRNA_H-elongata_contig20320.5767.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20320.5767.1
Unique NamemRNA_H-elongata_contig20320.5767.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.040e-18
Identity = 50/139 (35.97%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHD------FCLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
            GY+  + +G CD+ENNNE CGYDGGDCC CT     ++    +++ +       C+DPN+ CVN                             +DI   +V      NC S     +GN  CDM+NN+E C YDGGDCC
Sbjct:  125 GYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVND----------------------------DDITLDIV-----ENCDS---VAVGNGFCDMDNNNEACAYDGGDCC 227          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.160e-15
Identity = 50/143 (34.97%), Postives = 66/143 (46.15%), Query Frame = 1
Query:    1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTV-----ETWSNIYIYEHYHDF-----CLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
            GY+ G+ DG C +ENNNE CGYDGGDCC CT V     + W        Y        C+DP++ CV+                  DE                V V +  +C + +   IG+  C+M+NN+E C YDGGDCC
Sbjct:  135 GYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDD-----------------DE----------------VTVGMVESCDTVS---IGDGYCNMDNNNEACAYDGGDCC 241          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.290e-14
Identity = 55/165 (33.33%), Postives = 71/165 (43.03%), Query Frame = 1
Query:    1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHDFCLDPNSGCV-----------NTXXXXXXXXXXXXXXSGGD----ESSSLLCVNP--------------NDICYSLVAVTLHSNCTSGNIEGI---GNSECDMENNSEGCLYDGGDCC 399
            GYI  I DG CD  NNNEECG+DGGDCC CT   ++   Y    Y   C DPN+ C            +                GGD      SS  C++P              +D   + +  T  S+  SG  +G+    + +CD  NN+  C YDGGDCC
Sbjct:  225 GYIYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSY--YYSCSSYSMDCQDPNANCTTPSPTPYCPFASDGYCDSYYNTEDCDWDGGDCCAYGCSSTTCLDPIYGCDSITTSYGDSDDSTSTFITYTTSSD-DSGCFDGVWAVSDGKCDSGNNNAACDYDGGDCC 386          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.530e-13
Identity = 49/151 (32.45%), Postives = 60/151 (39.74%), Query Frame = 1
Query:    1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTV-----ETWSNIYIYEHYHDF-------------CLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
            GY+ G+ DG CDD NNNE CGYDGGDCC CT V     + W                         C+DPN+ CVN                G                       +  NC      G+G+  C+ +NN+E C YDGGDCC
Sbjct:  170 GYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVAPPANDDWDXXXXXXXXXXXXXXXXGACGGGFACIDPNAACVNDDDITVGMDTPSNKC-GWRXXXXXXXXXXXXXXXXXXXXDMIENCEYP--WGVGDGYCNQQNNNELCAYDGGDCC 317          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.180e-11
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query:   16 IRDGECDDENNNEECGYDGGDCCGCTTVE----TWSNIYIYEHYHDF-CLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
            I DG CD +NN EEC YDGGDCC CT       T  +  +      F C+DP++ CVN                  D+ ++ L     + C              GNI  + + +CD  NN+E C YDGGDCC
Sbjct:  104 IGDGNCDKDNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVND-----------------DDFTAFLPEVVKETC-------------GGNIVHLADGDCDQINNNEECGYDGGDCC 206          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.500e-11
Identity = 45/128 (35.16%), Postives = 59/128 (46.09%), Query Frame = 1
Query:   16 IRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHDFCLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
            + DG CDD+NN EEC +DGGDCC  + V+      +   Y D C DP S   N                       L+C++P     +      +  C    +E IGN  CD E N+E CL+DGGDCC
Sbjct:  172 LSDGHCDDDNNVEECSFDGGDCCVDSCVDAKYTCGVT--YRDQC-DPQSSDCNLR---------------------LICLDPVYKTPAPTPTLFNRTCP---VEDIGNGRCDDEYNNEFCLFDGGDCC 272          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.970e-11
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    7 IAGIRDGECDDENNNEECGYDGGDCCGCTTVETWS--NIYIYEHYHDFCLDPNSGCVN 174
            IA + DG CD+ENNNE CGYDGGDCC CT V + S     +   Y   C+DPN+ C +
Sbjct:   13 IASVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNASCFD 70          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.870e-10
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYE-HYHDF-CLDPNSGC 168
            GY++GI +G CD  NN EECGYDGGDCC CT    + + Y+    Y  F C DPN+ C
Sbjct:  168 GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASC 225          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.980e-10
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYE-HYHDF-CLDPNSGC 168
            GY++GI +G CD  NN EECGYDGGDCC CT    + + Y+    Y  F C DPN+ C
Sbjct:  530 GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASC 587          
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.670e-10
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHDFCLDPNSGCVN 174
            GY+A I DG C DENNNE C YDGGDCC CT V+ +   Y   +    C+DP++ CV+
Sbjct:   69 GYVASIGDGFCSDENNNEVCDYDGGDCCECTCVDAF---YPCGYVAFACIDPSAACVD 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G0S4_ECTSI5.040e-1835.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE5.160e-1534.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6K0_9PHAE6.290e-1433.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI1.530e-1332.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE2.180e-1134.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB5_9PHAE2.500e-1135.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI82_ECTSI4.970e-1151.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE1.870e-1051.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXR2_9PHAE1.980e-1051.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK5_9PHAE2.670e-1051.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20320contigH-elongata_contig20320:55..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue7.3e-12
Seed eggNOG ortholog2880.D7FX77
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.3914754-CDS-H-elongata_contig20320:54..2761622930142.3914754-CDS-H-elongata_contig20320:54..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20320 55..276 -
1691679297.2690315-CDS-H-elongata_contig20320:54..2761691679297.2690315-CDS-H-elongata_contig20320:54..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20320 55..276 -
1622930142.405293-CDS-H-elongata_contig20320:357..5371622930142.405293-CDS-H-elongata_contig20320:357..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20320 358..537 -
1691679297.2793183-CDS-H-elongata_contig20320:357..5371691679297.2793183-CDS-H-elongata_contig20320:357..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20320 358..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20320.5767.1prot_H-elongata_contig20320.5767.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20320 55..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20320.5767.1

>prot_H-elongata_contig20320.5767.1 ID=prot_H-elongata_contig20320.5767.1|Name=mRNA_H-elongata_contig20320.5767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHDFCL
DPNSGCVNTRECDYDGGDCCDCSSGGDESSSLLCVNPNDICYSLVAVTLH
SNCTSGNIEGIGNSECDMENNSEGCLYDGGDCCN
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mRNA from alignment at H-elongata_contig20320:55..537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20320.5767.1 ID=mRNA_H-elongata_contig20320.5767.1|Name=mRNA_H-elongata_contig20320.5767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig20320:55..537- (Himanthalia elongata Himel1 dioecious)
GGGTACATCGCAGGGATACGGGATGGTGAGTGCGATGATGAAAACAACAA CGAAGAATGTGGCTATGACGGGGGAGATTGCTGTGGCTGCACCACCGTGG AAACTTGGAGCAACATTTACATCTACGAGCATTATCATGATTTTTGTCTT GACCCAAACTCGGGCTGTGTCAACACGCGGGTTAACGATTATCCCAACTG CACCGGCGGATATATCCCATACATAGGGGATGACAGCTGCGATTGGGAGA ACAACAATGAGGAGTGTGACTACGATGGGGGAGATTGCTGTGATTGCAGC AGTGGCGGCGATGAATCTTCTTCCTTGCTCTGTGTGAACCCGAATGACAT TTGTTACAGTCTCGTCGCAGTCACTCTACACTCGAACTGCACAAGCGGAA ATATCGAAGGTATAGGGAACAGCGAGTGTGATATGGAGAATAACAGCGAG GGATGTCTTTACGACGGGGGCGATTGCTGTAAT
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Coding sequence (CDS) from alignment at H-elongata_contig20320:55..537-

>mRNA_H-elongata_contig20320.5767.1 ID=mRNA_H-elongata_contig20320.5767.1|Name=mRNA_H-elongata_contig20320.5767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig20320:55..537- (Himanthalia elongata Himel1 dioecious)
GGGTACATCGCAGGGATACGGGATGGTGAGTGCGATGATGAAAACAACAA
CGAAGAATGTGGCTATGACGGGGGAGATTGCTGTGGCTGCACCACCGTGG
AAACTTGGAGCAACATTTACATCTACGAGCATTATCATGATTTTTGTCTT
GACCCAAACTCGGGCTGTGTCAACACGCGGGGGTACATCGCAGGGATACG
GGATGGTGAGTGCGATGATGAAAACAACAACGAAGAATGTGGCTATGACG
GGGGAGATTGCTGTGGCTGCACCACCGTGGAAACTTGGAGCAACATTTAC
ATCTACGAGCATTATCATGATTTTTGTCTTGACCCAAACTCGGGCTGTGT
CAACACGCGGGAGTGTGACTACGATGGGGGAGATTGCTGTGATTGCAGCA
GTGGCGGCGATGAATCTTCTTCCTTGCTCTGTGTGAACCCGAATGACATT
TGTTACAGTCTCGTCGCAGTCACTCTACACTCGAACTGCACAAGCGGAAA
TATCGAAGGTATAGGGAACAGCGAGTGTGATATGGAGAATAACAGCGAGG
GATGTCTTTACGACGGGGGCGATTGCTGTAATGAGTGTGACTACGATGGG
GGAGATTGCTGTGATTGCAGCAGTGGCGGCGATGAATCTTCTTCCTTGCT
CTGTGTGAACCCGAATGACATTTGTTACAGTCTCGTCGCAGTCACTCTAC
ACTCGAACTGCACAAGCGGAAATATCGAAGGTATAGGGAACAGCGAGTGT
GATATGGAGAATAACAGCGAGGGATGTCTTTACGACGGGGGCGATTGCTG
TAAT
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