mRNA_H-elongata_contig20320.5767.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 5.040e-18 Identity = 50/139 (35.97%), Postives = 67/139 (48.20%), Query Frame = 1
Query: 1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHD------FCLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
GY+ + +G CD+ENNNE CGYDGGDCC CT ++ +++ + C+DPN+ CVN +DI +V NC S +GN CDM+NN+E C YDGGDCC
Sbjct: 125 GYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVND----------------------------DDITLDIV-----ENCDS---VAVGNGFCDMDNNNEACAYDGGDCC 227
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 5.160e-15 Identity = 50/143 (34.97%), Postives = 66/143 (46.15%), Query Frame = 1
Query: 1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTV-----ETWSNIYIYEHYHDF-----CLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
GY+ G+ DG C +ENNNE CGYDGGDCC CT V + W Y C+DP++ CV+ DE V V + +C + + IG+ C+M+NN+E C YDGGDCC
Sbjct: 135 GYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDD-----------------DE----------------VTVGMVESCDTVS---IGDGYCNMDNNNEACAYDGGDCC 241
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 6.290e-14 Identity = 55/165 (33.33%), Postives = 71/165 (43.03%), Query Frame = 1
Query: 1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHDFCLDPNSGCV-----------NTXXXXXXXXXXXXXXSGGD----ESSSLLCVNP--------------NDICYSLVAVTLHSNCTSGNIEGI---GNSECDMENNSEGCLYDGGDCC 399
GYI I DG CD NNNEECG+DGGDCC CT ++ Y Y C DPN+ C + GGD SS C++P +D + + T S+ SG +G+ + +CD NN+ C YDGGDCC
Sbjct: 225 GYIYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSY--YYSCSSYSMDCQDPNANCTTPSPTPYCPFASDGYCDSYYNTEDCDWDGGDCCAYGCSSTTCLDPIYGCDSITTSYGDSDDSTSTFITYTTSSD-DSGCFDGVWAVSDGKCDSGNNNAACDYDGGDCC 386
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.530e-13 Identity = 49/151 (32.45%), Postives = 60/151 (39.74%), Query Frame = 1
Query: 1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTV-----ETWSNIYIYEHYHDF-------------CLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
GY+ G+ DG CDD NNNE CGYDGGDCC CT V + W C+DPN+ CVN G + NC G+G+ C+ +NN+E C YDGGDCC
Sbjct: 170 GYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVAPPANDDWDXXXXXXXXXXXXXXXXGACGGGFACIDPNAACVNDDDITVGMDTPSNKC-GWRXXXXXXXXXXXXXXXXXXXXDMIENCEYP--WGVGDGYCNQQNNNELCAYDGGDCC 317
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 2.180e-11 Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query: 16 IRDGECDDENNNEECGYDGGDCCGCTTVE----TWSNIYIYEHYHDF-CLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
I DG CD +NN EEC YDGGDCC CT T + + F C+DP++ CVN D+ ++ L + C GNI + + +CD NN+E C YDGGDCC
Sbjct: 104 IGDGNCDKDNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVND-----------------DDFTAFLPEVVKETC-------------GGNIVHLADGDCDQINNNEECGYDGGDCC 206
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 2.500e-11 Identity = 45/128 (35.16%), Postives = 59/128 (46.09%), Query Frame = 1
Query: 16 IRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHDFCLDPNSGCVNTXXXXXXXXXXXXXXSGGDESSSLLCVNPNDICYSLVAVTLHSNCTSGNIEGIGNSECDMENNSEGCLYDGGDCC 399
+ DG CDD+NN EEC +DGGDCC + V+ + Y D C DP S N L+C++P + + C +E IGN CD E N+E CL+DGGDCC
Sbjct: 172 LSDGHCDDDNNVEECSFDGGDCCVDSCVDAKYTCGVT--YRDQC-DPQSSDCNLR---------------------LICLDPVYKTPAPTPTLFNRTCP---VEDIGNGRCDDEYNNEFCLFDGGDCC 272
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 4.970e-11 Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 7 IAGIRDGECDDENNNEECGYDGGDCCGCTTVETWS--NIYIYEHYHDFCLDPNSGCVN 174
IA + DG CD+ENNNE CGYDGGDCC CT V + S + Y C+DPN+ C +
Sbjct: 13 IASVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNASCFD 70
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.870e-10 Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYE-HYHDF-CLDPNSGC 168
GY++GI +G CD NN EECGYDGGDCC CT + + Y+ Y F C DPN+ C
Sbjct: 168 GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASC 225
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.980e-10 Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYE-HYHDF-CLDPNSGC 168
GY++GI +G CD NN EECGYDGGDCC CT + + Y+ Y F C DPN+ C
Sbjct: 530 GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASC 587
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 2.670e-10 Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHDFCLDPNSGCVN 174
GY+A I DG C DENNNE C YDGGDCC CT V+ + Y + C+DP++ CV+
Sbjct: 69 GYVASIGDGFCSDENNNEVCDYDGGDCCECTCVDAF---YPCGYVAFACIDPSAACVD 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20320.5767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20320.5767.1 >prot_H-elongata_contig20320.5767.1 ID=prot_H-elongata_contig20320.5767.1|Name=mRNA_H-elongata_contig20320.5767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp GYIAGIRDGECDDENNNEECGYDGGDCCGCTTVETWSNIYIYEHYHDFCLback to top mRNA from alignment at H-elongata_contig20320:55..537- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20320.5767.1 ID=mRNA_H-elongata_contig20320.5767.1|Name=mRNA_H-elongata_contig20320.5767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig20320:55..537- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20320:55..537- >mRNA_H-elongata_contig20320.5767.1 ID=mRNA_H-elongata_contig20320.5767.1|Name=mRNA_H-elongata_contig20320.5767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig20320:55..537- (Himanthalia elongata Himel1 dioecious)back to top |