mRNA_H-elongata_contig20307.5763.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20307.5763.1
Unique NamemRNA_H-elongata_contig20307.5763.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: D7FVJ5_ECTSI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 4.630e-65
Identity = 134/270 (49.63%), Postives = 164/270 (60.74%), Query Frame = 2 
Query:   41 AKESEERAREQSRLRRHERKKKQQIAFKTGVWDRCFYQVPGKQRFCAQYRSPDSTEYCATHMESSPSLDKGKRIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSG-----SLETCGGAGGEGSGCAIRDNGAGDTDTDAHLDEAFVRDVVSRVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            +K  EE+ R  SR RR ERKK Q  A KTGVWDRC Y+VPGK R+CAQ+RS  S  +C THM  +   +KGKR+PCPVDPNHTVFE+QL SH+KICN+ +++A+M   PYYS+GINSG       E                           LD+AFV D++SRV+AAHR  VGE+ TEVLDPP+V ALHR    PA  D G G                       GPS   + VEMGAGKG LGQ+I+ A+P + +TMVERS+VRRK
Sbjct:    9 SKSIEEQTRADSRRRRQERKKAQLGALKTGVWDRCLYRVPGKGRYCAQHRSKHSASFCGTHMGET--AEKGKRVPCPVDPNHTVFEQQLSSHVKICNLALQQARMVAQPYYSEGINSGPPLLPGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDAFVVDLLSRVEAAHRDLVGEIPTEVLDPPEVQALHRGLVGPAGGDNGHGEN---------------------GPSV--LHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRK 253
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: A0A6H5KUX2_9PHAE (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 6.870e-55
Identity = 131/304 (43.09%), Postives = 166/304 (54.61%), Query Frame = 2 
Query:   29 DTHHAKESEERAREQSRLRRHERKKKQQIAFKTGVWDRCFYQVPGKQRFCAQYRSPDSTEYCATHMESSPSLDKGKRIPCPVDPNHTVFEKQLGSHIK--------------------------ICNVLVREAQMKELPYYSKGINSGSLETCG---------GAGGEGSGCAIRDNGAGDTDTDAHLDEAFVRDVVSRVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            D   +K  +E+ R  SR RR ERK  Q  A +TGVW+RC Y+VPGK R+CAQ+    S  +C THM  +   +KGKR+PCPVDPNHTVFE+QL SH+K                          +CN+ +++A+M   PYYS+GINSG     G              G    +   GA      A LD+AFV D++SRV+AAHR  VGE+ TEVLDPP+V ALHR    P    G  G                    G  GPS   + VEMGAGKG LGQ+I+ A+P + +TMVERS+VRRK
Sbjct:    5 DAPRSKSIDEQTRADSRRRRQERKNAQLEALQTGVWERCLYRVPGKARYCAQH----SASFCGTHMGET--AEKGKRVPCPVDPNHTVFEQQLSSHVKRSRRVSPQAPPAAPYRTMWHVGSTTKVCNLALQQARMVTQPYYSEGINSGPPLLPGEXXXXXXXXXXXXRGDVAVVAAVGAA-----ADLDDAFVVDLLSRVEAAHRHLVGEIPTEVLDPPEVQALHRGLVGPTGAGGESGH-------------------GEDGPSV--LHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRK 276
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: A0A2P4X027_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X027_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.380e-29
Identity = 88/252 (34.92%), Postives = 126/252 (50.00%), Query Frame = 2 
Query:  128 GVWDRCFYQVPGKQRFCAQYRSPDSTEYCATHM-ESSPSLDKG---------KRIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSGSLETCGGAGGEGSGCAIRDNGAGDTDTDAH------LDEAFVRDVVSRVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            G WDRC ++V  K R+C   R P S  +C  H+ +S  ++ K          +R+PCPVD +HTV+E  L  H+ +CN +     MK+LPYYS  INSG+  +  G      G A +D                 L     +D+  R+ AA+ A VGEL+ E L       L  +     K   G      RH+ QQASI+GHM K  LL  S +  FVE+GAG+G L  A++  YP++   +++R+  R K
Sbjct:   30 GQWDRCMFKVVRKNRYCNISRVPGSL-FCGNHLPDSDVAVSKKSQKFKAATRRRVPCPVDASHTVYEYDLAKHVLVCNRVKDADTMKKLPYYSHNINSGTHCSDRGDNTTSEGIAEKDEKHSTPSAQEQQGIIDKLQAIDFKDLRERIDAAYAACVGELKLEKLHHKCCDQLFEE-----KKKAGASKSVLRHIEQQASIIGHMEKVRLLEDSNA-AFVELGAGRGMLSLALAQMYPDSLYVLIDRAHTRGK 274
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: A0A835ZI09_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI09_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.920e-28
Identity = 80/253 (31.62%), Postives = 126/253 (49.80%), Query Frame = 2 
Query:  125 TGVWDRCFYQVPGKQRFCAQYRSPDSTEYCATHMESSPSLDKGKRIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSG-----SLETCGGAGGEGSGCAIRDNGAGDTDTD------------------AHLDEAFVRDVVSRVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVE 814
            TG WD C   V  K R+C+Q R  D+ +YC  H +     D   RIPCPVD  H++ +  L  H+KIC      + +    +YSKGINSG     S           +G A  D  +  T  D                    +   ++ D+++R++ A+  HVG +    L PP+   L    +   K+D     ++ RH++QQ+SI+GHM +RG++ P   + ++EMGAG+G LG A+ + YP++ I +V+
Sbjct:   56 TGDWDGCRMWVTRKNRYCSQPRKRDA-QYCGLHQQEV--FDAESRIPCPVDATHSIDKANLQWHLKICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADA-VKMD----LKRMRHIVQQSSIIGHMQRRGMVQPE--HCYIEMGAGRGLLGLALGLTYPDSDILLVD 298
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: H3GHR1_PHYRM (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR1_PHYRM)

HSP 1 Score: 119 bits (298), Expect = 2.410e-27
Identity = 97/286 (33.92%), Postives = 142/286 (49.65%), Query Frame = 2 
Query:   50 SEERAREQSRLRRHERKKKQQIAFKTGV-WDRCFYQVPGKQRFCAQYRSPDSTEYCATHMESSPSLDKGK----------RIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSGSLETCGGAGGEGSGCAIRDNGAGDTDTD-----AHLDEAFVRDVVS--------RVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            +E+ AR+  R RR    K+ +   K G  WDRC ++V  K RFC   R P S  +C  H+  S +    K          R+PCPVD +HTV+E  L  H+ +CN +     MK+L YYS  INSGS  +      EGS  A  +  AGD + +     A   +  +  +V+        R++AA+ + VGEL  E L       L  +     K   G      RH+ QQASI+GHM +  LL  S +  FVE+GAG+G L  A++  +P++   +++R+  R K
Sbjct:    8 AEQLARDAQRKRR----KQAKTDAKNGAQWDRCMFKVVRKNRFCNISRVPGSL-FCGNHLPDSDAAVSSKSQKFKAATRRRVPCPVDASHTVYEFDLAKHVLVCNRVKDADAMKKLAYYSHNINSGSHSS---VKEEGS-TASSEEPAGDKENEHSEPSAQEQQGIIDKLVAIDFADLRKRIEAAYDSCVGELLLEKLQHKCCDQLFEE-----KKKAGASKSVLRHIEQQASIIGHMEQAKLLQDSNA-AFVELGAGRGMLSLALAQMFPDSLYVLIDRAHTRGK 278
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: W7TT10_9STRA (tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT10_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.100e-26
Identity = 79/249 (31.73%), Postives = 127/249 (51.00%), Query Frame = 2 
Query:  137 DRCFYQVPGKQRFCAQYRSPDST------------EYCATHMESSPSLDKG--KRIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSGSLETCGGAGGEGSGCAIRDNGAGDTDTDAHLDEAFVRDVVSRVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKV--DGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            DRC + +  K RFC   R P S             E CA    S     +G  +R+PCP+D NHTV+E++L +H+++CNV   +  +++ P+Y + INSGSL   G                        LD   V  +++R++          R E ++  Q+ +    +++ A +         K RH++QQAS++ H+ +RGLLG  ++   VE+GAG+G LG A+  A+PEA++ +VER+ VR K
Sbjct:   36 DRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPG-------------------LNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVE--QITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARST--CVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLK 261
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: A0A3R7K0L9_9STRA (tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0L9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.820e-26
Identity = 92/287 (32.06%), Postives = 139/287 (48.43%), Query Frame = 2 
Query:   50 SEERAREQSRLRRHERKKKQQIAFKTGVWDRCFYQVPGKQRFCAQYRSPDSTEYCATHMESSPSLDKGK----------RIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSGS-------LETCGGAGGEGSGCAIRDNGAGDTDTDAHLDEAFVRDVVS--------RVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            +E+ AR+  R RR   K+ +  A + G WDRC ++V  K R+C   R P S ++C  H+  + +    K          R+PCPVD +HTV+E  L  H+ +CN +     MK LPYYS  INSGS       +E       +      ++N    +   A   +  +  +VS        R+ AA+ + VGEL  E     ++H       L  K   G      RH+ QQASI+GHM +  LL  S +  FVE+GAG+G L  A++   P++   +++R+  R K
Sbjct:    8 AEQLARDTQRKRR---KQAKADAKEGGQWDRCMFKVVRKNRYCNISRVPGS-QFCGNHLPDNDAAISKKSQKFKAASRRRVPCPVDASHTVYEYDLAKHVLVCNRVKDADIMKRLPYYSHNINSGSHCTEKNSVEAPPSEVSDQENVGGKENSNEHSTPSAQEQQGIIDKLVSIDFADLRKRIDAAYESCVGELALE-----KLHHKCCDQLLQEKKAAGASKSVLRHIEQQASIIGHMEQAELLEKSNA-AFVELGAGRGMLSLALAQMLPDSLYVLIDRAHTRGK 284
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: A0A225W5E4_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W5E4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.960e-26
Identity = 99/290 (34.14%), Postives = 140/290 (48.28%), Query Frame = 2 
Query:   26 MDTHHAKESEERAREQSRLRRHERKKKQQIAFKTGVWDRCFYQVPGKQRFCAQYRSPDSTEYCATHMESSPSLDKGK----------RIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSG----------SLETCGGAGGEGSGCAIRDNGAGDTDTDAHLDEAFVRDVVSRVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            MDT   + +E+ +R+  R RR + K +   A   G WDRC ++V  K R+C   R   S  +C  H+  S +    K          R+PCPVD +HTV+E  L  H+ +CN +     MK+LPYYS  INSG          S E       E S  + ++   G  D    +D A +R    R+  A+ A VGEL  E L       L  +     K   G      RH+ QQASI+GHM K  LL  S +  FVE+GAG+G L  A++  YP++   +++R+  R K
Sbjct:    1 MDT--KRSAEQLSRDVQRKRRKQAKAE---AKDGGEWDRCMFKVVRKNRYCNISRVSGSL-FCGNHLPDSDASKSKKSQKFKAATRRRVPCPVDSSHTVYEYDLAKHVLVCNRVKDADTMKKLPYYSHNINSGTHCSDKTESSSTEEXXXXXXEHSAPSAQEQ-QGIIDKLQAIDFADLR---KRIDTAYAACVGELTLEKLHHKCCDQLFEE-----KKKAGASKSVLRHIEQQASIIGHMEKATLLEDSNA-AFVELGAGRGMLSLALAQMYPDSLYVLIDRAHTRGK 274
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: A0A024UNE5_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.950e-26
Identity = 84/280 (30.00%), Postives = 130/280 (46.43%), Query Frame = 2 
Query:   95 RKKKQQIAFKTGVWDRCFYQVPGKQRFCAQYRSPDSTEYCATHMESSPSLDKGK----------RIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSGSLETCGGAGGEGSGCAIRDNGAGDTDTDAHLDEAFVRD-----------------------VVSRVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            RK+++  A K G W +C +++  K R C   R   S  YC  H+     +   K          R+PC +DP+HTV+   L  H+ ICN L     M+ LP+YS+ INSG+              A  D+ A   D   H+D+A V +                       + +++K+A+ A+V  + T+ LD     AL     L  K   G      RH+ QQASI+GHM  + LL PS  +++ E+GAG+  L  A++  YP +   +++R+  R K
Sbjct:   24 RKREKSKAMKDGEWTQCMFKLKRKNRLCNVARVEGSL-YCGNHIVDEEGVTSQKTKKHKQELCKRVPCTLDPSHTVYLFDLKKHLVICNKLKEAEAMRSLPFYSENINSGTH------------AAGSDHVAPPVDEALHVDDANVDEHSCPSSAKQASLFQTLAAMDFNSLAAKIKSAYDANVPSIPTQKLDHAACTAL-----LKEKQAAGANHSVLRHIQQQASILGHMEAKHLLRPS--HVYCELGAGRAMLSLALTQIYPSSPFVLIDRAGSRGK 283
[Close]
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Match: A0A0P1AMP5_PLAHL (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMP5_PLAHL)

HSP 1 Score: 116 bits (291), Expect = 9.870e-26
Identity = 93/280 (33.21%), Postives = 136/280 (48.57%), Query Frame = 2 
Query:   80 LRRHERKKKQQIAFKTGVWDRCFYQVPGKQRFCAQYRSPDSTEYCATHMESSPSLDKGK----------RIPCPVDPNHTVFEKQLGSHIKICNVLVREAQMKELPYYSKGINSG--SLETCGGAGGEGSGCAIRDNGAGDTDTDAHLD-EAFVRDVV-------------SRVKAAHRAHVGELRTEVLDPPQVHALHRQ-DEL-PAKVDGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAISVAYPEAKITMVERSAVRRK 835
            ++R  RK+ +  A   G W RC ++V  K+R+C   R P S  +C  H+  S  L   K          R+PCPVD +HTV+E  L  H++ICN +     MK LP+YS  INSG  S++                    + D + HL+  A V+  +             SR++ A+ + VGEL +E       H  H   DEL   K   G      RH+ QQASI+GHM K  LL  +  + FVE+GAG+G L  A++  YP++   +++R+  R K
Sbjct:   14 IQRRRRKQTKIKANDDGQWGRCMFKVLRKKRYCNIARVPGSL-FCGNHLPESDVLSCKKSQKFKFSTRRRVPCPVDKSHTVYEYDLAKHVQICNRVKDADVMKNLPFYSHNINSGLHSIDK------------KEKTFEEEVDENGHLNLSAKVQQSIIDRLQAIDFANLRSRIEVAYASCVGELASE-------HLHHNCCDELFETKKTSGSSNSVLRHIKQQASIIGHMDKVKLLA-NPDSAFVELGAGRGLLSLALAQTYPDSLFVLIDRAHTRGK 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20307.5763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVJ5_ECTSI4.630e-6549.63tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A6H5KUX2_9PHAE6.870e-5543.09tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A2P4X027_9STRA4.380e-2934.92tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phyto... [more]
A0A835ZI09_9STRA1.920e-2831.62tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Tribo... [more]
H3GHR1_PHYRM2.410e-2733.92tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phyto... [more]
W7TT10_9STRA1.100e-2631.73tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Nanno... [more]
A0A3R7K0L9_9STRA1.820e-2632.06tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Phyto... [more]
A0A225W5E4_9STRA1.960e-2634.14tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phyto... [more]
A0A024UNE5_9STRA7.950e-2630.00tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Aphan... [more]
A0A0P1AMP5_PLAHL9.870e-2633.21tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Plasm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20307contigH-elongata_contig20307:55..6423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.9
Seed ortholog evalue1.2e-56
Seed eggNOG ortholog2880.D7FVJ5
Preferred nameTRMT13
KEGG koko:K15446
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0009451,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG2811@1,KOG2811@2759
EC2.1.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons6
Model size835
Cds size810
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930141.9440913-CDS-H-elongata_contig20307:54..1901622930141.9440913-CDS-H-elongata_contig20307:54..190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 55..190 -
1691679297.0613344-CDS-H-elongata_contig20307:54..1901691679297.0613344-CDS-H-elongata_contig20307:54..190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 55..190 -
1622930141.9648323-CDS-H-elongata_contig20307:403..4871622930141.9648323-CDS-H-elongata_contig20307:403..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 404..487 -
1691679297.0731623-CDS-H-elongata_contig20307:403..4871691679297.0731623-CDS-H-elongata_contig20307:403..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 404..487 -
1622930141.9769733-CDS-H-elongata_contig20307:1076..12011622930141.9769733-CDS-H-elongata_contig20307:1076..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 1077..1201 -
1691679297.0829592-CDS-H-elongata_contig20307:1076..12011691679297.0829592-CDS-H-elongata_contig20307:1076..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 1077..1201 -
1622930141.9933107-CDS-H-elongata_contig20307:1683..18511622930141.9933107-CDS-H-elongata_contig20307:1683..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 1684..1851 -
1691679297.0945334-CDS-H-elongata_contig20307:1683..18511691679297.0945334-CDS-H-elongata_contig20307:1683..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 1684..1851 -
1622930142.0111704-CDS-H-elongata_contig20307:2498..26311622930142.0111704-CDS-H-elongata_contig20307:2498..2631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 2499..2631 -
1691679297.1025307-CDS-H-elongata_contig20307:2498..26311691679297.1025307-CDS-H-elongata_contig20307:2498..2631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 2499..2631 -
1622930142.0242374-CDS-H-elongata_contig20307:6234..63981622930142.0242374-CDS-H-elongata_contig20307:6234..6398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 6235..6398 -
1691679297.1107454-CDS-H-elongata_contig20307:6234..63981691679297.1107454-CDS-H-elongata_contig20307:6234..6398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20307 6235..6398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.0396802-UTR-H-elongata_contig20307:6398..64231622930142.0396802-UTR-H-elongata_contig20307:6398..6423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20307 6399..6423 -
1691679297.1233609-UTR-H-elongata_contig20307:6398..64231691679297.1233609-UTR-H-elongata_contig20307:6398..6423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20307 6399..6423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20307.5763.1prot_H-elongata_contig20307.5763.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20307 55..6398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20307.5763.1

>prot_H-elongata_contig20307.5763.1 ID=prot_H-elongata_contig20307.5763.1|Name=mRNA_H-elongata_contig20307.5763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
MDTHHAKESEERAREQSRLRRHERKKKQQIAFKTGVWDRCFYQVPGKQRF
CAQYRSPDSTEYCATHMESSPSLDKGKRIPCPVDPNHTVFEKQLGSHIKI
CNVLVREAQMKELPYYSKGINSGSLETCGGAGGEGSGCAIRDNGAGDTDT
DAHLDEAFVRDVVSRVKAAHRAHVGELRTEVLDPPQVHALHRQDELPAKV
DGGPGFRKGRHVLQQASIVGHMVKRGLLGPSTSNIFVEMGAGKGALGQAI
SVAYPEAKITMVERSAVRRK
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mRNA from alignment at H-elongata_contig20307:55..6423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20307.5763.1 ID=mRNA_H-elongata_contig20307.5763.1|Name=mRNA_H-elongata_contig20307.5763.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6369bp|location=Sequence derived from alignment at H-elongata_contig20307:55..6423- (Himanthalia elongata Himel1 dioecious)
CCAGCCGTTGCCCTAACAGACCGAAATGGATACACATCATGCCAAGGAAA
GCGAGGAGAGGGCAAGGGAACAGTCAAGGCTAAGGCGTCATGAGCGAAAA
AAGAAGCAGCAAATCGCTTTCAAGACTGGTGTCTGGGATCGTTGCTTCTA
TCAAGTCCCCGGGAAACAGAGATTCTGTGCCCAGTATAGGTGAGAGCAAC
CACGTCGGTACGCTAACCTTTACCTTCAGTGAAGAAGAAGTGGAACCTAG
CAGGTGGCTTGTGTGGCCATCATATGAAGAAGAATATGAGTCAACCGAAT
TTGGTTGCCTCCTGCTTGTGGTCAGCTGAGCAGGGAAAATGAATTTGGTC
TCACGAGACGGGTTCAGTCGTCCCGTCCCGCGTCAGCCCGATCATTCTCC
CAACCCAGACTGAATCTGTTGCGTACTCCCGGTATCCTCTCGATCATCTC
GCTTTCCGCGACGGCGTCCATCTCTACCGTCAACCACCATCGGACCAATC
CAGAGTTCATCAGGTCACGCAATTGCGTACCAATGGCGTTCACCACCGGG
AGTCACATCATACCCAACAAGTGGAGAATGATTATTCGTGGGTACACAAA
ATTCGACATACTATATACAGTATACTATATACAGTATACTTCACGGTCGA
CGAGGGAAAGAGACTGCTGAATCCTTCTCGCGATAAAAATGATGATAAGG
CAAGCACCGCAGAAGGAAGGCGGAGAAATCATGTGTGACCTTCCTCCTGT
ATGACCCTATCCTATCCCGGCTGGTGCGTCCACAAGTACAGTAGTTAGTA
GTCTGACGTCCAGAATAAATGGGATGACAACGCAACACACACACACACAC
ACACACACACACACGATTATCTCACGTGGGATACGACACGGGGCGCTCAT
TGGTCACCTTTAATTAACGTACCCCAACTTGATGACTCCACAGCGAGAAG
AATGTAAAGGCTACTGGGAGCCAATATCCCTTGTACTCTTGTGGAGGTGC
TAAGTGAAAGTGGCGGCCTCGCATGGCCGCTTTATCCTGACGATACTATT
CAAGTGCATCTCCCCGAATGCTCCAATGTACAGTCAGTACTTGAATTGTA
CGAAGTACAGTAGCTATCTTCCTAACTTTTTGTTCGAGGCCTGTCGGGGT
ACGTTTGGCACGATTCGGTCTGCAATATCGCACCAGGCAAAGTGTCTTGT
GCGTACTAAACTGCTGTACCATCCTTCTTCCTTCATGTTATTTTTGTTCA
GAGAAACACAAGCGGGGTGTTGGGAATATAGGCTTAATCGATATAATATG
AGTACAACACCAACATACACCCTATATTTAGTATAACAGTAGAGTTAGTA
TCGACAGGCCGGAGCCGGTAAACGAGACCCGGGGACAAAATTGTACTGTC
CCCGGGTTTCATCTCCAATTTTTCCGGGAATAGTTCAGTGCACGAGAACC
GGGGAAACACAGGCCCTGTTCTGCTTTCAGGCAGCTGCTGACCCAACAGC
TACAACTGCTGACCCAACTCGACCCTAACATCAAATAAAAGTTTACAGAC
CCAACCGCTACAACTGCTGACCCAACCCGACCCTAACACTAACCCAAACC
CACACACAAATCAAAGTTTAATGCTGCTGACCCAAGACAATATTATGAGC
CTTTGTGCAGCACTGTCGAGTGGTAGCAGCTGGAAACCTTGATTTGAGTG
TGGACGCTTTTAGACTTGACCCTAACCCACACCCAAATCACAGCTGCTGG
CCCAACCGCTAGAACTGCTAACCCAACCCGACCCTAACACAAACCCACGC
TCAAATCAAAGTTTACAGACCTGTTAGGGTCGGGTTGGGGTTGGGTCAGT
AGTTGTGACGGTTTGGTCTGCAGCTGTAAACTTTGAACACACACCCAAAT
CACAGTTTACAGATCCGTTAGGGTCGGGTTGGGTCAGCAGTTATAGCGGT
TGGATCGGCAGTTAGTTGTAGCCTGTGGAAGATGACCTATGTTTTTATTA
TATAGGGTCATCTTCCATAGGTTGTAGCGGTTAGGTCTGTAAAATTTGAT
TTGGGTGTGGGGTTGGGTTAGTGTTAGGGTCGAGTTGGGTCAGCAGTTGT
AGCTGTTGGGTCAGCAGCTGCCTGAAAGCAGCGCAGGGACTGTGCTTCCC
CAGGTCTCGTGTACTAAACGATCCCCGAAACAATTGGAGATGAAACCCGG
GGGCAGTACGATTTTGTCCCCGGGTCTCGTTTGTTGACTCCCTCGACAGG
CGTTAATTCTAGGCCTTCGATTCCGCGTGGAACTCCCTAGCGACTTGATT
CCGCTATTTTAATCTGCGAGCACTGGCCACAAAGATTCTCCACAAGATGG
CCTCGCTGACTTGGCCTTGCTATATACCTCCACGGCAAAATATGAGAAAT
TCATAAGGCGGGCAACCCTTGTGGACGCGCCAGCCGGGGTCACACATGAT
TTCTCCACCTTCCTTCTGTGGTGCTTGCCTTATCATCATTTTTATCGCGA
GAAGGATTCAGCAGTCCCTTTCCCTCGTCGACCGTGAAGTATACTGTATA
TAGTATACTGTAGCAAGTGGAGAACGAATATTTCGTGGGAACACAAGATT
CGACATACTATATTACAGTATACTGTATATAGTATATTGTATATAGTATA
TATTATACTGTATATAGTATACTGTATATAGTATGTCGAATCTTGTGTTC
CCACGAAATATTCGTTCTCCACTTGCTGATGTAAGAAAAAATCCCAGTTC
GTGTGACTGGTTCGAGATTCGAACTCACGTCCCAGCGTCAGAAGGTTTCG
AGGTTACCAACTGAACTGAACCACCGGGGCAACCCTGAGGATCATTGTCC
CTGTACAGCCAGCAACCTCGTAACTTTGGGTGAAGTTTAGGGCACCAGTG
GTCTGTCTCTACATCGATCTTTCCAAGAGAAAGCAAAGTCGATGTACTTA
GACGAGCAGCTTTCACAGGTCCAGGGCCTGAAATTCGACCCACCCTGAAC
TCTGAACTTTCCCGGATGGGCTCGAAGCGAATCCTTCTCGTTTGGTGTCT
GCCACACGGATGGTTGGGTTTTCCCCATAGGGTAGAAGGGAAAAGCCCGG
ATAGGTTTCGCGCGGTCTTGTTGTTGTGTCTAGCGCCGCGATGCGTCGAA
GCGTGCCGGAAGGCCATATCTCAACAACTCTGCTGTGCTTAATATTTGTC
CCAGCGGATCAAGACCCCGATATGTACCCCGATATGTACCCCGATATGTC
GCCCGATATGTACCCCCGATATGTCGCCCGGCACCGCACACCGCACTGTA
CACTGCTCAGCGATGGAATTATATAGAAAGTTGGCGTTCGTTTCGTGTGA
TATAGACCAGTGAGGCGTGCCAGAAGATCGACTATAATACCCGAACCTTG
GACCTTGAGGCAAAATCTCCGGGCAAATAGTCCCGGCGGTCCAACGATTT
ATAATGTACCAGCCGATGCATCTTAGGTTGTCCTCTAATAAAGCACTATT
AAAGCGCTGTCAATGGCTACGGTCTTTCGCGGAGCCTCACGAGCCGTCTC
TTTCCAATACACTGGTTTCTCCTGGCAGCCGAAGCACGACACACTTTGTA
TCCAATAAATGAACGGTAGCCAGAAGAGAGAACGCCGTTTGTGAATGTCA
AAGTGCATTTTTACGTTGGGGCTTGATCGTAGGTGAAGTAAAGTAAGTGC
ATCTACAGAGTGGCATTCATACATTCAACGGCAGTCAGTGAAAGCTAGCT
GTACATAACAGTCCAGTGTCCCCGTCGTCCCCTTGGGCGTAGGAGCCCCG
ACAGCACCGAGTACTGCGCTACGCACATGGAATCGAGCCCTTCCCTGGAT
AAGGGCAAGAGGATCCCCTGTCCCGTGGATCCCAACCACACGGTCTTCGA
GAAGCAGCTCGGCTCTCACATTAAGGTGGGTAAAAGGTTGGGGTAGAAGT
TTCTTAGAAACTCTGAGCGTCCACACCTTCTTCGCACCGGGTGCGATGAA
ACTCTAGGGGGCCTTGCGTACCGTCGGGTTGGAATGGATACAGTGGCTGT
CGGTGCAACACCGCCAGGTAGGACTCACTCACCGGTAGTCGCATTGGATC
ACTTGTATCACGTCGGGTTGTCGGACCTATCCTTGTCGGGTGGTCGTAGA
TGTATGGGATTTTCGACAGGGCGGTGTTGTCGGTTGACGATCGTTCGAGA
GGATGGGTTATCGTGCTGCGCGCATTATCAGCAAAGAGCAGGGCTCACAC
GGGCACGCGACACAACTCATTTGCGCTATGCCGCACAAAATCAGCACAAC
GCGTTATCTCTCTCATGTTGTTGTTGGTGGTGGTCACGCATTTAGCAGAA
GGTCAGCAGTAGATGTATCTGCTGGTGGTAAGGCATTCATGAATGGGTTA
ACTAACAGGTGGGAGGCCATGAACTAGCGGGTGGGACGCGGGGGTTGTTC
GGGCGAGCGGTTTGCACCTTGCTCCTGAGCACTCCACTAGCGCATATTTC
GCCAACCCCTCGCTACTGCTATTTATTGTTGCTGTTGTATTTGCTGCCTT
GCCGTTGGAGGTCTTATTCCAGATCTGCAACGTACTGGTGCGGGAGGCTC
AGATGAAGGAACTGCCGTACTACTCGAAGGGCATCAACTCGGGATCGTTG
GAAACGTGTGGTGGGGCGGGGGGTGAGGGGAGCGGCTGCGCGATCCGCGA
TAACGGAGCAGGAGACACGGACACGGATGCCCATCTGGACGTGGGTATCT
CGCCACCTACACTGACTTGAGTCGGCCCGCAGAAACACGGTCGAAATCGT
CTAACGCGATGGGAAAGGTTGACGTCTTTTTATTCCCTCGGCGACGAGTG
CTACCATGCGCCTCTTGCAAAACTGCTGCGAAAGACGCGCGACATCCTCT
GTTCGCTGGTTTCCGTTCTTTCGTATGCATTCCACTATTGTTTTGGAAAT
AAAGAAATAAAACAATATGACGAGGCGTGTGCTTCCTTGTTGCGCCAAGA
CAGCATAGGGTAACGGTTTCATGGGTGACTTTGGGTCGCTCGCCCTCTAA
GGCAAGGAACAGTTGTCTGTATATCGACGAGTCGTACCACAGCTACAAAC
GTGATCTAGCATATCTTCCTTTTTCCAAGGCGTGGAGCTTCCGCTGGATT
ATGTGGGGTACAGCCCGAAAAACACCCTGCCTACCCCGGTCATGGATTCC
CCCCTGTTATTTCTCGGAAAAGGAGGCATTCGTACGCGACGTCGTCTCTC
GGGTGAAGGCAGCGCACCGCGCCCATGTGGGAGAACTGAGAACCGAGGTA
CTCGATCCGCCCCAGGTTCACGCGCTCCACAGGCAAGATGAATTGCCGTA
GTGTTGGTGGGAAAGAGAGTATCTCGGCAGGGTACGTGAAGTAGCATGTA
TTGCCGGAAACACTGCACATAGATCGCACGGTCCTTGGGCTAGAATACTG
GAACATCGATGTCTGAAGCAAGGGCTTGGCGTGATTGGAGCGCGAGTCAA
AAATTGGTCACCTCTTCTCTCGGTTCACGGGGTATATTATGAACTGCTGG
CAAAGGCTAATAATGTTCTTTAGCAGCGTTGCGCCAGCGGTGTTTGAATC
CCGGGAGCTCGAGCGGTTGAGTCAAATTACCGTGGTTCTTCTGCTTGGCG
CATGCGCATTGTAAACGCCCTCGCCTCTTGAATGGTTTGTTGCCTAAAGC
GTCTAAGGTGCATGTATATGTGCAAAGGATAAAAGCGCTCGTTGCAGTAG
ATCTTTGCCTTGTCAGGCCTAGTTCCGGGAGCCTGTTATACCTGCCGTGC
CGTGTTTAACTGGTGTCGGTCTAGGAATATATACTGACCCCTGTTTCGAA
AGGTGGGAGTTTGAGACGACAGGGTGTTTGCCGCCATCAAGGATTTCCAT
GCATTTCCCCTCTTCCTCGCTTTATGTTCGGTACAGGGCGAAGGTGGATG
GCGGACCGGGTTTCCGCAAGGGAAGGCATGTCTTGCAACAGGCTTCTATC
GTGGGCCACATGGTCAAAAGGTGTGTTTCCCACTTCGGTTTGTGAAATAC
CATATACGTTTCGGCTGTTCTATGACTGCGCTATGTTAAGCAGGGTCGTT
GAACCCGCTCAATTTCCAAATTTCAGCAGCATAAGAGTTATTTCCTTCCC
GTGATTTCAGACACCAAACAGCCGTTCCGCCTCTCCAAGAACGTCATTTT
TCGTGGCTGCCGCGCTGTCGCCGCCCGAACCAGGGGACTTCTTGGCCCCA
GCACGAGCAATATTTTCGTCGAGATGGGCGCGGGCAAGGGTGCTCTCGGA
CAAGCCATCTCCGTGGCGTACCCCGAGGCAAAAATAACCATGGTCGAGCG
GTCCGCGGTCAGGAGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig20307:55..6423-

>mRNA_H-elongata_contig20307.5763.1 ID=mRNA_H-elongata_contig20307.5763.1|Name=mRNA_H-elongata_contig20307.5763.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig20307:55..6423- (Himanthalia elongata Himel1 dioecious)
ATGGATACACATCATGCCAAGGAAAGCGAGGAGAGGGCAAGGGAACAGTC
AAGGCTAAGGCGTCATGAGCGAAAAAAGAAGCAGCAAATCGCTTTCAAGA
CTGGTGTCTGGGATCGTTGCTTCTATCAAGTCCCCGGGAAACAGAGATTC
TGTGCCCAGTATAGATGGATACACATCATGCCAAGGAAAGCGAGGAGAGG
GCAAGGGAACAGTCAAGGCTAAGGCGTCATGAGCGAAAAAAGAAGCAGCA
AATCGCTTTCAAGACTGGTGTCTGGGATCGTTGCTTCTATCAAGTCCCCG
GGAAACAGAGATTCTGTGCCCAGTATAGGAGCCCCGACAGCACCGAGTAC
TGCGCTACGCACATGGAATCGAGCCCTTCCCTGGATAAGGGCAAGAGGAT
CCCCTGTCCCGTGGATCCCAACCACACGGTCTTCGAGAAGCAGCTCGGCT
CTCACATTAAGGAGCCCCGACAGCACCGAGTACTGCGCTACGCACATGGA
ATCGAGCCCTTCCCTGGATAAGGGCAAGAGGATCCCCTGTCCCGTGGATC
CCAACCACACGGTCTTCGAGAAGCAGCTCGGCTCTCACATTAAGATCTGC
AACGTACTGGTGCGGGAGGCTCAGATGAAGGAACTGCCGTACTACTCGAA
GGGCATCAACTCGGGATCGTTGGAAACGTGTGGTGGGGCGGGGGGTGAGG
GGAGCGGCTGCGCGATCCGCGATAACGGAGCAGGAGACACGGACACGGAT
GCCCATCTGGACATCTGCAACGTACTGGTGCGGGAGGCTCAGATGAAGGA
ACTGCCGTACTACTCGAAGGGCATCAACTCGGGATCGTTGGAAACGTGTG
GTGGGGCGGGGGGTGAGGGGAGCGGCTGCGCGATCCGCGATAACGGAGCA
GGAGACACGGACACGGATGCCCATCTGGACGAGGCATTCGTACGCGACGT
CGTCTCTCGGGTGAAGGCAGCGCACCGCGCCCATGTGGGAGAACTGAGAA
CCGAGGTACTCGATCCGCCCCAGGTTCACGCGCTCCACAGGCAAGATGAA
TTGCCGAGGCATTCGTACGCGACGTCGTCTCTCGGGTGAAGGCAGCGCAC
CGCGCCCATGTGGGAGAACTGAGAACCGAGGTACTCGATCCGCCCCAGGT
TCACGCGCTCCACAGGCAAGATGAATTGCCGGCGAAGGTGGATGGCGGAC
CGGGTTTCCGCAAGGGAAGGCATGTCTTGCAACAGGCTTCTATCGTGGGC
CACATGGTCAAAAGGGCGAAGGTGGATGGCGGACCGGGTTTCCGCAAGGG
AAGGCATGTCTTGCAACAGGCTTCTATCGTGGGCCACATGGTCAAAAGGG
GACTTCTTGGCCCCAGCACGAGCAATATTTTCGTCGAGATGGGCGCGGGC
AAGGGTGCTCTCGGACAAGCCATCTCCGTGGCGTACCCCGAGGCAAAAAT
AACCATGGTCGAGCGGTCCGCGGTCAGGAGAAAGGGGACTTCTTGGCCCC
AGCACGAGCAATATTTTCGTCGAGATGGGCGCGGGCAAGGGTGCTCTCGG
ACAAGCCATCTCCGTGGCGTACCCCGAGGCAAAAATAACCATGGTCGAGC
GGTCCGCGGTCAGGAGAAAG
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