mRNA_H-elongata_contig203032.5761.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203032.5761.1
Unique NamemRNA_H-elongata_contig203032.5761.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: D7G169_ECTSI (Pyridoxal kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G169_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.370e-16
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:  124 FTGTGDLAAALLLAWTHKLPGDLAGALERVAGSMRAVLARTHSQG 258
            FTGTGDLAAALLLAWT +LPGDLAGALERVAG+MRAVL RTH+QG
Sbjct:  388 FTGTGDLAAALLLAWTRRLPGDLAGALERVAGTMRAVLRRTHAQG 432
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BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: A0A7S0E9U4_9EUKA (Pyridoxal kinase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E9U4_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 2.940e-10
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   73 DEAFDLYRITFSRLPQKFTGTGDLAAALLLAWTHKLPG--DLAGALERVAGSMRAVLARTHSQG 258
            D     +R+   RL Q FTGTGDL AALLLAW+ +LPG  +L   LE+   +++AVL RTH+ G
Sbjct:   17 DGVLKQWRLRLPRLDQDFTGTGDLVAALLLAWSDRLPGAVNLPLVLEKAGATVQAVLQRTHASG 80
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BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: C1MUU3_MICPC (Pyridoxal kinase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUU3_MICPC)

HSP 1 Score: 63.5 bits (153), Expect = 5.750e-10
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   91 YRITFSRLPQKFTGTGDLAAALLLAWTHKLPGDLAGALERVAGSMRAVLART 246
            ++IT  R+P  FTGTGDL AALLLAW+ KLPG L  A ER   S++ VL +T
Sbjct:  199 FKITVPRIPSYFTGTGDLCAALLLAWSDKLPGQLGRAAERAVASLQGVLRKT 250
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BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: A0A0A7ACX8_9CHLO (Pyridoxal kinase (Fragment) n=1 Tax=Micromonas sp. CCMP2099 TaxID=1442574 RepID=A0A0A7ACX8_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-8
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   91 YRITFSRLPQKFTGTGDLAAALLLAWTHKLPGDLAGALERVAGSMRAVLART 246
            +RI   R+P  FTGTGDL AALLLAW+ K+P  L  A E+   S++ VL RT
Sbjct:  295 FRIVVPRIPSYFTGTGDLCAALLLAWSTKMPNQLGNAAEKAVASLQGVLRRT 346
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BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: C1E6L1_MICCC (Pyridoxal kinase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6L1_MICCC)

HSP 1 Score: 59.3 bits (142), Expect = 2.130e-8
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   70 ADEAFDLYRITFSRLPQKFTGTGDLAAALLLAWTHKLPGDLAGALERVAGSMRAVLART 246
            A+     +RI   R+P  FTGTGDL AALLLAWT K+P  L  A E    S++ VL RT
Sbjct:  211 AERCGQRFRIVVPRIPSYFTGTGDLCAALLLAWTAKMPDKLGRAAEMAVASLQGVLRRT 269
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BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: A0A7S0LJ60_9EUKA (Pyridoxal kinase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LJ60_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 2.230e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   91 YRITFSRLPQKFTGTGDLAAALLLAWTHKLP--GDLAGALERVAGSMRAVLARTHSQG 258
            + +T  RLPQ FTGTGDL +AL LAW+ +LP    LA  LERV  S++A+L  T + G
Sbjct:   90 WALTLPRLPQHFTGTGDLTSALFLAWSDRLPLPHQLAEVLERVGASLQALLQATRAAG 147
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BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: A0A150H3F0_GONPE (Pyridoxal kinase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3F0_GONPE)

HSP 1 Score: 58.9 bits (141), Expect = 2.960e-8
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   94 RITFSRLPQKFTGTGDLAAALLLAWTHKLPGDLAGALERVAGSMRAVLART 246
            ++   R+   FTGTGDL AALLLAW H  PGDLA A+E+  G ++AVLA T
Sbjct:  220 KMRIERIQAYFTGTGDLFAALLLAWMHHHPGDLATAVEKAVGGLQAVLADT 270
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BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: A0A8J4C3Z0_9CHLO (Pyridoxal kinase n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C3Z0_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 3.120e-8
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   94 RITFSRLPQKFTGTGDLAAALLLAWTHKLPGDLAGALERVAGSMRAVLART 246
            ++   R+   FTGTGDL AALLLAW H  PGDLA A+E+  G ++AVLA T
Sbjct:  200 KMRIDRIKAYFTGTGDLFAALLLAWMHHHPGDLATAVEKAVGGLQAVLADT 250
[Close]
BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: A0A8J4C1A6_9CHLO (Pyridoxal kinase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C1A6_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 3.420e-8
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   94 RITFSRLPQKFTGTGDLAAALLLAWTHKLPGDLAGALERVAGSMRAVLART 246
            ++   R+   FTGTGDL AALLLAW H  PGDLA A+E+  G ++AVLA T
Sbjct:  368 KMRIDRIKAYFTGTGDLFAALLLAWMHHHPGDLATAVEKAVGGLQAVLADT 418
[Close]
BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Match: A0A8J4APB0_9CHLO (Pyridoxal kinase n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APB0_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 4.320e-8
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   94 RITFSRLPQKFTGTGDLAAALLLAWTHKLPGDLAGALERVAGSMRAVLART 246
            ++   R+   FTGTGDL AALLLAW H  PGDLA A+E+  G ++AVLA T
Sbjct:  230 KMRIDRIKAYFTGTGDLFAALLLAWMHHHPGDLAVAVEKAVGGLQAVLADT 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203032.5761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G169_ECTSI2.370e-1688.89Pyridoxal kinase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7S0E9U4_9EUKA2.940e-1050.00Pyridoxal kinase n=1 Tax=Phaeocystis antarctica Ta... [more]
C1MUU3_MICPC5.750e-1057.69Pyridoxal kinase n=1 Tax=Micromonas pusilla (strai... [more]
A0A0A7ACX8_9CHLO1.240e-853.85Pyridoxal kinase (Fragment) n=1 Tax=Micromonas sp.... [more]
C1E6L1_MICCC2.130e-850.85Pyridoxal kinase n=1 Tax=Micromonas commoda (strai... [more]
A0A7S0LJ60_9EUKA2.230e-851.72Pyridoxal kinase (Fragment) n=1 Tax=Coccolithus br... [more]
A0A150H3F0_GONPE2.960e-856.86Pyridoxal kinase n=1 Tax=Gonium pectorale TaxID=33... [more]
A0A8J4C3Z0_9CHLO3.120e-856.86Pyridoxal kinase n=1 Tax=Volvox reticuliferus TaxI... [more]
A0A8J4C1A6_9CHLO3.420e-856.86Pyridoxal kinase n=2 Tax=Volvox reticuliferus TaxI... [more]
A0A8J4APB0_9CHLO4.320e-856.86Pyridoxal kinase n=1 Tax=Volvox africanus TaxID=51... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203032contigH-elongata_contig203032:91..351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue6.6e-14
Seed eggNOG ortholog2880.D7G169
Preferred namePDXK
KEGG rclassRC00002,RC00017
KEGG koko:K00868,ko:K02145
KEGG TC3.A.2.2
KEGG ReactionR00174,R01909,R02493
KEGG Pathwayko00190,ko00750,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map00750,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000003,GO:0000166,GO:0000278,GO:0000281,GO:0000282,GO:0000287,GO:0000910,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006972,GO:0007049,GO:0007154,GO:0007163,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008283,GO:0008478,GO:0008614,GO:0008615,GO:0009058,GO:0009108,GO:0009110,GO:0009267,GO:0009314,GO:0009443,GO:0009605,GO:0009628,GO:0009636,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009888,GO:0009987,GO:0009991,GO:0010015,GO:0010033,GO:0010053,GO:0010054,GO:0010165,GO:0010212,GO:0010243,GO:0010941,GO:0012505,GO:0014070,GO:0014075,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017085,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019842,GO:0019954,GO:0022402,GO:0022622,GO:0030010,GO:0030141,GO:0030154,GO:0030170,GO:0030554,GO:0030587,GO:0030955,GO:0031152,GO:0031402,GO:0031403,GO:0031410,GO:0031420,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032094,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032570,GO:0032940,GO:0033554,GO:0033993,GO:0034284,GO:0034641,GO:0034774,GO:0035580,GO:0035639,GO:0036094,GO:0036230,GO:0042119,GO:0042221,GO:0042364,GO:0042493,GO:0042538,GO:0042581,GO:0042594,GO:0042802,GO:0042803,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0045055,GO:0045321,GO:0046184,GO:0046483,GO:0046872,GO:0046903,GO:0046914,GO:0046983,GO:0048037,GO:0048364,GO:0048519,GO:0048523,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0060205,GO:0060548,GO:0061640,GO:0065007,GO:0070013,GO:0070279,GO:0070280,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071496,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0090558,GO:0090627,GO:0090702,GO:0097159,GO:0097367,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099402,GO:0099503,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901654,GO:1901698,GO:1901700,GO:1901701,GO:1903047,GO:1905392
EggNOG free text desc.pyridoxal 5'-phosphate salvage
EggNOG OGsCOG2240@1,KOG2599@2759
EC2.7.1.35,3.6.3.14
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930141.7341545-CDS-H-elongata_contig203032:90..3511622930141.7341545-CDS-H-elongata_contig203032:90..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203032 91..351 -
1691679296.9548178-CDS-H-elongata_contig203032:90..3511691679296.9548178-CDS-H-elongata_contig203032:90..351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203032 91..351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203032.5761.1prot_H-elongata_contig203032.5761.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203032 91..351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203032.5761.1

>prot_H-elongata_contig203032.5761.1 ID=prot_H-elongata_contig203032.5761.1|Name=mRNA_H-elongata_contig203032.5761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
EIGIGVGKERQGAAEGAAEAGEAADEAFDLYRITFSRLPQKFTGTGDLAA
ALLLAWTHKLPGDLAGALERVAGSMRAVLARTHSQGA
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mRNA from alignment at H-elongata_contig203032:91..351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203032.5761.1 ID=mRNA_H-elongata_contig203032.5761.1|Name=mRNA_H-elongata_contig203032.5761.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig203032:91..351- (Himanthalia elongata Himel1 dioecious)
GAGATCGGGATCGGGGTTGGGAAAGAAAGGCAGGGGGCGGCGGAGGGCGC
AGCAGAGGCGGGTGAGGCAGCCGACGAGGCGTTCGACCTGTACCGAATTA
CGTTCTCTCGACTCCCGCAGAAGTTCACGGGCACAGGGGACCTCGCGGCC
GCGCTGCTGCTGGCGTGGACGCACAAGCTCCCAGGCGATCTGGCGGGGGC
GCTCGAGCGCGTGGCGGGGAGCATGAGGGCCGTCCTCGCGAGAACGCACA
GCCAAGGTGCT
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Coding sequence (CDS) from alignment at H-elongata_contig203032:91..351-

>mRNA_H-elongata_contig203032.5761.1 ID=mRNA_H-elongata_contig203032.5761.1|Name=mRNA_H-elongata_contig203032.5761.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig203032:91..351- (Himanthalia elongata Himel1 dioecious)
GAGATCGGGATCGGGGTTGGGAAAGAAAGGCAGGGGGCGGCGGAGGGCGC
AGCAGAGGCGGGTGAGGCAGCCGACGAGGCGTTCGACCTGTACCGAATTA
CGTTCTCTCGACTCCCGCAGAAGTTCACGGGCACAGGGGACCTCGCGGCC
GCGCTGCTGCTGGCGTGGACGCACAAGCTCCCAGGCGATCTGGCGGGGGC
GCTCGAGCGCGTGGCGGGGAGCATGAGGGCCGTCCTCGCGAGAACGCACA
GCCAAGGTGCTGAGATCGGGATCGGGGTTGGGAAAGAAAGGCAGGGGGCG
GCGGAGGGCGCAGCAGAGGCGGGTGAGGCAGCCGACGAGGCGTTCGACCT
GTACCGAATTACGTTCTCTCGACTCCCGCAGAAGTTCACGGGCACAGGGG
ACCTCGCGGCCGCGCTGCTGCTGGCGTGGACGCACAAGCTCCCAGGCGAT
CTGGCGGGGGCGCTCGAGCGCGTGGCGGGGAGCATGAGGGCCGTCCTCGC
GAGAACGCACAGCCAAGGTGCT
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