mRNA_H-elongata_contig202931.5756.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202931.5756.1
Unique NamemRNA_H-elongata_contig202931.5756.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: D7G853_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G853_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.310e-22
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAECKVGKDEVG 159
            SPTYG+ITSTPKPGW+MVDVVGYLSDGSVPCKFDTDVNAPALAE   G  + G
Sbjct:   71 SPTYGYITSTPKPGWNMVDVVGYLSDGSVPCKFDTDVNAPALAEFMWGAKKEG 123
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: W7TQA6_9STRA (Fructokinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQA6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.640e-16
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAE 132
            SPTYG ITSTPKPGW  VDVVG L+DGS P  FDTDVNAPALAE
Sbjct:   70 SPTYGHITSTPKPGWKNVDVVGALTDGSKPVLFDTDVNAPALAE 113
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: A0A4D9D252_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D252_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.830e-15
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAE 132
            SPTYG ITSTPKPGW  VDVVG L+DGS P  FDTDVNAPALAE
Sbjct:   70 SPTYGHITSTPKPGWKNVDVVGALTDGSKPVLFDTDVNAPALAE 113
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: A0A836CJY8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.110e-15
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAE 132
            S TYG+IT+TPKPGW  VDVVG LSDGSVP  FDTDVNAPALAE
Sbjct:   71 SSTYGYITTTPKPGWHNVDVVGALSDGSVPVAFDTDVNAPALAE 114
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: A0A6T5PDP2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PDP2_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 4.130e-14
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAECKVG 144
            SPTYG ITSTPKPGW+  +VVG+  DG  P  FDTDVNAPALAE K G
Sbjct:   73 SPTYGQITSTPKPGWTNTEVVGFFWDGKTPMLFDTDVNAPALAEFKYG 120
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: A0A7S0SMC7_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SMC7_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 4.730e-14
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAE 132
            S TYG+IT +PKPGW MVDV+  LSDG  PC FDTDVNAPALAE
Sbjct:   36 SATYGYITHSPKPGWEMVDVLSALSDGVAPCGFDTDVNAPALAE 79
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: A0A0L0FJ94_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FJ94_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 5.710e-12
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAECKVG 144
            S TYG IT+TPKP W M DVVG      VP  FDTDVNAPALAE + G
Sbjct:   71 SETYGHITTTPKPHWGMADVVGKFKHFDVPIGFDTDVNAPALAEIEYG 118
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: F2UDM1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UDM1_SALR5)

HSP 1 Score: 66.2 bits (160), Expect = 6.900e-12
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 PTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAECKVGKDEVG 159
            P YG+ITSTPKP W   +VV  L +G VP KFDTDVNAPALAE K   + +G
Sbjct:  106 PEYGYITSTPKPHWKNANVVAPLWNGRVPHKFDTDVNAPALAEFKAHGEAMG 157
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: C1DZP3_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1DZP3_MICCC)

HSP 1 Score: 67.8 bits (164), Expect = 7.710e-12
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLSDG-SVPCKFDTDVNAPALAECKVGKDEV 156
            SPTYG+IT +PKPGW+ VDV+G L+DG   P  FDTDVNAPAL+E    + E+
Sbjct:  162 SPTYGYITHSPKPGWADVDVLGILADGFDCPAGFDTDVNAPALSELSAMRREM 214
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BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Match: A0A482SXB9_9ARCH (ROK family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXB9_9ARCH)

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 SPTYGFITSTPKPGWSMVDVVGYLS--DGSVPCKFDTDVNAPALAECKVGKDEVGS 162
            SP YGFIT+TPKPGW   DV+G L    G+ P +FDTDVNAPA++E  +G+    S
Sbjct:   69 SPKYGFITTTPKPGWQQADVLGLLGVRSGNKPFEFDTDVNAPAMSEYLMGQGRFSS 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202931.5756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G853_ECTSI4.310e-2283.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TQA6_9STRA2.640e-1681.82Fructokinase n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A4D9D252_9STRA2.830e-1581.82Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CJY8_9STRA3.110e-1581.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6T5PDP2_HETAK4.130e-1470.83Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S0SMC7_9CHLO4.730e-1475.00Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A0L0FJ94_9EUKA5.710e-1264.58Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
F2UDM1_SALR56.900e-1261.54Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
C1DZP3_MICCC7.710e-1260.38Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A482SXB9_9ARCH1.300e-1155.36ROK family protein n=1 Tax=archaeon TaxID=1906665 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202931contigH-elongata_contig202931:287..457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5e-18
Seed eggNOG ortholog2880.D7G853
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
EggNOG free text desc.ROK family
EggNOG OGs2QRD3@2759,COG1940@1
EC2.7.1.4
COG Functional cat.GK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930140.9193838-CDS-H-elongata_contig202931:286..4571622930140.9193838-CDS-H-elongata_contig202931:286..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202931 287..457 +
1691679296.666509-CDS-H-elongata_contig202931:286..4571691679296.666509-CDS-H-elongata_contig202931:286..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202931 287..457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202931.5756.1prot_H-elongata_contig202931.5756.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202931 287..457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202931.5756.1

>prot_H-elongata_contig202931.5756.1 ID=prot_H-elongata_contig202931.5756.1|Name=mRNA_H-elongata_contig202931.5756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
SPTYGFITSTPKPGWSMVDVVGYLSDGSVPCKFDTDVNAPALAECKVGKD
EVGSLG*
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mRNA from alignment at H-elongata_contig202931:287..457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202931.5756.1 ID=mRNA_H-elongata_contig202931.5756.1|Name=mRNA_H-elongata_contig202931.5756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig202931:287..457+ (Himanthalia elongata Himel1 dioecious)
AGCCCGACCTACGGATTCATCACGAGCACTCCTAAGCCAGGGTGGAGCAT
GGTGGACGTGGTGGGCTATCTTTCTGACGGCAGTGTTCCCTGCAAATTCG
ACACGGACGTGAATGCTCCTGCTTTGGCGGAATGCAAGGTAGGAAAGGAC
GAAGTGGGCTCGTTGGGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig202931:287..457+

>mRNA_H-elongata_contig202931.5756.1 ID=mRNA_H-elongata_contig202931.5756.1|Name=mRNA_H-elongata_contig202931.5756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig202931:287..457+ (Himanthalia elongata Himel1 dioecious)
AGCCCGACCTACGGATTCATCACGAGCACTCCTAAGCCAGGGTGGAGCAT
GGTGGACGTGGTGGGCTATCTTTCTGACGGCAGTGTTCCCTGCAAATTCG
ACACGGACGTGAATGCTCCTGCTTTGGCGGAATGCAAGGTAGGAAAGGAC
GAAGTGGGCTCGTTGGGTTAAAGCCCGACCTACGGATTCATCACGAGCAC
TCCTAAGCCAGGGTGGAGCATGGTGGACGTGGTGGGCTATCTTTCTGACG
GCAGTGTTCCCTGCAAATTCGACACGGACGTGAATGCTCCTGCTTTGGCG
GAATGCAAGGTAGGAAAGGACGAAGTGGGCTCGTTGGGTTAA
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