mRNA_H-elongata_contig20280.5750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20280.5750.1
Unique NamemRNA_H-elongata_contig20280.5750.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: D8LJA7_ECTSI (PITH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA7_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.310e-34
Identity = 85/106 (80.19%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    4 ACRHDHEEAGXXXXXXXXXXXXXXXXXXXX---EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFTQV 312
            +CRHDHEEAGXXXXXXXXXXXXXXXXXXXX   EDP GMSL+GLIDTTR          VRCLNESAPGS LNCLKPWD+RRDPQPRLESEE+DPEL+I+VPFTQV
Sbjct:    3 SCRHDHEEAGXXXXXXXXXXXXXXXXXXXXXDPEDPDGMSLFGLIDTTR----------VRCLNESAPGSGLNCLKPWDKRRDPQPRLESEEDDPELIIYVPFTQV 98          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A835ZD87_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD87_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-23
Identity = 64/103 (62.14%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    4 ACRHDHEEAGXXXXXXXXXXXXXXXXXXXXEDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFTQV 312
            ACR +HE  G      XXXXXXXXXXX   EDP G SLYGLIDTTR          VRCLNESA G  L CLKPWD+RR+P+P LES + DPEL+I VPFT+V
Sbjct:    3 ACRGEHEGCGGGHDHSXXXXXXXXXXXDI-EDPTGQSLYGLIDTTR----------VRCLNESAVGQVLQCLKPWDKRREPEPFLESNDGDPELLIHVPFTEV 94          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: W7UAE5_9STRA (PITH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAE5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.540e-14
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    1 MACRHDHEEAGXXXXXXXXXXXXXXXXXXXXEDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFTQV 312
            M+CR DH ++                     EDP G S++  IDT++          VRCLNE+  G+ L+  K +++RR+P+PRL+S ++DPEL++FVPFT++
Sbjct:    1 MSCRGDHIDS----CGHGHDHAHGEECDHEAEDPDGQSMFAAIDTSK----------VRCLNENEIGACLHPFKLYNKRREPEPRLDSHDDDPELLLFVPFTRI 90          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A7S0QYR0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYR0_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 3.270e-10
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   94 EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRR--RDPQPRLESEENDPELVIFVPFT 306
            E+ GG SL+G IDTT+          V  LN S P S  N  +PWD+R  RD +P L S+E+DPEL+IF+PFT
Sbjct:   16 ENCGGTSLHGYIDTTK----------VTVLNASNPDSLKNVFRPWDQRLARDVEP-LNSDEDDPELLIFIPFT 77          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A7S3PG12_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PG12_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.190e-10
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   94 EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFT 306
            ED  G SLY  ID  +          V C+NE   G A N +KPW++R++  P LESEE+D EL++ +PFT
Sbjct:   37 EDGSGNSLYQWIDKDK----------VSCMNEKESGMAKNIIKPWEQRKEYLPILESEEDDAELLLHIPFT 97          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A2D4BK70_PYTIN (PITH domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK70_PYTIN)

HSP 1 Score: 62.8 bits (151), Expect = 1.070e-9
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    1 MACRHDHEEAGXXXXXXXXXXXXXXXXXXXX-EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFTQ 309
            M C+ +H+E G  XXXXXXXXXXXXXXXXX  EDP G SL+  IDT++          +R LN + P    +  KPW  R D    L S E+DPEL+IF+PFT+
Sbjct:    1 MQCQREHDECGGHXXXXXXXXXXXXXXXXXEPEDPSGDSLFPYIDTSK----------LRALNAAEPDHVAHPFKPWHERSDRSRYLSSNEDDPELIIFIPFTE 94          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A1Y2F5B0_PROLT (Galactose-binding domain-like protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2F5B0_PROLT)

HSP 1 Score: 62.4 bits (150), Expect = 1.530e-9
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
Query:  172 VRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPF 303
            VRCLNE +PGSA + ++PWD+R D  P L+SEE+D +L++ VPF
Sbjct:   43 VRCLNEQSPGSARHIIRPWDKRWDTNPSLQSEEDDAQLLLHVPF 86          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A7S3PG51_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PG51_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.280e-9
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   94 EDPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFT 306
            ED  G SLY  ID  +          V C+NE   G A N +KPW++R++  P LESEE+D EL++ +PFT
Sbjct:   37 EDGSGNSLYQWIDKDK----------VSCMNEKESGMAKNIIKPWEQRKEYLPILESEEDDAELLLHIPFT 97          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A7S4HIT9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HIT9_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 5.500e-9
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 1
Query:  106 GMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFT 306
            G SLY  I+T           +V CLNES PGS  NC KP+  R      LES E+D +L++++PFT
Sbjct:   33 GWSLYQYINT----------ESVTCLNESVPGSVKNCFKPYSERASTDKYLESNEDDEQLILYIPFT 89          
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Match: A0A5A8CDQ3_CAFRO (PITH domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8CDQ3_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 1.340e-8
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   97 DPGGMSLYGLIDTTRRVPNYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVPFT 306
            D GG SL+G ID  +          V   NE+  G+A+  LKPW RRR+  P + S+++DPEL+I +PFT
Sbjct:   21 DAGGDSLFGSIDREK----------VFAYNEAKAGAAVRALKPWARRREAVPFVLSDDDDPELIIHIPFT 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20280.5750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA7_ECTSI1.310e-3480.19PITH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZD87_9STRA1.080e-2362.14Galactose-binding domain-like protein n=1 Tax=Trib... [more]
W7UAE5_9STRA3.540e-1436.54PITH domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S0QYR0_9CHLO3.270e-1049.32Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S3PG12_9STRA4.190e-1043.66Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2D4BK70_PYTIN1.070e-950.00PITH domain-containing protein n=1 Tax=Pythium ins... [more]
A0A1Y2F5B0_PROLT1.530e-956.82Galactose-binding domain-like protein n=1 Tax=Prot... [more]
A0A7S3PG51_9STRA2.280e-943.66Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S4HIT9_9EUKA5.500e-943.28Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A5A8CDQ3_CAFRO1.340e-842.86PITH domain-containing protein n=2 Tax=Sar TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20280contigH-elongata_contig20280:5554..6745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D8LJA7
Preferred namePITHD1
KEGG koko:K02906,ko:K15218
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896,GO:0051716
EggNOG free text desc.cellular response to DNA damage stimulus
EggNOG OGsKOG1730@1,KOG1730@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930140.5731564-CDS-H-elongata_contig20280:5553..57231622930140.5731564-CDS-H-elongata_contig20280:5553..5723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20280 5554..5723 +
1691679296.5388803-CDS-H-elongata_contig20280:5553..57231691679296.5388803-CDS-H-elongata_contig20280:5553..5723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20280 5554..5723 +
1622930140.5855796-CDS-H-elongata_contig20280:6603..67451622930140.5855796-CDS-H-elongata_contig20280:6603..6745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20280 6604..6745 +
1691679296.5502436-CDS-H-elongata_contig20280:6603..67451691679296.5502436-CDS-H-elongata_contig20280:6603..6745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20280 6604..6745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20280.5750.1prot_H-elongata_contig20280.5750.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20280 5554..6745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20280.5750.1

>prot_H-elongata_contig20280.5750.1 ID=prot_H-elongata_contig20280.5750.1|Name=mRNA_H-elongata_contig20280.5750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MACRHDHEEAGGGGDGHDHSHGHGHDHSHDHEDPGGMSLYGLIDTTRRVP
NYDPNSTVRCLNESAPGSALNCLKPWDRRRDPQPRLESEENDPELVIFVP
FTQV
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mRNA from alignment at H-elongata_contig20280:5554..6745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20280.5750.1 ID=mRNA_H-elongata_contig20280.5750.1|Name=mRNA_H-elongata_contig20280.5750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-elongata_contig20280:5554..6745+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTGCAGGCATGACCACGAGGAGGCGGGAGGAGGGGGCGATGGTCA CGATCACAGTCACGGACATGGCCATGACCACAGCCACGATCACGAAGACC CGGGCGGCATGTCTCTCTACGGCCTCATCGATACTACCAGGCGAGTACCA AATTACGACCCAAATAGCACGTGATGTCGGGCTTTCAAGTAGATAATGGG GTGGAAGTGTGCGACACAGGCAAACTCGAAATTGAAAGTTTTAAAGTATT TTGTATACGCATACAAGTAGGCTTGTTCTTTGTATGTAGGGTACATGCGG CATATCCGGCGTCCGAGTGGTCCAGTGGTAACTACGTACGGTAGTACAGT ATAAAAGAGGAATCCCATTAGTGCAGAAGTCATGGGTTCGATACCCACCA GGACTGATTCTTCCGTTTATTTTATTGAGTATTGTAGTGGAAAATGTGGG AACGGGAGCCAGCAAAGCCATTGTTTGACGAGGTGTACGGGGTGCTTGAC TTGCTTCGCGAAAAAAATCGGAGGCGTTTACTAACCGGGGAAAGATGGGT TGATTGTTGTTTGATCCCTTAGGACCACAGGCGGGATGAAATGGGATGGG ATGGGTAACGCTACAGGAGGGGGGATTGGTAACCTAAGAGTAGCACGTTG AATACCGGTAGCCCCGCCCCATCGGCGTAAGAAAGTGATATAGAAAAACA GACAAAAAAACAAGATCGTTTGCAATCAATATGCTCTACGGTACTCGTCA TCCTTGTCATCGGGGGGGGGAGGCAAAAAAAGGCCATTGAAATCTTCATT CGGCAATTACCAAGCTTCACGCAGCCAGAANNNNNNNNNNAAAAAAATAA TAAAAAAAAAAGGCAAAAAAAACAGGTTCGTTTGTATTCATGATGCGCTA CGGCACTCGTCGTCCTTGTCATCGGGGGGGGGGAGGCAAAAAAAGGCCAT TGAAATCTTCATTCGGCAATTCCCAAGCTTCACGCAGCCAGAAAAATCAT TTTTTTCTATTGATCCTTGCATAAACATCAATTTCTCGCCAACTATACAG AGTCCGCTGCCTCAATGAGAGCGCCCCGGGCAGCGCCTTGAACTGCCTGA AACCGTGGGACAGGCGACGAGACCCGCAGCCCCGCCTCGAGAGCGAAGAG AATGATCCAGAGCTCGTCATTTTCGTGCCCTTCACGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig20280:5554..6745+

>mRNA_H-elongata_contig20280.5750.1 ID=mRNA_H-elongata_contig20280.5750.1|Name=mRNA_H-elongata_contig20280.5750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig20280:5554..6745+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTGCAGGCATGACCACGAGGAGGCGGGAGGAGGGGGCGATGGTCA
CGATCACAGTCACGGACATGGCCATGACCACAGCCACGATCACGAAGACC
CGGGCGGCATGTCTCTCTACGGCCTCATCGATACTACCAGGCGAGTACCA
AATTACGACCCAAATAGCACATGGCTTGCAGGCATGACCACGAGGAGGCG
GGAGGAGGGGGCGATGGTCACGATCACAGTCACGGACATGGCCATGACCA
CAGCCACGATCACGAAGACCCGGGCGGCATGTCTCTCTACGGCCTCATCG
ATACTACCAGGCGAGTACCAAATTACGACCCAAATAGCACAGTCCGCTGC
CTCAATGAGAGCGCCCCGGGCAGCGCCTTGAACTGCCTGAAACCGTGGGA
CAGGCGACGAGACCCGCAGCCCCGCCTCGAGAGCGAAGAGAATGATCCAG
AGCTCGTCATTTTCGTGCCCTTCACGCAGGTGAGTCCGCTGCCTCAATGA
GAGCGCCCCGGGCAGCGCCTTGAACTGCCTGAAACCGTGGGACAGGCGAC
GAGACCCGCAGCCCCGCCTCGAGAGCGAAGAGAATGATCCAGAGCTCGTC
ATTTTCGTGCCCTTCACGCAGGTG
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