mRNA_H-elongata_contig2028.5749.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI) HSP 1 Score: 304 bits (778), Expect = 8.000e-92 Identity = 163/212 (76.89%), Postives = 177/212 (83.49%), Query Frame = 1
Query: 1 SRFPSCKCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGMLGTAAGTMAEARESNEGHVGDMAAMNEEGVKLWSADEDYAYLAAERLADSVARD 636
S P KCL+FAQHKA LDVTESALLR CF GV YLRMDGS SQA+RA VDRFS DPSVAI+LLTTRVGHLGLNLSAASMV+FLEHDWNPQVDLQAMDRAHRLGQ+KAVNV+RLIAADSVEQRVLRLQGHKL VA+AVVS+EN+SAF+SGTGGVLGMLG A +A + E V+LWSADEDYAYLAAERLADSVAR+
Sbjct: 2124 SPLPGRKCLVFAQHKAALDVTESALLRPCFPGVKYLRMDGSVSQAERAAAVDRFSADPSVAILLLTTRVGHLGLNLSAASMVVFLEHDWNPQVDLQAMDRAHRLGQRKAVNVYRLIAADSVEQRVLRLQGHKLQVAAAVVSRENASAFSSGTGGVLGMLGEAMAVVAXXXXXXXXXXXX----DGESVELWSADEDYAYLAAERLADSVARE 2331
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A835Z4M3_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M3_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.670e-49 Identity = 104/203 (51.23%), Postives = 134/203 (66.01%), Query Frame = 1
Query: 19 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGMLGTAAGTMAEARESNEGHVGDMAAMNEEGVKLWSADEDYAYLAAERLADSV 627
KCL+FAQHKA LD E LLR V YLR+DGS Q RA V++RF++D +V+++LLTT VG LGLNL+ A VIFLEH WNPQVDLQAMDRAHR+GQ++AVNV+RL+A +VE+R+L LQ KL A VV K+N+S ++ T VL L AA + A + + AA E ++ ++YA AER A SV
Sbjct: 383 KCLVFAQHKAALDAAEQCLLRQHLPSVKYLRIDGSIGQDARAAVLERFTSDAAVSLLLLTTAVGGLGLNLTVADTVIFLEHHWNPQVDLQAMDRAHRIGQRRAVNVYRLVATGTVEERILLLQAGKLATAEKVVGKDNASLWSLDTDSVL-QLFNAAIDASGAADGSXXXXXXXAAAEERQLQ-----DEYASFDAERFAVSV 579
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A7S0S898_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S898_9CHLO) HSP 1 Score: 160 bits (405), Expect = 1.550e-46 Identity = 80/150 (53.33%), Postives = 109/150 (72.67%), Query Frame = 1
Query: 19 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVL 468
+ LIF Q K +LD+ E + + RGV++LR+DGS R +VV RF+ DPS+ ++LLTT VG LGLNL+ A V+FLEHDWNPQ DLQAMDRAHRLGQ++ VNV+RL+ ++E++++ LQ KL VA+AVV+ +N S A TG +L
Sbjct: 3 RVLIFCQLKGLLDLVEEEMFGSMLRGVSFLRLDGSVPPTQRFDVVRRFNADPSIDVLLLTTHVGGLGLNLTTADTVVFLEHDWNPQKDLQAMDRAHRLGQKRTVNVYRLLTKGTLEEKIMGLQRFKLDVANAVVNSDNMSLSAMDTGQML 152
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A0B6ZWI8_9EUPU (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZWI8_9EUPU) HSP 1 Score: 164 bits (414), Expect = 1.710e-46 Identity = 80/153 (52.29%), Postives = 110/153 (71.90%), Query Frame = 1
Query: 19 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGML 477
+ L+F Q KA+LD+ E LL+ C VT+LR+DGS R ++V RF+ DPS+ I+LLTT VG LGLNL+ A VIF+EHDWNP DLQAMDRAHR+GQ+K VNV+RLI ++E++++ LQ K+ VA+ V+++ENSS GT +L +
Sbjct: 63 RVLLFCQLKAMLDIVEKDLLKACMPNVTFLRLDGSVPTGSRHDIVHRFNNDPSIDILLLTTHVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKMAVANTVITQENSSLQTMGTDQLLDLF 215
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A7S0Z8Q0_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z8Q0_9CHLO) HSP 1 Score: 160 bits (405), Expect = 1.550e-45 Identity = 78/150 (52.00%), Postives = 114/150 (76.00%), Query Frame = 1
Query: 19 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVL 468
+ L+F+Q K++LD+ E+ L R V++LR+DGS + + R EVV +F+ DPS+ ++LLTT VG LGLNL++A V+FLEHDWNPQ DLQAMDRAHRLGQ++ VNV+R++ ++E++++ LQ KL VA+AVV+ +N+S A TG +L
Sbjct: 33 RVLVFSQLKSLLDLVENELFSNSMRDVSWLRLDGSVAPSQRFEVVRKFNADPSIDVLLLTTHVGGLGLNLTSADTVVFLEHDWNPQKDLQAMDRAHRLGQRRTVNVYRILTRGTLEEKIMSLQRFKLDVANAVVNADNASMSAMDTGQML 182
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: UPI00193A5E43 (LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A5E43) HSP 1 Score: 170 bits (431), Expect = 3.280e-45 Identity = 82/153 (53.59%), Postives = 115/153 (75.16%), Query Frame = 1
Query: 19 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGML 477
+ LIF QHK++LD+ E LLR + VT++R+DGS A+R ++V +F+ DPS+ ++LLTT+VG LGLNL+ A VIF+EHDWNP VDLQAMDRAHR+GQ++ VNV+RLI ++E+++L LQ KL +A+ V+S ENSS + GT VL +
Sbjct: 1624 RALIFCQHKSMLDIVEHDLLRKHMKSVTFMRLDGSVVAANRHQIVSKFNNDPSIDLLLLTTKVGGLGLNLTGADTVIFIEHDWNPTVDLQAMDRAHRIGQKRVVNVYRLITRATLEEKILGLQQFKLNIANTVISTENSSLHSMGTNQVLDLF 1776
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A7SE45_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SE45_NEMVE) HSP 1 Score: 158 bits (400), Expect = 3.940e-45 Identity = 76/147 (51.70%), Postives = 107/147 (72.79%), Query Frame = 1
Query: 19 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTG 459
+ L+F Q K++LD+ E+ L +T VTYLR+DGS+ R +V RF+ DPS+ ++LLTT VG LGLNL+ A VIF+EHDWNP DLQAMDRAHR+GQ+K VNV+RL+ ++E++++ LQ KL +A+ V+S++NSS TG
Sbjct: 29 RVLLFCQLKSMLDIVENDLFKTNMPSVTYLRLDGSTPAGSRHSIVHRFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLVTKGTLEEKIMGLQKFKLTIANTVISQDNSSLSTMDTG 175
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A0B6ZWL7_9EUPU (Helicase C-terminal domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZWL7_9EUPU) HSP 1 Score: 164 bits (414), Expect = 4.650e-45 Identity = 80/153 (52.29%), Postives = 110/153 (71.90%), Query Frame = 1
Query: 19 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGML 477
+ L+F Q KA+LD+ E LL+ C VT+LR+DGS R ++V RF+ DPS+ I+LLTT VG LGLNL+ A VIF+EHDWNP DLQAMDRAHR+GQ+K VNV+RLI ++E++++ LQ K+ VA+ V+++ENSS GT +L +
Sbjct: 202 RVLLFCQLKAMLDIVEKDLLKACMPNVTFLRLDGSVPTGSRHDIVHRFNNDPSIDILLLTTHVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKMAVANTVITQENSSLQTMGTDQLLDLF 354
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: E2BIA8_HARSA (TATA-binding protein-associated factor 172 n=1 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BIA8_HARSA) HSP 1 Score: 161 bits (407), Expect = 4.880e-45 Identity = 84/153 (54.90%), Postives = 108/153 (70.59%), Query Frame = 1
Query: 19 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGML 477
+ LIF Q KA+LD+ E LLR VTYLR+DGS A R VV RF+ DPS+ ++LLTT+VG LGLNL+ A VIF+EHDWNP DLQAMDRAHR+GQ+K VNV+RLI +VE++++ LQ KL A+ V+S EN+S GT +L +
Sbjct: 108 RALIFCQLKAMLDIVEKDLLRMHLPTVTYLRLDGSIPAAQRHSVVARFNADPSIDVLLLTTQVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRSTVEEKIMGLQKFKLLTANTVISTENASLDTMGTDQLLDLF 260
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A6H5J4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4R7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 8.180e-45 Identity = 85/105 (80.95%), Postives = 88/105 (83.81%), Query Frame = 1
Query: 1 SRFPSCKCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLG 315
S P CKCLIFAQHKA LDVTESALLR CF GV YLRMDGS SQA+RA VDRFS DPSVAI+LLTTRVGHLGLNLSAASMV+FLEHDWNPQVDLQ A LG
Sbjct: 1463 SPLPGCKCLIFAQHKAALDVTESALLRPCFPGVKYLRMDGSVSQAERAAAVDRFSADPSVAILLLTTRVGHLGLNLSAASMVVFLEHDWNPQVDLQVRGCAGVLG 1567 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig2028.5749.1 >prot_H-elongata_contig2028.5749.1 ID=prot_H-elongata_contig2028.5749.1|Name=mRNA_H-elongata_contig2028.5749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp SRFPSCKCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVback to top mRNA from alignment at H-elongata_contig2028:12782..13934+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig2028.5749.1 ID=mRNA_H-elongata_contig2028.5749.1|Name=mRNA_H-elongata_contig2028.5749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1153bp|location=Sequence derived from alignment at H-elongata_contig2028:12782..13934+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig2028:12782..13934+ >mRNA_H-elongata_contig2028.5749.1 ID=mRNA_H-elongata_contig2028.5749.1|Name=mRNA_H-elongata_contig2028.5749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig2028:12782..13934+ (Himanthalia elongata Himel1 dioecious)back to top |