mRNA_H-elongata_contig20270.5747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20270.5747.1
Unique NamemRNA_H-elongata_contig20270.5747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20270.5747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20270contigH-elongata_contig20270:4275..6431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2157
Cds size1914
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20270.5747.1prot_H-elongata_contig20270.5747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20270 4317..6230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930140.143916-UTR-H-elongata_contig20270:4274..43161622930140.143916-UTR-H-elongata_contig20270:4274..4316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20270 4275..4316 +
1691679296.3869772-UTR-H-elongata_contig20270:4274..43161691679296.3869772-UTR-H-elongata_contig20270:4274..4316Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20270 4275..4316 +
1622930140.1707315-UTR-H-elongata_contig20270:6230..64311622930140.1707315-UTR-H-elongata_contig20270:6230..6431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20270 6231..6431 +
1691679296.403817-UTR-H-elongata_contig20270:6230..64311691679296.403817-UTR-H-elongata_contig20270:6230..6431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20270 6231..6431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930140.1567874-CDS-H-elongata_contig20270:4316..62301622930140.1567874-CDS-H-elongata_contig20270:4316..6230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20270 4317..6230 +
1691679296.3948095-CDS-H-elongata_contig20270:4316..62301691679296.3948095-CDS-H-elongata_contig20270:4316..6230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20270 4317..6230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20270.5747.1

>prot_H-elongata_contig20270.5747.1 ID=prot_H-elongata_contig20270.5747.1|Name=mRNA_H-elongata_contig20270.5747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=638bp
MSEFVRKRCASDGCFKRPSYGVAGSKKANYCAVHALKGTINVARKKCAGD
GCLKLPTYGVSSSNKAEYCTMHALEGMVDVMSKMCASNGCLKRPSCGMAG
SKKAEYCAMHALKGMINIVNKRCASDECFKNPRFGVAGSKKAEYCAVHAL
EGMVDVVRKRCAGHGCFKQPKYGMAGSNKEEYCVAHALKGMIYVASKKCA
GDGCLKLPTYGVASSNKAEYCAVHALEGMVDVMSKRCASNGCLKRPSYGV
AGSKKAEYCAVHALEGMINIMNKRCASDECFKHPSYGVAGSKKAKYCVVH
ALQGMVNVQNQRCSRDGCGEQPSYGVAGSKKTEYCTGHALEGMVTIGKKK
CASERCYRDPTYGVPGSRIREYCIVHASEGMIKVASKRCASDGCLKQPRY
GVAGGKILEYCAVHALEGMINVASKKCAGDGCLKQPRYGVAGSKKAEYCA
VHALEGMINIVDKRCASDECFKHPSYGVAGSKKAEYCAVHALEGMVDVMS
KRCSCNGCFKQPSYGMSGTKKPEYCSVHALEGMVNVVNKRCASDGCIKHP
SYGVAGSKKKEYCAVHALEGMISVKKKRCASNISAAQNQASRKRMPETGA
REVSILERKSTTTFKRPFNNGVSDAERVKVEVSLSLS*
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mRNA from alignment at H-elongata_contig20270:4275..6431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20270.5747.1 ID=mRNA_H-elongata_contig20270.5747.1|Name=mRNA_H-elongata_contig20270.5747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2157bp|location=Sequence derived from alignment at H-elongata_contig20270:4275..6431+ (Himanthalia elongata Himel1 dioecious)
AGATCGTTGTGAAGCCCTTGTGGAGTGCATAATTTAAGAAGGATGAGTGA
ATTTGTCCGCAAAAGGTGTGCTAGCGATGGGTGCTTTAAACGACCGAGCT
ATGGCGTGGCCGGAAGCAAGAAAGCGAATTACTGCGCAGTACATGCTTTA
AAGGGGACGATCAACGTTGCGCGCAAAAAGTGTGCTGGTGATGGGTGTTT
AAAGCTACCGACGTATGGCGTGTCAAGCAGCAATAAAGCGGAATACTGCA
CGATGCATGCTTTGGAAGGCATGGTGGACGTTATGAGCAAGATGTGCGCA
AGTAATGGATGCTTAAAGCGTCCAAGTTGTGGCATGGCCGGTAGCAAAAA
AGCGGAATACTGCGCGATGCATGCTTTAAAGGGGATGATCAACATTGTGA
ACAAGAGGTGTGCAAGTGATGAATGTTTTAAGAATCCGAGGTTTGGCGTG
GCCGGCAGCAAGAAAGCAGAATACTGCGCGGTGCATGCTTTGGAAGGGAT
GGTCGACGTTGTGAGAAAGAGGTGTGCTGGTCATGGATGTTTTAAGCAAC
CGAAGTATGGCATGGCTGGCAGCAACAAAGAGGAATACTGTGTAGCGCAT
GCTTTAAAGGGGATGATCTACGTTGCAAGCAAGAAGTGTGCTGGTGATGG
GTGTTTAAAGCTACCAACGTATGGTGTGGCCAGCAGCAATAAAGCAGAAT
ACTGCGCGGTGCATGCTTTGGAAGGCATGGTCGACGTTATGAGCAAGAGG
TGTGCAAGTAATGGATGCTTGAAGCGTCCGAGTTATGGCGTGGCCGGTAG
CAAAAAAGCGGAATACTGCGCGGTGCATGCTTTAGAGGGGATGATCAACA
TTATGAACAAGAGGTGTGCAAGTGATGAATGCTTTAAGCATCCGAGTTAT
GGCGTGGCCGGTAGCAAGAAAGCAAAATATTGCGTGGTGCATGCTTTGCA
AGGAATGGTTAACGTTCAGAACCAAAGGTGTTCTAGGGATGGGTGCGGTG
AGCAACCGAGTTATGGTGTGGCTGGCAGTAAAAAAACGGAATACTGCACG
GGGCATGCTTTAGAGGGGATGGTCACCATAGGGAAGAAGAAGTGTGCAAG
CGAAAGATGCTATAGGGATCCGACCTACGGGGTCCCCGGCAGCAGAATAC
GGGAGTACTGCATAGTGCATGCTTCAGAAGGGATGATCAAGGTTGCGAGC
AAGAGGTGTGCTAGTGATGGATGTTTGAAGCAACCGAGGTATGGCGTGGC
CGGCGGGAAGATTTTGGAATACTGCGCGGTGCATGCTTTGGAAGGGATGA
TCAACGTTGCGAGCAAGAAGTGTGCTGGTGATGGGTGTTTAAAGCAACCG
AGGTATGGCGTGGCCGGTAGCAAAAAAGCGGAATACTGCGCGGTGCATGC
TTTAGAGGGGATGATCAACATTGTGGACAAGAGGTGTGCAAGTGATGAAT
GCTTTAAGCATCCGAGTTATGGCGTGGCCGGTAGCAAAAAAGCGGAATAC
TGCGCGGTGCATGCTTTGGAAGGGATGGTCGACGTTATGAGTAAGAGGTG
CTCTTGTAATGGATGCTTTAAGCAACCAAGTTATGGCATGTCCGGCACGA
AGAAACCGGAATATTGCTCGGTACATGCTTTGGAAGGGATGGTCAACGTC
GTGAACAAGAGGTGTGCAAGTGATGGATGCATAAAGCATCCGAGTTATGG
CGTGGCCGGTAGCAAGAAAAAGGAATACTGCGCGGTGCATGCTTTGGAAG
GGATGATCTCCGTTAAGAAAAAGAGGTGTGCAAGTAATATTTCGGCTGCA
CAAAATCAGGCTAGCAGGAAGCGAATGCCCGAGACTGGTGCGCGAGAAGT
ATCTATTTTAGAGAGAAAAAGTACGACCACGTTTAAACGCCCCTTTAATA
ATGGAGTATCAGATGCAGAGAGAGTGAAAGTTGAGGTGTCCCTATCTCTG
TCCTAGTGTATAACTTTTTCGTTGTTAAAAGTTGCAAATAATCTACTGGA
GACCATTCGGGGGTTTGCGCGCCGGGGCTACCATAGCTCCAAAGTGGTCT
CAAATAGTATTTTGCAACAAGCAGTGTACACGGAGGTTTGTTAGTTTGAT
CTGGTTAAAGATAAAAAAGAAAACAAATGTCAAAGTTTCTTGTACTTCAT
ACTGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig20270:4275..6431+

>mRNA_H-elongata_contig20270.5747.1 ID=mRNA_H-elongata_contig20270.5747.1|Name=mRNA_H-elongata_contig20270.5747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3828bp|location=Sequence derived from alignment at H-elongata_contig20270:4275..6431+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGAATTTGTCCGCAAAAGGTGTGCTAGCGATGGGTGCTTTAAACG
ACCGAGCTATGGCGTGGCCGGAAGCAAGAAAGCGAATTACTGCGCAGTAC
ATGCTTTAAAGGGGACGATCAACGTTGCGCGCAAAAAGTGTGCTGGTGAT
GGGTGTTTAAAGCTACCGACGTATGGCGTGTCAAGCAGCAATAAAGCGGA
ATACTGCACGATGCATGCTTTGGAAGGCATGGTGGACGTTATGAGCAAGA
TGTGCGCAAGTAATGGATGCTTAAAGCGTCCAAGTTGTGGCATGGCCGGT
AGCAAAAAAGCGGAATACTGCGCGATGCATGCTTTAAAGGGGATGATCAA
CATTGTGAACAAGAGGTGTGCAAGTGATGAATGTTTTAAGAATCCGAGGT
TTGGCGTGGCCGGCAGCAAGAAAGCAGAATACTGCGCGGTGCATGCTTTG
GAAGGGATGGTCGACGTTGTGAGAAAGAGGTGTGCTGGTCATGGATGTTT
TAAGCAACCGAAGTATGGCATGGCTGGCAGCAACAAAGAGGAATACTGTG
TAGCGCATGCTTTAAAGGGGATGATCTACGTTGCAAGCAAGAAGTGTGCT
GGTGATGGGTGTTTAAAGCTACCAACGTATGGTGTGGCCAGCAGCAATAA
AGCAGAATACTGCGCGGTGCATGCTTTGGAAGGCATGGTCGACGTTATGA
GCAAGAGGTGTGCAAGTAATGGATGCTTGAAGCGTCCGAGTTATGGCGTG
GCCGGTAGCAAAAAAGCGGAATACTGCGCGGTGCATGCTTTAGAGGGGAT
GATCAACATTATGAACAAGAGGTGTGCAAGTGATGAATGCTTTAAGCATC
CGAGTTATGGCGTGGCCGGTAGCAAGAAAGCAAAATATTGCGTGGTGCAT
GCTTTGCAAGGAATGGTTAACGTTCAGAACCAAAGGTGTTCTAGGGATGG
GTGCGGTGAGCAACCGAGTTATGGTGTGGCTGGCAGTAAAAAAACGGAAT
ACTGCACGGGGCATGCTTTAGAGGGGATGGTCACCATAGGGAAGAAGAAG
TGTGCAAGCGAAAGATGCTATAGGGATCCGACCTACGGGGTCCCCGGCAG
CAGAATACGGGAGTACTGCATAGTGCATGCTTCAGAAGGGATGATCAAGG
TTGCGAGCAAGAGGTGTGCTAGTGATGGATGTTTGAAGCAACCGAGGTAT
GGCGTGGCCGGCGGGAAGATTTTGGAATACTGCGCGGTGCATGCTTTGGA
AGGGATGATCAACGTTGCGAGCAAGAAGTGTGCTGGTGATGGGTGTTTAA
AGCAACCGAGGTATGGCGTGGCCGGTAGCAAAAAAGCGGAATACTGCGCG
GTGCATGCTTTAGAGGGGATGATCAACATTGTGGACAAGAGGTGTGCAAG
TGATGAATGCTTTAAGCATCCGAGTTATGGCGTGGCCGGTAGCAAAAAAG
CGGAATACTGCGCGGTGCATGCTTTGGAAGGGATGGTCGACGTTATGAGT
AAGAGGTGCTCTTGTAATGGATGCTTTAAGCAACCAAGTTATGGCATGTC
CGGCACGAAGAAACCGGAATATTGCTCGGTACATGCTTTGGAAGGGATGG
TCAACGTCGTGAACAAGAGGTGTGCAAGTGATGGATGCATAAAGCATCCG
AGTTATGGCGTGGCCGGTAGCAAGAAAAAGGAATACTGCGCGGTGCATGC
TTTGGAAGGGATGATCTCCGTTAAGAAAAAGAGGTGTGCAAGTAATATTT
CGGCTGCACAAAATCAGGCTAGCAGGAAGCGAATGCCCGAGACTGGTGCG
CGAGAAGTATCTATTTTAGAGAGAAAAAGTACGACCACGTTTAAACGCCC
CTTTAATAATGGAGTATCAGATGCAGAGAGAGTGAAAGTTGAGGTGTCCC
TATCTCTGTCCTAGATGAGTGAATTTGTCCGCAAAAGGTGTGCTAGCGAT
GGGTGCTTTAAACGACCGAGCTATGGCGTGGCCGGAAGCAAGAAAGCGAA
TTACTGCGCAGTACATGCTTTAAAGGGGACGATCAACGTTGCGCGCAAAA
AGTGTGCTGGTGATGGGTGTTTAAAGCTACCGACGTATGGCGTGTCAAGC
AGCAATAAAGCGGAATACTGCACGATGCATGCTTTGGAAGGCATGGTGGA
CGTTATGAGCAAGATGTGCGCAAGTAATGGATGCTTAAAGCGTCCAAGTT
GTGGCATGGCCGGTAGCAAAAAAGCGGAATACTGCGCGATGCATGCTTTA
AAGGGGATGATCAACATTGTGAACAAGAGGTGTGCAAGTGATGAATGTTT
TAAGAATCCGAGGTTTGGCGTGGCCGGCAGCAAGAAAGCAGAATACTGCG
CGGTGCATGCTTTGGAAGGGATGGTCGACGTTGTGAGAAAGAGGTGTGCT
GGTCATGGATGTTTTAAGCAACCGAAGTATGGCATGGCTGGCAGCAACAA
AGAGGAATACTGTGTAGCGCATGCTTTAAAGGGGATGATCTACGTTGCAA
GCAAGAAGTGTGCTGGTGATGGGTGTTTAAAGCTACCAACGTATGGTGTG
GCCAGCAGCAATAAAGCAGAATACTGCGCGGTGCATGCTTTGGAAGGCAT
GGTCGACGTTATGAGCAAGAGGTGTGCAAGTAATGGATGCTTGAAGCGTC
CGAGTTATGGCGTGGCCGGTAGCAAAAAAGCGGAATACTGCGCGGTGCAT
GCTTTAGAGGGGATGATCAACATTATGAACAAGAGGTGTGCAAGTGATGA
ATGCTTTAAGCATCCGAGTTATGGCGTGGCCGGTAGCAAGAAAGCAAAAT
ATTGCGTGGTGCATGCTTTGCAAGGAATGGTTAACGTTCAGAACCAAAGG
TGTTCTAGGGATGGGTGCGGTGAGCAACCGAGTTATGGTGTGGCTGGCAG
TAAAAAAACGGAATACTGCACGGGGCATGCTTTAGAGGGGATGGTCACCA
TAGGGAAGAAGAAGTGTGCAAGCGAAAGATGCTATAGGGATCCGACCTAC
GGGGTCCCCGGCAGCAGAATACGGGAGTACTGCATAGTGCATGCTTCAGA
AGGGATGATCAAGGTTGCGAGCAAGAGGTGTGCTAGTGATGGATGTTTGA
AGCAACCGAGGTATGGCGTGGCCGGCGGGAAGATTTTGGAATACTGCGCG
GTGCATGCTTTGGAAGGGATGATCAACGTTGCGAGCAAGAAGTGTGCTGG
TGATGGGTGTTTAAAGCAACCGAGGTATGGCGTGGCCGGTAGCAAAAAAG
CGGAATACTGCGCGGTGCATGCTTTAGAGGGGATGATCAACATTGTGGAC
AAGAGGTGTGCAAGTGATGAATGCTTTAAGCATCCGAGTTATGGCGTGGC
CGGTAGCAAAAAAGCGGAATACTGCGCGGTGCATGCTTTGGAAGGGATGG
TCGACGTTATGAGTAAGAGGTGCTCTTGTAATGGATGCTTTAAGCAACCA
AGTTATGGCATGTCCGGCACGAAGAAACCGGAATATTGCTCGGTACATGC
TTTGGAAGGGATGGTCAACGTCGTGAACAAGAGGTGTGCAAGTGATGGAT
GCATAAAGCATCCGAGTTATGGCGTGGCCGGTAGCAAGAAAAAGGAATAC
TGCGCGGTGCATGCTTTGGAAGGGATGATCTCCGTTAAGAAAAAGAGGTG
TGCAAGTAATATTTCGGCTGCACAAAATCAGGCTAGCAGGAAGCGAATGC
CCGAGACTGGTGCGCGAGAAGTATCTATTTTAGAGAGAAAAAGTACGACC
ACGTTTAAACGCCCCTTTAATAATGGAGTATCAGATGCAGAGAGAGTGAA
AGTTGAGGTGTCCCTATCTCTGTCCTAG
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