mRNA_H-elongata_contig2027.5746.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2027.5746.1
Unique NamemRNA_H-elongata_contig2027.5746.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2027.5746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2027contigH-elongata_contig2027:7430..9287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1858
Cds size1587
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2027.5746.1prot_H-elongata_contig2027.5746.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2027 7511..9097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.9993215-UTR-H-elongata_contig2027:7429..75101622930139.9993215-UTR-H-elongata_contig2027:7429..7510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2027 7430..7510 +
1691679296.3522894-UTR-H-elongata_contig2027:7429..75101691679296.3522894-UTR-H-elongata_contig2027:7429..7510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2027 7430..7510 +
1622930140.099929-UTR-H-elongata_contig2027:9097..92871622930140.099929-UTR-H-elongata_contig2027:9097..9287Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2027 9098..9287 +
1691679296.3769758-UTR-H-elongata_contig2027:9097..92871691679296.3769758-UTR-H-elongata_contig2027:9097..9287Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2027 9098..9287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930140.011152-CDS-H-elongata_contig2027:7510..90971622930140.011152-CDS-H-elongata_contig2027:7510..9097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2027 7511..9097 +
1691679296.3663414-CDS-H-elongata_contig2027:7510..90971691679296.3663414-CDS-H-elongata_contig2027:7510..9097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2027 7511..9097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2027.5746.1

>prot_H-elongata_contig2027.5746.1 ID=prot_H-elongata_contig2027.5746.1|Name=mRNA_H-elongata_contig2027.5746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=529bp
MIDVANKRCASDGCVKRPSYGVAGCKKAEYCALHASKDMIDVASKRCAKD
GCFKRPTYGVVGKKAEFCVVHALEGMINVQSMMCANYGCVKRPSYGLAGS
KKAEFCSAHALEGMINVQSMGCANYGCVKRPSYGPAGSNKAEYCAVHALE
GMVNVARKNPSYSVAGSKQAEYCGVHSLEGIINISNTRRASDGCLKLPSY
GVAGSIKAEYCAVYSLGGMIDVASKRCAKDRCFNHPSYGLAGRTKAVSCA
VNALERMITTQKKGCASDEGVKHPSYGVAGSKEAEYCGMHALEGMIDVAR
KKCCDRYIKRPSYAMADSKKTKNCDVHAWEWKIDVGSKSYSSDGSCMSLG
DGVVGSETPESYVADDPKRMADVAYTWCASNGCCKRPRYGPVCRIKPEYC
SEDAVNGMGTVGKLNSGGGCHTEKMSLVDDHDFIDSRNRCFGNGCWRSAN
DDVAGSAGQEYCAEIVAEGVEFSNAQKPSRTRKRIPETTGPGVCVLQREI
ITSFKHSCHNAEVSDPKGVKIDVSLSLP*
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mRNA from alignment at H-elongata_contig2027:7430..9287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2027.5746.1 ID=mRNA_H-elongata_contig2027.5746.1|Name=mRNA_H-elongata_contig2027.5746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1858bp|location=Sequence derived from alignment at H-elongata_contig2027:7430..9287+ (Himanthalia elongata Himel1 dioecious)
GATGGATGCTTTCTGCGTCCGAGTTATGGCCTATCAGGCAGCAAAAAAGC
GGAATACTGTGCAGTGCATTCTTTAGAAGGGATGATCGACGTTGCGAACA
AGAGATGTGCTAGCGATGGATGCGTTAAGCGTCCGAGTTATGGCGTAGCA
GGCTGCAAAAAAGCGGAATACTGCGCTCTGCATGCTTCAAAAGATATGAT
CGACGTTGCGAGCAAGAGATGTGCTAAGGATGGATGCTTTAAGCGTCCGA
CTTATGGCGTGGTCGGCAAGAAAGCCGAATTTTGCGTGGTCCATGCTTTG
GAAGGTATGATCAACGTGCAGAGCATGATGTGTGCTAACTATGGATGTGT
TAAGCGTCCGAGTTATGGCCTAGCAGGCAGCAAGAAAGCGGAATTTTGTT
CGGCGCATGCTTTGGAAGGGATGATCAACGTGCAGAGCATGGGTTGTGCT
AACTATGGATGCGTTAAGCGTCCGAGTTATGGCCCAGCAGGCAGCAATAA
AGCGGAATACTGTGCGGTGCATGCTTTAGAAGGGATGGTCAACGTTGCGA
GGAAGAATCCGAGTTATAGCGTAGCAGGTAGCAAACAAGCGGAATACTGT
GGAGTACATTCTTTGGAAGGGATAATCAACATTTCGAACACGAGACGTGC
AAGTGATGGATGCTTGAAGCTACCCAGTTATGGCGTGGCAGGCAGCATAA
AAGCGGAATACTGCGCTGTGTACTCTTTGGGAGGAATGATAGACGTTGCG
AGCAAGCGATGTGCTAAGGATCGATGCTTTAATCATCCGAGTTATGGCTT
GGCCGGCAGGACGAAAGCAGTCTCCTGCGCGGTGAATGCTTTGGAAAGGA
TGATCACAACTCAGAAGAAGGGTTGCGCTAGCGATGAAGGAGTGAAGCAT
CCAAGTTATGGAGTAGCAGGCAGTAAGGAAGCGGAATACTGTGGAATGCA
TGCTTTGGAAGGGATGATCGACGTTGCGAGAAAAAAATGTTGTGACAGAT
ACATTAAGCGTCCGAGTTATGCCATGGCCGACAGCAAGAAAACAAAAAAC
TGCGACGTACATGCTTGGGAATGGAAGATCGACGTTGGGAGCAAGAGTTA
TTCTAGCGATGGAAGCTGTATGTCACTGGGCGATGGCGTTGTCGGTAGCG
AAACGCCGGAGTCCTACGTGGCGGATGATCCGAAAAGGATGGCTGACGTT
GCATACACGTGGTGCGCTAGCAATGGATGCTGTAAGCGGCCGAGATATGG
CCCAGTCTGTAGGATCAAGCCGGAGTACTGTAGCGAGGATGCTGTGAATG
GAATGGGCACCGTTGGGAAGTTGAATTCCGGCGGTGGATGCCATACGGAG
AAAATGTCTTTAGTTGATGATCATGATTTTATCGATTCCAGGAATCGTTG
CTTCGGCAACGGATGCTGGAGGAGTGCGAACGACGATGTTGCCGGCAGTG
CGGGTCAGGAGTACTGCGCTGAAATTGTTGCGGAGGGCGTGGAGTTTTCG
AATGCACAAAAACCGTCTAGAACCAGGAAGCGAATCCCCGAGACTACTGG
ACCAGGAGTATGTGTTTTGCAGAGAGAAATAATAACTAGCTTTAAACACT
CCTGTCATAACGCAGAAGTATCAGATCCAAAGGGAGTGAAAATTGATGTC
TCCCTGTCTCTACCCTAGTTAGAAACCTCATCGAAGTTAAAAGTAGCAAA
ACATCTACATGCGGGGTGTTTGCGCTCCGGGGCTATCATGCCTCCAGAGC
GGTCTTAATTAGAATGTTAAAACAAGCAGTTGATACGAAGGTTTGGTTTC
TCAGGGTTGTTCACTGAGTAGAACCGCTCCGCGGAGTGTTTTTTTTTCTT
CAAAACGT
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Coding sequence (CDS) from alignment at H-elongata_contig2027:7430..9287+

>mRNA_H-elongata_contig2027.5746.1 ID=mRNA_H-elongata_contig2027.5746.1|Name=mRNA_H-elongata_contig2027.5746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3174bp|location=Sequence derived from alignment at H-elongata_contig2027:7430..9287+ (Himanthalia elongata Himel1 dioecious)
ATGATCGACGTTGCGAACAAGAGATGTGCTAGCGATGGATGCGTTAAGCG
TCCGAGTTATGGCGTAGCAGGCTGCAAAAAAGCGGAATACTGCGCTCTGC
ATGCTTCAAAAGATATGATCGACGTTGCGAGCAAGAGATGTGCTAAGGAT
GGATGCTTTAAGCGTCCGACTTATGGCGTGGTCGGCAAGAAAGCCGAATT
TTGCGTGGTCCATGCTTTGGAAGGTATGATCAACGTGCAGAGCATGATGT
GTGCTAACTATGGATGTGTTAAGCGTCCGAGTTATGGCCTAGCAGGCAGC
AAGAAAGCGGAATTTTGTTCGGCGCATGCTTTGGAAGGGATGATCAACGT
GCAGAGCATGGGTTGTGCTAACTATGGATGCGTTAAGCGTCCGAGTTATG
GCCCAGCAGGCAGCAATAAAGCGGAATACTGTGCGGTGCATGCTTTAGAA
GGGATGGTCAACGTTGCGAGGAAGAATCCGAGTTATAGCGTAGCAGGTAG
CAAACAAGCGGAATACTGTGGAGTACATTCTTTGGAAGGGATAATCAACA
TTTCGAACACGAGACGTGCAAGTGATGGATGCTTGAAGCTACCCAGTTAT
GGCGTGGCAGGCAGCATAAAAGCGGAATACTGCGCTGTGTACTCTTTGGG
AGGAATGATAGACGTTGCGAGCAAGCGATGTGCTAAGGATCGATGCTTTA
ATCATCCGAGTTATGGCTTGGCCGGCAGGACGAAAGCAGTCTCCTGCGCG
GTGAATGCTTTGGAAAGGATGATCACAACTCAGAAGAAGGGTTGCGCTAG
CGATGAAGGAGTGAAGCATCCAAGTTATGGAGTAGCAGGCAGTAAGGAAG
CGGAATACTGTGGAATGCATGCTTTGGAAGGGATGATCGACGTTGCGAGA
AAAAAATGTTGTGACAGATACATTAAGCGTCCGAGTTATGCCATGGCCGA
CAGCAAGAAAACAAAAAACTGCGACGTACATGCTTGGGAATGGAAGATCG
ACGTTGGGAGCAAGAGTTATTCTAGCGATGGAAGCTGTATGTCACTGGGC
GATGGCGTTGTCGGTAGCGAAACGCCGGAGTCCTACGTGGCGGATGATCC
GAAAAGGATGGCTGACGTTGCATACACGTGGTGCGCTAGCAATGGATGCT
GTAAGCGGCCGAGATATGGCCCAGTCTGTAGGATCAAGCCGGAGTACTGT
AGCGAGGATGCTGTGAATGGAATGGGCACCGTTGGGAAGTTGAATTCCGG
CGGTGGATGCCATACGGAGAAAATGTCTTTAGTTGATGATCATGATTTTA
TCGATTCCAGGAATCGTTGCTTCGGCAACGGATGCTGGAGGAGTGCGAAC
GACGATGTTGCCGGCAGTGCGGGTCAGGAGTACTGCGCTGAAATTGTTGC
GGAGGGCGTGGAGTTTTCGAATGCACAAAAACCGTCTAGAACCAGGAAGC
GAATCCCCGAGACTACTGGACCAGGAGTATGTGTTTTGCAGAGAGAAATA
ATAACTAGCTTTAAACACTCCTGTCATAACGCAGAAGTATCAGATCCAAA
GGGAGTGAAAATTGATGTCTCCCTGTCTCTACCCTAGATGATCGACGTTG
CGAACAAGAGATGTGCTAGCGATGGATGCGTTAAGCGTCCGAGTTATGGC
GTAGCAGGCTGCAAAAAAGCGGAATACTGCGCTCTGCATGCTTCAAAAGA
TATGATCGACGTTGCGAGCAAGAGATGTGCTAAGGATGGATGCTTTAAGC
GTCCGACTTATGGCGTGGTCGGCAAGAAAGCCGAATTTTGCGTGGTCCAT
GCTTTGGAAGGTATGATCAACGTGCAGAGCATGATGTGTGCTAACTATGG
ATGTGTTAAGCGTCCGAGTTATGGCCTAGCAGGCAGCAAGAAAGCGGAAT
TTTGTTCGGCGCATGCTTTGGAAGGGATGATCAACGTGCAGAGCATGGGT
TGTGCTAACTATGGATGCGTTAAGCGTCCGAGTTATGGCCCAGCAGGCAG
CAATAAAGCGGAATACTGTGCGGTGCATGCTTTAGAAGGGATGGTCAACG
TTGCGAGGAAGAATCCGAGTTATAGCGTAGCAGGTAGCAAACAAGCGGAA
TACTGTGGAGTACATTCTTTGGAAGGGATAATCAACATTTCGAACACGAG
ACGTGCAAGTGATGGATGCTTGAAGCTACCCAGTTATGGCGTGGCAGGCA
GCATAAAAGCGGAATACTGCGCTGTGTACTCTTTGGGAGGAATGATAGAC
GTTGCGAGCAAGCGATGTGCTAAGGATCGATGCTTTAATCATCCGAGTTA
TGGCTTGGCCGGCAGGACGAAAGCAGTCTCCTGCGCGGTGAATGCTTTGG
AAAGGATGATCACAACTCAGAAGAAGGGTTGCGCTAGCGATGAAGGAGTG
AAGCATCCAAGTTATGGAGTAGCAGGCAGTAAGGAAGCGGAATACTGTGG
AATGCATGCTTTGGAAGGGATGATCGACGTTGCGAGAAAAAAATGTTGTG
ACAGATACATTAAGCGTCCGAGTTATGCCATGGCCGACAGCAAGAAAACA
AAAAACTGCGACGTACATGCTTGGGAATGGAAGATCGACGTTGGGAGCAA
GAGTTATTCTAGCGATGGAAGCTGTATGTCACTGGGCGATGGCGTTGTCG
GTAGCGAAACGCCGGAGTCCTACGTGGCGGATGATCCGAAAAGGATGGCT
GACGTTGCATACACGTGGTGCGCTAGCAATGGATGCTGTAAGCGGCCGAG
ATATGGCCCAGTCTGTAGGATCAAGCCGGAGTACTGTAGCGAGGATGCTG
TGAATGGAATGGGCACCGTTGGGAAGTTGAATTCCGGCGGTGGATGCCAT
ACGGAGAAAATGTCTTTAGTTGATGATCATGATTTTATCGATTCCAGGAA
TCGTTGCTTCGGCAACGGATGCTGGAGGAGTGCGAACGACGATGTTGCCG
GCAGTGCGGGTCAGGAGTACTGCGCTGAAATTGTTGCGGAGGGCGTGGAG
TTTTCGAATGCACAAAAACCGTCTAGAACCAGGAAGCGAATCCCCGAGAC
TACTGGACCAGGAGTATGTGTTTTGCAGAGAGAAATAATAACTAGCTTTA
AACACTCCTGTCATAACGCAGAAGTATCAGATCCAAAGGGAGTGAAAATT
GATGTCTCCCTGTCTCTACCCTAG
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