mRNA_H-elongata_contig20268.5745.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20268.5745.1
Unique NamemRNA_H-elongata_contig20268.5745.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-16
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            L   L+ + +L+RLGMGWFGG+ITR++Q RT HLYD+RV L+ + STR MKL L  Y  D  A  GSW LL
Sbjct:   38 LDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILL 108
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BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.160e-16
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            L R L+ + +L+RLGMGWFGG+IT++ Q  T HLYD+ V LE + STR MKL L KYS D  AA GSW LL
Sbjct:   53 LGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLL 123
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BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5K0X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.120e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            L R L+ + +L+RLGMGWFGG+IT+++Q    HLYD+ V LE + STR MKL L KYS D  AA GSW LL
Sbjct:   95 LERLLLRRGVLVRLGMGWFGGLITQQSQKDIRHLYDYCVQLELHQSTRKMKLPLDKYSGDSDAAVGSWVLL 165
[Close]
BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.290e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 2 
Query:  326 CHHRTLTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            C    L  +L+ + +L+ LGMGWFGG+ITR++Q RT HLYD+ + L+ + STRSMKL L  Y  D  A  GSW LL
Sbjct:   21 CTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILL 96
[Close]
BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5K5W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.470e-15
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            L R L+ +E+L R+GMGWFGG+IT ++Q  T HLYD+ V LE + STR MK  L KYS D  AA GSW  +
Sbjct:   35 LDRLLLRREVLFRVGMGWFGGLITEQSQKDTRHLYDYCVQLELDQSTRKMKSPLDKYSGDSDAAVGSWLFI 105
[Close]
BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.590e-15
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            L  +L+ + +L+RLGMGWFGG+ITR++Q RT HLYD+RV L+ + STRSMKL L  Y  D  A  GSW LL
Sbjct:  568 LDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILL 638
[Close]
BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5JB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB97_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.600e-15
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            L R L  + +L+RLGMGWFGG+I +++Q  T HLYD+ V LE + STR MKLLL +Y+ D  AA GSW LL
Sbjct:   52 LDRLLFRRGVLVRLGMGWFGGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLLLDEYTGDPDAAVGSWVLL 122
[Close]
BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5JHV4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.010e-15
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            L R L+ + +L+RLGMGWFGG+IT+++Q  T HLYD+ V LE + STR MKL L KYS D  AA GSW LL
Sbjct:  610 LDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLL 680
[Close]
BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5JTC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.330e-15
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSWALL 553
            L R L+ + +L+RLGMGWF G+IT+++Q  T HLYD+ V LE + STR+MKL L KYS D  AA GSW LL
Sbjct:  224 LDRLLLRRGVLVRLGMGWFEGLITQQSQKDTRHLYDYSVQLELDQSTRTMKLPLDKYSGDSDAAGGSWVLL 294
[Close]
BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Match: A0A6H5K4S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.330e-14
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 2 
Query:  341 LTRALVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLLAKYSVDGAAAEGSW 544
            L R L+ + +L+RLGMGWFGG+IT+++Q  T HLYD+ V LE + STR MKL L KYS D  AA GSW
Sbjct:  204 LDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSW 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20268.5745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHL7_9PHAE1.500e-1656.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA94_9PHAE2.160e-1659.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0X8_9PHAE1.120e-1557.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW4_9PHAE1.290e-1551.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W3_9PHAE1.470e-1554.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE1.590e-1557.75C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JB97_9PHAE1.600e-1556.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHV4_9PHAE4.010e-1559.15HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JTC1_9PHAE6.330e-1557.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S7_9PHAE1.330e-1458.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20268contigH-elongata_contig20268:6266..6923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D7FI08
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size660
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.936667-UTR-H-elongata_contig20268:6265..64671622930139.936667-UTR-H-elongata_contig20268:6265..6467Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20268 6266..6467 +
1691679296.3236122-UTR-H-elongata_contig20268:6265..64671691679296.3236122-UTR-H-elongata_contig20268:6265..6467Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20268 6266..6467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.9499016-CDS-H-elongata_contig20268:6467..69231622930139.9499016-CDS-H-elongata_contig20268:6467..6923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20268 6468..6923 +
1691679296.3355443-CDS-H-elongata_contig20268:6467..69231691679296.3355443-CDS-H-elongata_contig20268:6467..6923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20268 6468..6923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20268.5745.1prot_H-elongata_contig20268.5745.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20268 6468..6923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20268.5745.1

>prot_H-elongata_contig20268.5745.1 ID=prot_H-elongata_contig20268.5745.1|Name=mRNA_H-elongata_contig20268.5745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MVRATSRSTLMTSSTSLVRCDCSARLARRRRLLHWPSKHNLCHHRTLTRA
LVNQEILLRLGMGWFGGIITRKAQARTSHLYDFRVFLETNGSTRSMKLLL
AKYSVDGAAAEGSWALLSHCADEDSSEDSENESAFEDGEESGAVGGGSVV
RS
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mRNA from alignment at H-elongata_contig20268:6266..6923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20268.5745.1 ID=mRNA_H-elongata_contig20268.5745.1|Name=mRNA_H-elongata_contig20268.5745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=658bp|location=Sequence derived from alignment at H-elongata_contig20268:6266..6923+ (Himanthalia elongata Himel1 dioecious)
AGGCAGCTCGCCAAACAGCAAGCGCTGCTGTTGTCCATGAACGCTGCGGC
CTTACTCCGCGTTAAGGCCGAGTTTGGTAAGCTGAGGCACAAGGGAGCGT
TGACCACCGAGCAGTTTCAACTGTTAAAGGCCAGAGCGAAACATGGGGCA
GTCACAGACGAGTTGTTGAACTTGCTGCGCCAAGCATGGTCACTGCGCTG
TGATGGTACGAGCGACGAGCAGGAGTACGCTGATGACATCATCAACGTCA
TTAGTGAGATGCGACTGCTCAGCCAGACTAGCTCGACGGCGGCGGCTCCT
GCACTGGCCTAGCAAGCATAATCTGTGCCATCACCGGACCCTCACTCGGG
CACTTGTTAACCAAGAGATACTGCTTCGACTGGGTATGGGTTGGTTCGGG
GGGATCATCACACGAAAGGCCCAAGCACGCACGAGCCACCTCTACGACTT
CAGAGTGTTTCTTGAGACCAACGGCAGCACACGTAGCATGAAACTTCTGC
TGGCAAAGTACTCGGTGGACGGGGCCGCGGCAGAGGGATCTTGGGCGCTG
CTATCGCACTGCGCCGACGAGGACTCTTCAGAGGACAGCGAGAACGAGAG
CGCGTTCGAGGACGGGGAGGAGTCGGGAGCGGTGGGGGGGGGTTCGGTAG
TACGATCG
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Coding sequence (CDS) from alignment at H-elongata_contig20268:6266..6923+

>mRNA_H-elongata_contig20268.5745.1 ID=mRNA_H-elongata_contig20268.5745.1|Name=mRNA_H-elongata_contig20268.5745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig20268:6266..6923+ (Himanthalia elongata Himel1 dioecious)
ATGGTACGAGCGACGAGCAGGAGTACGCTGATGACATCATCAACGTCATT
AGTGAGATGCGACTGCTCAGCCAGACTAGCTCGACGGCGGCGGCTCCTGC
ACTGGCCTAGCAAGCATAATCTGTGCCATCACCGGACCCTCACTCGGGCA
CTTGTTAACCAAGAGATACTGCTTCGACTGGGTATGGGTTGGTTCGGGGG
GATCATCACACGAAAGGCCCAAGCACGCACGAGCCACCTCTACGACTTCA
GAGTGTTTCTTGAGACCAACGGCAGCACACGTAGCATGAAACTTCTGCTG
GCAAAGTACTCGGTGGACGGGGCCGCGGCAGAGGGATCTTGGGCGCTGCT
ATCGCACTGCGCCGACGAGGACTCTTCAGAGGACAGCGAGAACGAGAGCG
CGTTCGAGGACGGGGAGGAGTCGGGAGCGGTGGGGGGGGGTTCGGTAGTA
CGATCGATGGTACGAGCGACGAGCAGGAGTACGCTGATGACATCATCAAC
GTCATTAGTGAGATGCGACTGCTCAGCCAGACTAGCTCGACGGCGGCGGC
TCCTGCACTGGCCTAGCAAGCATAATCTGTGCCATCACCGGACCCTCACT
CGGGCACTTGTTAACCAAGAGATACTGCTTCGACTGGGTATGGGTTGGTT
CGGGGGGATCATCACACGAAAGGCCCAAGCACGCACGAGCCACCTCTACG
ACTTCAGAGTGTTTCTTGAGACCAACGGCAGCACACGTAGCATGAAACTT
CTGCTGGCAAAGTACTCGGTGGACGGGGCCGCGGCAGAGGGATCTTGGGC
GCTGCTATCGCACTGCGCCGACGAGGACTCTTCAGAGGACAGCGAGAACG
AGAGCGCGTTCGAGGACGGGGAGGAGTCGGGAGCGGTGGGGGGGGGTTCG
GTAGTACGATCG
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