mRNA_H-elongata_contig2026.5742.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2026.5742.1
Unique NamemRNA_H-elongata_contig2026.5742.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig2026.5742.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 7.390e-48
Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = 2 
Query:  524 TGSAIDKKRDAREANRIHCRQTRERNREKERLLKEEVEVLSLYKAIVEDGPDLFSCHHVELDAPFSFLCENYYTRLQVAPEEVLGQPLASIVDPRDVYQLRAAVSQIL-NQNSGGXXXXXXXGGVGTSGTMVHLRVVCGGLTFPASMTMVIGSQGMIVVTRLY 1009
            T  A D ++  R ANRIHCR+TRER R  E LLKEEVE+LSLYKA+VE+GPDLFSCH VE DAPFSF CENY+ +LQ+APE+ +G+PLASIVDP D   L  A++++L N+ + G            SG +V LRV CG ++  ASM+MVIGSQG++VVTRLY
Sbjct:   10 TRGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGDSEPG-------SGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLY 165
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BLAST of mRNA_H-elongata_contig2026.5742.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.090e-35
Identity = 85/175 (48.57%), Postives = 117/175 (66.86%), Query Frame = 2 
Query:  488 ERTGRFPTKRRGTGSAIDKKRDAREANRIHCRQTRERNREKERLLKEEVEVLSLYKAIVEDGPDLFSCHHVELDAPFSFLCENYYTRLQVAPEEVLGQPLASIVDPRDVYQLRAAVSQILNQNSGGXXXXXXXGGVGTSGTMVHLRVVCGGLTFPASMTMVIGSQGMIVVTRLYD 1012
            ER+     + RG     D++  +REANRIHC++TR+R RE+ER L E VE+L L ++IVE GPDLFS H+  +DAPFS+LC+N+  RLQ+ PE ++G+ L SIVD R+   LR A+ Q+LN+     XXXXXX        +VH+R+  G +   ASM++  GS G+IVVTRLY 
Sbjct:    5 ERSNSGNGRARGASQKSDER--SREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQ--HXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYS 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2026.5742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN98_9PHAE7.390e-4858.90PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE7.090e-3548.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2026contigH-elongata_contig2026:7927..12308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPAS domain
Ec32 orthologEc-14_006560.1
Exons3
Model size2303
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2026.5742.1prot_H-elongata_contig2026.5742.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2026 8408..11023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.5879292-UTR-H-elongata_contig2026:7926..84071622930139.5879292-UTR-H-elongata_contig2026:7926..8407Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2026 7927..8407 +
1691679296.128828-UTR-H-elongata_contig2026:7926..84071691679296.128828-UTR-H-elongata_contig2026:7926..8407Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2026 7927..8407 +
1622930139.6415167-UTR-H-elongata_contig2026:11023..123081622930139.6415167-UTR-H-elongata_contig2026:11023..12308Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2026 11024..12308 +
1691679296.1635513-UTR-H-elongata_contig2026:11023..123081691679296.1635513-UTR-H-elongata_contig2026:11023..12308Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2026 11024..12308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.5998313-CDS-H-elongata_contig2026:8407..85541622930139.5998313-CDS-H-elongata_contig2026:8407..8554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2026 8408..8554 +
1691679296.138494-CDS-H-elongata_contig2026:8407..85541691679296.138494-CDS-H-elongata_contig2026:8407..8554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2026 8408..8554 +
1622930139.6123183-CDS-H-elongata_contig2026:8950..90421622930139.6123183-CDS-H-elongata_contig2026:8950..9042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2026 8951..9042 +
1691679296.1463594-CDS-H-elongata_contig2026:8950..90421691679296.1463594-CDS-H-elongata_contig2026:8950..9042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2026 8951..9042 +
1622930139.6267784-CDS-H-elongata_contig2026:10725..110231622930139.6267784-CDS-H-elongata_contig2026:10725..11023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2026 10726..11023 +
1691679296.1547883-CDS-H-elongata_contig2026:10725..110231691679296.1547883-CDS-H-elongata_contig2026:10725..11023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2026 10726..11023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2026.5742.1

>prot_H-elongata_contig2026.5742.1 ID=prot_H-elongata_contig2026.5742.1|Name=mRNA_H-elongata_contig2026.5742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MDERTGRFPTKRRGTGSAIDKKRDAREANRIHCRQTRERNREKERLLKEE
VEVLSLYKAIVEDGPDLFSCHHVELDAPFSFLCENYYTRLQVAPEEVLGQ
PLASIVDPRDVYQLRAAVSQILNQNSGGGGGGGSAGGVGTSGTMVHLRVV
CGGLTFPASMTMVIGSQGMIVVTRLYDV*
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mRNA from alignment at H-elongata_contig2026:7927..12308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2026.5742.1 ID=mRNA_H-elongata_contig2026.5742.1|Name=mRNA_H-elongata_contig2026.5742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4382bp|location=Sequence derived from alignment at H-elongata_contig2026:7927..12308+ (Himanthalia elongata Himel1 dioecious)
CGAATCTCTTAAAAACTGCGTGCGGATGGTTGACTGCAGCTCGACGGGAC
CACTGGACTATTAGACGATGGTGCCGCTAGGCGTGTGTGTTCGAACTAAA
AAATAACACCATTTAAAAAATATTACAAAAATACGAAGAACCGCTGTCTC
CTGGACACATCCATCTCGTCATTCGAGTCCAACAACTTTCACTTATTTTT
TTATCTCTCGTCGCCAACAACTGACTGACCCGAGAAAACAAGTTCGCGTT
CAACACGAATTTCTACTGTCAGACAGAGCGCCGGGAGCACCTCTCGCACG
GTCTTATCTTCTACCGCTAGCGTCAATCCACACACATCTATCGAGTTTGT
AGCTTTATTTTGTGAGTGATTATATTTATAGCTATACGAAGTATATTATC
GTGGAGCTGTTAGCTGTTGTCGCCGTTTCGACCAAGCGCGATCGATCTCA
GCTACTACGTATAAATTGGTTCTGCAGAGAAATGGACGAAAGGACCGGGA
GGTTCCCCACCAAACGCCGGGGTACCGGATCGGCAATCGACAAGAAAAGG
GATGCCAGAGAAGCCAATAGGATCCACTGCCGCCAGACGCGCGAGCGCAA
TCGGGAGAAGGAGAGGCTCCTCAAGGAGGTGAAGAAATGAAAAATGAGCG
CCTCTCTCTAGTTTTCGACTCTTTTAGGTACGGCGTCCTGACGACCATAT
TACCGCAGTTGGGGGATACGGCAGTATGGTATAGTATATTATATTTGCAC
GTCGCTGTCTATGTTCGGTATTATGTGCCTGGCTGCAAGCAAAGCCCTCG
TGAGTCCATGGATCGAACGTTTAGCGTCACTGCTCTATGGAGACTTTCAG
AGCGGGGTGCGCGCGCCGCCCACGCCGAGAGGTTTTACACGCCGCGCTGT
CGCCGTATCAAAATCTTATTTCGTCGCCCAACCCCGTATTTCGTGTGAAC
CGTTTGACACATCGCGCGTTTTCCGTGTGCCCCTTGTTACTGCGAATTGA
ACGATCGTATTTTCATGAAATCAGGAAGTCGAGGTGCTGAGTCTGTACAA
GGCTATCGTGGAGGATGGACCCGATCTCTTCTCTTGCCATCACGTGGAAC
TTGATGCTCCGTTCAGGTGTGTCCAACCGCAGAGGTCCCCTGTGCGTGTG
TTGTTTGTTCGGTTGGCGCACATTCAACAATTGCCGAGCGGCTTACTCGT
ATCTAGAATCAACAAATAACTTCCGCGCAGTTCACCAGTACTGTACTTGG
AGGCGAATTTTCTTACAGGCGGACGGACCACGAAAAGTTAACAAGGTTTA
TGGGGCTCACCCGACTTCGATTCGTTATGTAAACGTACAGCTAGTTAGCT
GCGCTCACTGAGCTGTAGTTCGAACAATAATTGACTATGGTGGAAGTACG
TGCCGCATCATGTCGTATTCAGTAAAGTACCTTGTCGAGCTCATCGCCTT
CACCGTTGTTTGAGTCAAAGAATGGCCAGCGCATAGATATCTCACTCGAG
GCATGAGCACTTACCGGGCCTGCTACGATTTTTGCCGGCTTACATTTATT
ATAGTAGTGAGTACTTGAAAGTTTGTGGAAGATAAAAGAAGCAGTCAGCT
TGGCTCGTCTCGGCCATGCGTTCGATCCGCAGAAGTCGCATCTTACTCCT
CAGAGACCTTCTCGTCGTTCGCCATTCCTGCCGATGTAACCCCACTCTAT
CGCTATGCGACATGGTTAGTCAGATGGATATCGTAGCTACTGGGGATAGC
GTAGAAGTTCTCGGTTGATATCAGCGAATAATTAAACAGACGGTCGATCG
TCTCGCGCGCGGGCATGCGGGTGCTACTTGTGTCAACCAACGAAACTACT
CAGTAGATGAAAATGATGATTTATTGGCTAAGCTGTCGGGCGCGCGCTAA
CGTCGGCTGAAGACCGACCCTTTTGTTGGTCGGGGATGATAATTCAGACA
GTCACCACGGAAAACTTGGGGGTTGTGTTGGTCTGTGCGAGTTGTGCTCC
CATCTACGTTGAAGGACTTGCTCTATTGTTGCAAATGCATCGTGACTGAA
ATGGTAATCGTGGCATATTTTAGAGGTCGGTATTAGCGTTGGGTAGAGAG
TTTGAGGCTCGACGAGGGGATCAATCGGCGAATTGGCCCTCTCGACGCTG
ACCGAACGGTTCGAGAGGGGGACTCCGTCCTCGGTTGATTCAAGTGTTCT
GGCGGGGATTTTTGCGGACTAATAACTGGCGGCATGCCCTGCCGCGTGTG
GTGTGGTCCGACGTGACCTTCCAGAAAAGAGCTTTTTAAAGGACAAGTAG
ATGCGATTCGTTCGTCGGTATACTTTGCAGGCATTGAGAAGTAAACCATG
CACGCTCCGATTTCACCATGTGTTCATAGACAAACGGTGTTGGTACCATG
CCCGAGGGGCTCACCGAGCTGATTTCACCGAGCGTGAGGGCGTAATGCTG
AGCGTTGTTATAGAAAAGCCTTGAGCTGCACGACAGCATTCCGTCCGTCT
CCCCCAGCAAACTTCGAACTATTCGTTTTCTTAATATCAATCATCACGAG
GAGCACGACCAACCCCAAGCCTTGCCCCGCTTATTTATAACTCACGATGC
GGAAGACTAACACTCCGTTTCACCCACACCCCCAAGGCCGTGTTAATTGC
AGACTGTACCATCCTGTAGATCGGGCCGTCTCAACAAGTGACTCAGTGCG
CTCTATCAACGGTATTTCACCTACCGTAATTAAGATGTGGCGTAATGTGA
TGGTTGACGCATCGACATTCTCGCTCTGTCCTCCCACGCAATCGTCCAGT
TTCCTCTGCGAGAACTACTACACCCGGCTTCAAGTGGCCCCAGAGGAGGT
CCTGGGACAGCCGCTCGCGAGTATTGTCGACCCCAGGGATGTCTACCAGC
TGAGAGCGGCGGTATCTCAAATCCTCAACCAGAATAGCGGCGGTGGTGGT
GGTGGCGGCAGCGCGGGGGGCGTAGGGACAAGCGGCACGATGGTCCATCT
GCGTGTTGTATGCGGTGGGTTGACATTCCCGGCTAGCATGACAATGGTCA
TCGGCAGCCAGGGTATGATAGTCGTGACGCGACTTTACGATGTGTAGATG
ATCTAACTAATAAGGCCAGGAAGCACACGCCTTTAAATGCCGTGACGAGT
GCCTATTTCACACCCCAGGCGTACACCCAGGGCAGTGTTGACTCTAGCCT
GGGGACCTCGCGTTTTTCTCCGCGAGACATGCTACCGGTAGGAGCGATAA
CCTTCACAGGGGGTGTTGGCTACAGGCGGGGGGGGGGGCTCGCGTTTTCC
CCGCGAGACGTAAGGGTGAATTCTGGGCGCAATGTTTTGCTGCTTGCGTG
AACGACTGATTTCGCTTGCGACATGACACGACACAGTTGCTCTCATTGCA
CAGGCACAGGCACAGGCACAGGCAGGGCTCAAGTAGTTCCGCTGTTTTTA
GTGCTCACTGTGACGCCTGCATTAAACGTTTTTTTTTTGTGTGTGTTTCT
TCTTTCTTGAAATCAATGGGAAAGTTTGGGTTGTATGTCCCGCCGAAGAA
GTGCCGTGTCCGTCAAGTAAGTTTCTCCCCGCCTTCGACTCAGACAAGAC
GCGCATTCACCTTGCAGAGTATTAAACAGGTCGTACCTGTGTATCACAAG
GTTGGTTTCGAGGCTGTTCCCGGTGGTTGATTAGGCTGCGTGAGCCAAGT
TGAAGACGACCATGCCGTAATCTGCGTAAAGTTTTGGAGTGATTCGGAGG
AGGTCACATTTCCTGGTCGGGCATCCCACAGTCGGTAGCTCCCTCCTCCC
AAGGCGAGATCTTCCGTCCGTCTTCTCGCGGGCATTTTGTGGATTAAAAA
GAGAACACTAGGAGGAATGATGCACAGACACGCCCATTAGCCACATCGTC
CGAGTTGGAATTATTGACGAACGGCGCACCTAACTCGGGGAAATATCAAA
CTCGATCGAGCTGGTCTCATAAAACCGGCTCCTTTTAAAGTCAGAATCGT
TCGCAACTTGGGTTGTGAAAAGGGGTTACCTTGTGATAGCTTTAGACTTC
GAGTTATATTGTATGCGTCGGATTTCCATGAACGTAGCCTCGTATTCATG
GCACGTAAAATCTCATGCGGTGGAAGTCGTTTATCGGACGCCACAAACAT
ATCATGTGTTCTGTTTCCTGGAAGCTAGTATGTGCGGAGCTTGAAGCTCA
AGCTCGCAAGATGTTGGTGGGATTTTTATTTATTTTTTATTTATTTTGTA
CTGTATTTCCTTCGCTAGACGCACTATTTGAAGGTAGTGTGCGGATTGTT
CCCGCATGCCTACACTTTAATTTCGGGGATCTTAGTGCGTGCAATACTGG
TGTCCATCGAGGGCACTGAGTTCAAGTTCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig2026:7927..12308+

>mRNA_H-elongata_contig2026.5742.1 ID=mRNA_H-elongata_contig2026.5742.1|Name=mRNA_H-elongata_contig2026.5742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig2026:7927..12308+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAAAGGACCGGGAGGTTCCCCACCAAACGCCGGGGTACCGGATC
GGCAATCGACAAGAAAAGGGATGCCAGAGAAGCCAATAGGATCCACTGCC
GCCAGACGCGCGAGCGCAATCGGGAGAAGGAGAGGCTCCTCAAGGAGATG
GACGAAAGGACCGGGAGGTTCCCCACCAAACGCCGGGGTACCGGATCGGC
AATCGACAAGAAAAGGGATGCCAGAGAAGCCAATAGGATCCACTGCCGCC
AGACGCGCGAGCGCAATCGGGAGAAGGAGAGGCTCCTCAAGGAGGAAGTC
GAGGTGCTGAGTCTGTACAAGGCTATCGTGGAGGATGGACCCGATCTCTT
CTCTTGCCATCACGTGGAACTTGATGCTCCGTTCAGGAAGTCGAGGTGCT
GAGTCTGTACAAGGCTATCGTGGAGGATGGACCCGATCTCTTCTCTTGCC
ATCACGTGGAACTTGATGCTCCGTTCAGTTTCCTCTGCGAGAACTACTAC
ACCCGGCTTCAAGTGGCCCCAGAGGAGGTCCTGGGACAGCCGCTCGCGAG
TATTGTCGACCCCAGGGATGTCTACCAGCTGAGAGCGGCGGTATCTCAAA
TCCTCAACCAGAATAGCGGCGGTGGTGGTGGTGGCGGCAGCGCGGGGGGC
GTAGGGACAAGCGGCACGATGGTCCATCTGCGTGTTGTATGCGGTGGGTT
GACATTCCCGGCTAGCATGACAATGGTCATCGGCAGCCAGGGTATGATAG
TCGTGACGCGACTTTACGATGTGTAGTTTCCTCTGCGAGAACTACTACAC
CCGGCTTCAAGTGGCCCCAGAGGAGGTCCTGGGACAGCCGCTCGCGAGTA
TTGTCGACCCCAGGGATGTCTACCAGCTGAGAGCGGCGGTATCTCAAATC
CTCAACCAGAATAGCGGCGGTGGTGGTGGTGGCGGCAGCGCGGGGGGCGT
AGGGACAAGCGGCACGATGGTCCATCTGCGTGTTGTATGCGGTGGGTTGA
CATTCCCGGCTAGCATGACAATGGTCATCGGCAGCCAGGGTATGATAGTC
GTGACGCGACTTTACGATGTGTAG
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