mRNA_H-elongata_contig20259.5740.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20259.5740.1
Unique NamemRNA_H-elongata_contig20259.5740.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 5.310e-120
Identity = 206/300 (68.67%), Postives = 222/300 (74.00%), Query Frame = 2 
Query:    2 GCMNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAGVSGTMSAGGMPGATMGL-----GTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAE---RNKQQAFGGMQGGQQWGV--GQQQFQAQGQXXXXXXXX---TQAQGFAGQGQWGQQXXXXXXX-VHAGYGNGGYAGG 859
            G +N  AFDEIHRAC+DIPVNKKIFVRGLPWET DQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFK MD A AAL NPEK+IDGR+SLCNLAALRSSQPLP R  G    M  G M G   G+     G S +DVSARKIF+RGLSWDTT +SLR +FS +GELED VVTTDRA+GKSKGYGFVTFR+A +A AAVAEPEKQLDGRLTHCNIAAE     K Q +GG Q GQ WG+   QQQ+ AQGQ               GF GQ QWGQQ        V   YGNG YAGG
Sbjct:  142 GSVNPGAFDEIHRACDDIPVNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPARAGG---GMQGGAMQGGAGGMMXXAVGGSGEDVSARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASNRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGVGGGDXXXXGFGGQXQWGQQQQFGAPQGVQQAYGNGAYAGG 438
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 7.220e-116
Identity = 192/271 (70.85%), Postives = 208/271 (76.75%), Query Frame = 2 
Query:    2 GCMNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAG--VSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAER---NKQQAFGGMQGGQQWGV--GQQQFQAQGQXXXXXXXXTQAQGFAGQGQWG 793
            G +N  AFDEIHRAC+DIPVNKKIFVRGLPWET DQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFK MD A AAL NPEK+IDGR+SLCNLAALRSSQPLPQR  G    G M  G        +G S +D+SARKIF+RGLSWDTT +SLR +FS +GELED VVTTDRA+GKSKGYGFVTFRYA +A AAVAEPEKQLDGRLTHCNIAAE     K Q +GG Q GQ WG+   QQQ+ AQGQ               G GQWG
Sbjct:   42 GSVNPGAFDEIHRACDDIPVNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGVMQGGAGXXXXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRYAVNAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQ---------------GSGQWG 297
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: A0A388KX58_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KX58_CHABU)

HSP 1 Score: 188 bits (477), Expect = 2.500e-51
Identity = 101/221 (45.70%), Postives = 139/221 (62.90%), Query Frame = 2 
Query:    2 GCMNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAGVSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAERNKQQA 664
            G   S   DEI    +  P ++K+FVRGL WETT Q+LR  F ++GEI E  V+ DK T KS+G+GF+TFK MDSAQ AL  P K IDGR+++CNLAA              +GT+  GG  G   G      D S RK++I GLS++T+ ++L  +F  +GE+E+  V  D+ATGKS+G+GFVT++    AN A++EP + +DGR  HC +AAE   Q+A
Sbjct:   53 GTRYSGVADEIREVASKDPAHRKLFVRGLAWETTSQALRDAFAEFGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALREPSKKIDGRITVCNLAA--------------AGTL--GGSQGGGGG------DQSQRKLYIGGLSYETSTETLLNIFGQFGEIEEGSVAYDKATGKSRGFGFVTYKTVEGANRALSEPTRTIDGRTVHCKLAAEGQAQKA 251
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: A0A1W0A0X4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0X4_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.880e-48
Identity = 95/217 (43.78%), Postives = 132/217 (60.83%), Query Frame = 2 
Query:    8 MNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAAL-RSSQPLPQ---RVAGVSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAE 646
             + + F+EI    +   V++KIF+RGLPW+ T   LR  F ++G + EA V++DK T KSKG+GF+ F  M++A   L      I+GR   C LAA   + +P PQ   R+   + T SA  +      +G   D+   RK+F+RGL WDT A+SL   F  YG++EDV VT DR TGKSKGYGF+ FR+   A  A+A+P K +DGR THCN+A +
Sbjct:   58 QHESLFNEIKTMASVDIVHRKIFIRGLPWDLTSNGLREYFNKFGPVDEAIVIVDKSTGKSKGFGFLVFPDMETADIVLKAQPHEIEGRKCPCKLAATPHTEEPTPQPSNRIKNSANTSSAANILQPQQDVGPPGDEAD-RKLFVRGLHWDTHAESLNAEFKKYGDIEDVTVTKDRQTGKSKGYGFIVFRHQMGARRALAQPTKVIDGRSTHCNLAIQ 273
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: A0A2R6X2I3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X2I3_MARPO)

HSP 1 Score: 179 bits (454), Expect = 4.580e-48
Identity = 95/221 (42.99%), Postives = 134/221 (60.63%), Query Frame = 2 
Query:    2 GCMNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAGVSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAERNKQQA 664
            G   S   D+I    +  P ++K+FVRGL WETT Q+LR  FEQYGEI E  V+ DK T KS+G+GF+TFK MDSAQ AL  P K IDGR+++CNLA+  S+                           T+A D + RK++I GLS++T++D+L  +FS YGE+E+  V  D+ T KS+G+ FVTF+   +A  A+ +P K ++GR     +AAE  K++A
Sbjct:   60 GSQFSAVADDIRDVASKDPAHRKLFVRGLAWETTSQALRDAFEQYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKEPSKNIDGRITVCNLASSGST---------------------------TTATDQAQRKLYIGGLSYETSSDTLLTIFSQYGEIEEGAVAYDKNTNKSRGFAFVTFKTLEAAKRAMDDPNKNIEGRHVIVKLAAEGQKEKA 253
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: D8RYI0_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RYI0_SELML)

HSP 1 Score: 176 bits (446), Expect = 3.710e-47
Identity = 93/221 (42.08%), Postives = 135/221 (61.09%), Query Frame = 2 
Query:    2 GCMNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAGVSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAERNKQQA 664
            G   S   D+I    +  P ++K+FVRGL WETT Q LR  FEQ+GEI E  V++DK T KS+G+GF+TFK MDSAQ AL  P K IDGR+++CNLA++              GT  +GG            +D + RK++I GLS++T+ ++L  +FS YGE+E+  V  D+ T KS+G+ FVT++   +A  A+ +P K ++GR     +AAE  K++A
Sbjct:   59 GSQYSAVADDIREVASKDPAHRKLFVRGLAWETTSQDLRDAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASV--------------GTSGSGG-----------TNDQAQRKLYIGGLSYETSNETLLNIFSKYGEIEEGAVAYDKNTNKSRGFAFVTYKTVEAARNAIDDPNKTIEGRHVIVKLAAEGQKEKA 254
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: A0A0C9QX59_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_1572 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9QX59_9SPER)

HSP 1 Score: 177 bits (448), Expect = 4.980e-47
Identity = 98/219 (44.75%), Postives = 130/219 (59.36%), Query Frame = 2 
Query:    2 GCMNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAGVSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAERNKQ 658
            G +N    +EI    +  P ++K+FVRGL WET+ Q+L A FEQYGEI E  V+MDK T KS+G+GFVTFK MDSAQ AL  P K IDGR+++ NLAA  SS                   PG          D++ RK++I GLS+DT  + L  +FS YGE+E+  V  D+ T KS+G+ FVTF+   +A  A+ EP K +DGR     +AAE  K+
Sbjct:   55 GSLNPAIAEEIRDVASKDPAHRKLFVRGLAWETSSQTLCAAFEQYGEIEEGAVIMDKNTGKSRGFGFVTFKHMDSAQRALKEPSKTIDGRITISNLAASSSS-------------------PGQNA-------DLAQRKLYIGGLSYDTPNEKLLEVFSKYGEIEEGSVAYDKKTNKSRGFAFVTFKTVEAAKRALKEPNKNIDGRGVTVKLAAEGQKE 247
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: A0A2K1L9M1_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9M1_PHYPA)

HSP 1 Score: 174 bits (441), Expect = 5.460e-46
Identity = 91/219 (41.55%), Postives = 131/219 (59.82%), Query Frame = 2 
Query:    2 GCMNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAGVSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAERNKQ 658
            G +     D+I    +  PV++K+FVRGL WET+  +LR  FEQYGE+ EA V+ DK T KS+G+GF+TFK MDSA  AL  P K IDGR+++CNLA+  S+                          GTS+ D + RK++I GLS+DTT+D+L  +FS YGE+E+  +  D+ T KS+G+ FVTF+    A  A+ +  K ++GR     +AAE  ++
Sbjct:   73 GSLFPAVADDIRDIASKDPVHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALKEPSKNIDGRITVCNLASAGSTS-------------------------GTSSTDQAQRKLYIGGLSYDTTSDTLLNIFSQYGEIEEGAIAYDKNTNKSRGFAFVTFKSIEGAKRAIEDSNKSIEGRHVTVKLAAEGQRE 266
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: A0A1V9YJ91_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJ91_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.280e-45
Identity = 100/241 (41.49%), Postives = 135/241 (56.02%), Query Frame = 2 
Query:    8 MNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAGVSGTMSAGGMPGATMGLG-----------------------TSAD-----DVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAE 646
             + + F+EI    +    ++KIFVRGL WE T   LR  F ++G +  ATV+MDK+T KSKG+GFVTF  M+SA AAL      IDGR   CNLAA + S    +     S T      P AT                           T++D     D + RK+F+RGL WDT AD++   F  YG++EDV +T DR TGKSKGYGF+ +R+  +A  A+A+P K +DGR THCN+A++
Sbjct:   48 QHDSIFNEIKTMASADIAHRKIFVRGLAWEATSDKLRQHFVRFGPVQNATVIMDKVTGKSKGFGFVTFDDMESANAALKAQPHDIDGRKCPCNLAAAQDSSATSRHKQS-SYTAPHAAPPAATXXXXXXXXXXXXXAQQTAAPVPSNAPPTASDSGPPGDEADRKLFVRGLHWDTQADAVTAEFQKYGDIEDVAITKDRQTGKSKGYGFIVYRHQMAAKRALAQPMKIIDGRNTHCNLASQ 287
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BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Match: A0A2K1JG53_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG53_PHYPA)

HSP 1 Score: 173 bits (438), Expect = 1.440e-45
Identity = 95/219 (43.38%), Postives = 134/219 (61.19%), Query Frame = 2 
Query:    2 GCMNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSSQPLPQRVAGVSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTADSLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQLDGRLTHCNIAAERNKQ 658
            G +     D+I  + +  PV++K+FVRGL WET+  +LR  FEQYGE+ EA V+ DK T KS+G+GFVTFK MDSAQ AL  P K IDGR+++CNLA                   SAGG  G      TS+ D + RK++I GLS+DTT+D+L  +FS +GE+E+  +  D+ T KS+G+ FVTF+    A  A+ +  K ++GR     +AAE  ++
Sbjct:   73 GSLFPAVADDIRDSASKDPVHRKLFVRGLAWETSSVALREAFEQYGEVEEACVITDKGTGKSRGFGFVTFKHMDSAQRALKEPSKNIDGRITVCNLA-------------------SAGGTSG------TSSSDQAQRKLYIGGLSYDTTSDTLLNIFSQHGEIEEGAIAYDKNTNKSRGFAFVTFKTIDGAKRAMEDSNKIIEGRHVTVKLAAEGQRE 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20259.5740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN41_ECTSI5.310e-12068.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMW4_9PHAE7.220e-11670.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A388KX58_CHABU2.500e-5145.70Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A1W0A0X4_9STRA1.880e-4843.78Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2R6X2I3_MARPO4.580e-4842.99Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
D8RYI0_SELML3.710e-4742.08Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A0C9QX59_9SPER4.980e-4744.75TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_... [more]
A0A2K1L9M1_PHYPA5.460e-4641.55Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A1V9YJ91_9STRA1.280e-4541.49Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2K1JG53_PHYPA1.440e-4543.38Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20259contigH-elongata_contig20259:238..4879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score176.0
Seed ortholog evalue2.7e-41
Seed eggNOG ortholog88036.EFJ30434
KEGG koko:K12741
KEGG Pathwayko03040,map03040
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.UBP1-associated protein 2C-like
EggNOG OGs37M3X@33090,3GFRS@35493,KOG0118@1,KOG0118@2759
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterized protein
Ec32 orthologEc-06_008310.1
Exons8
Model size1495
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20259.5740.1prot_H-elongata_contig20259.5740.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20259 245..4330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.2370765-UTR-H-elongata_contig20259:237..2441622930139.2370765-UTR-H-elongata_contig20259:237..244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20259 238..244 +
1691679295.9647665-UTR-H-elongata_contig20259:237..2441691679295.9647665-UTR-H-elongata_contig20259:237..244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20259 238..244 +
1622930139.3936105-UTR-H-elongata_contig20259:4330..48791622930139.3936105-UTR-H-elongata_contig20259:4330..4879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20259 4331..4879 +
1691679296.0528672-UTR-H-elongata_contig20259:4330..48791691679296.0528672-UTR-H-elongata_contig20259:4330..4879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20259 4331..4879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.2514253-CDS-H-elongata_contig20259:244..2951622930139.2514253-CDS-H-elongata_contig20259:244..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 245..295 +
1691679295.9776466-CDS-H-elongata_contig20259:244..2951691679295.9776466-CDS-H-elongata_contig20259:244..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 245..295 +
1622930139.2665672-CDS-H-elongata_contig20259:1499..15921622930139.2665672-CDS-H-elongata_contig20259:1499..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 1500..1592 +
1691679295.987123-CDS-H-elongata_contig20259:1499..15921691679295.987123-CDS-H-elongata_contig20259:1499..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 1500..1592 +
1622930139.2833111-CDS-H-elongata_contig20259:1876..19901622930139.2833111-CDS-H-elongata_contig20259:1876..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 1877..1990 +
1691679295.9963098-CDS-H-elongata_contig20259:1876..19901691679295.9963098-CDS-H-elongata_contig20259:1876..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 1877..1990 +
1622930139.2981339-CDS-H-elongata_contig20259:2262..24381622930139.2981339-CDS-H-elongata_contig20259:2262..2438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 2263..2438 +
1691679296.00597-CDS-H-elongata_contig20259:2262..24381691679296.00597-CDS-H-elongata_contig20259:2262..2438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 2263..2438 +
1622930139.314748-CDS-H-elongata_contig20259:2537..27091622930139.314748-CDS-H-elongata_contig20259:2537..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 2538..2709 +
1691679296.0156026-CDS-H-elongata_contig20259:2537..27091691679296.0156026-CDS-H-elongata_contig20259:2537..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 2538..2709 +
1622930139.338809-CDS-H-elongata_contig20259:3701..38131622930139.338809-CDS-H-elongata_contig20259:3701..3813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 3702..3813 +
1691679296.0253117-CDS-H-elongata_contig20259:3701..38131691679296.0253117-CDS-H-elongata_contig20259:3701..3813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 3702..3813 +
1622930139.3564005-CDS-H-elongata_contig20259:3917..40091622930139.3564005-CDS-H-elongata_contig20259:3917..4009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 3918..4009 +
1691679296.0342965-CDS-H-elongata_contig20259:3917..40091691679296.0342965-CDS-H-elongata_contig20259:3917..4009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 3918..4009 +
1622930139.3777914-CDS-H-elongata_contig20259:4201..43301622930139.3777914-CDS-H-elongata_contig20259:4201..4330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 4202..4330 +
1691679296.0431695-CDS-H-elongata_contig20259:4201..43301691679296.0431695-CDS-H-elongata_contig20259:4201..4330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20259 4202..4330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20259.5740.1

>prot_H-elongata_contig20259.5740.1 ID=prot_H-elongata_contig20259.5740.1|Name=mRNA_H-elongata_contig20259.5740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
MNSTAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEAT
VVMDKMTQKSKGYGFVTFKGMDSAQAALINPEKIIDGRMSLCNLAALRSS
QPLPQRVAGVSGTMSAGGMPGATMGLGTSADDVSARKIFIRGLSWDTTAD
SLRVLFSPYGELEDVVVTTDRATGKSKGYGFVTFRYATSANAAVAEPEKQ
LDGRLTHCNIAAERNKQQAFGGMQGGQQWGVGQQQFQAQGQGAGQWGGGT
QAQGFAGQGQWGQQQQIQAQGVHAGYGNGGYAGGQGYGTNGAFSTGQAAG
GAGAWGGQQQGF*
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mRNA from alignment at H-elongata_contig20259:238..4879+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20259.5740.1 ID=mRNA_H-elongata_contig20259.5740.1|Name=mRNA_H-elongata_contig20259.5740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4642bp|location=Sequence derived from alignment at H-elongata_contig20259:238..4879+ (Himanthalia elongata Himel1 dioecious)
AGGATGTATGAACTCGACCGCTTTCGACGAGATCCACCGGGCCTGCAATG
ATATTCCGGTACGATTGTTGATTTTGAAGATTGTCGAATATTGACTCATG
GGAAGACAGACAGGTATCTCGATTTGATGTTGCCCTTAACCCTTTTGGAA
CTGGATTTCAAGTTTTATCTTGAATTTAATGTCTAAAAAACAGATCGAGG
TTCCATAGGGGTTAAACTTGTCATTTTTTATTGCTGTGAAAATCCCTCGG
TTTATAATACAGTAACCACTGTATGTTGTTTATTTTGGAGTTTAGCGTAA
GTATAAAGTGTAATAATGGTCTTCTCCACGACATATGCTTTTTCTCCAAT
TCGACGATCTTTGAGGAATCAACTTTATTCCGTTTATGTTTTTCTGCTGA
CTGTTCGTATGTAGCCGGTCGAATTTGTCGATAGTTGTGCCCAAAGTCGG
TTCAAGGGTGTATATCAGAGAGTGTAAAATTCAGGCTTAAAAACTGCATA
GCTAATCAGAAAATTGCAAGATGCTGCGTTATAGACCATCAGCTTGAGTT
AACTATTGGATATAGCAAGCAAATCCTGCAGATTTGAACGTTTGGAGAGT
AAAGGTCACGCGTAGTCCAAGGGTTATGGTCAGGAACGTGTCTAGACGCC
CCCAGTTTCTTTTCGTCCTAGTGGCGGTAGAGGCGATACCACTACTAATA
GGAACAGTCCTCATAATATGAAGATGTGTTGAATACAACATATATTATCG
TAGTTCAAAGATTCCATTGAACCGATATACTTACTAATGGGAATACGATC
AATACCGTGTACACATTCGAACCTGACGATAGTTGATCCCCTGGACTGCA
CCTCCCACGGCGCTAAGAAGGTGTGGATGTTCGGAGGGTTGGAATGAGTT
TATTTATTTTTAAAATAAAAATAAATGTGACGTGCTTCTAGTGTGCTGTA
AACTCGTTAGTCGAAGGACACCAAAGTTCACGAATAATTATATTCATCCC
AGTAAAAACGCCTCCTCACAACGCTCCAAATTATTTTCTTCATTGGTATC
GGCCCCATGCCTGGCGTGTGGACCTACGTCTTACTTCTAACCGGAGCCGT
GTTTGATCTGTAATCGTGCGGCTTTGTTCGTCAGGTAAGGGCTCTTGGGT
AATAAATGTTAAGTGGATAGACACGCACTTTCACTGACCATGAAATGAAA
TCATATTCCATAATAGTTAATGTTTCTATGAATATGAACATGTTTCGTTA
ACGATTAAACAGGTCAACAAGAAGATCTTCGTTCGTGGTCTGCCATGGGA
GACCACCGATCAATCTCTTCGGGCTGTGTTCGAGCAGTATGGAGAGATTG
CCGAGGTGGGATGGTCTAGAATTTACGAATCGTCAATACTTTGAACATGC
GAGGAGGACCAATCCGTTCGTTGGAGGTGGCCATCGTAAGAGGCGTAAGG
CATAGCGGTGTACCGGTTTGGCGCGACGTGGTCCTTTTTTAATTTGTTGA
GTAGTTTTCCGATAAACACAACCTCTAATGGATTGTAGTTTAGGTTTCAA
AAAAGGAATATTTTGGTTAACGGAGCCGCTGAAAAGCTTCGCACCTGTCT
ACACCGTCTAAAACATCTCCTTTCTCCAATTCTCACCAGGCGACCGTGGT
TATGGATAAAATGACGCAGAAGTCCAAGGGATATGGCTTCGTCACTTTCA
AAGGGATGGACAGCGCCCAAGCTGCTCTTATAAACCCCGAGAAGATTATT
GACGTTAGTACATATCACATTTCCATAAGTAGACCCGCCTGCATATATCA
ATAGTATGAAATGTCTTCAAACGATATTTTCCTTCTCGATCCATGGTCTC
TTGAAACTGTATATGTCATTAAAAAATCACCTCGACAGCTTAAAATGTAC
CTATGCGCCATCCAGACCGAACGTGGTCATGTTCCTTGTTTACCCATGTA
AAAAGGTTGTTCTTGGTTGTAAGCTTGTATTCATCTCAAGAAACCATGTT
TGCGTCCATCTTTTGCATTCGACAGGGACGGATGAGCCTATGTAACTTGG
CTGCACTGCGCTCGTCGCAGCCATTGCCTCAGAGGGTAGCAGGCGTTTCT
GGTACAATGTCGGCTGGTGGTATGCCGGGAGCAACTATGGGCCTGGGTAC
TTCAGCAGATGATGTCAGCGCCAGGAAGATCTTCATTAGGGGACTTTCAT
GGTGAGGATTAATTGCCAATTCCTCTAAAGGACTCAATACCTCAACACGT
TTGATCATCATAAGTAACCTGAATTTTCCCTCTATGTTTTACTGCGGCAG
GGACACAACGGCGGATTCTTTGCGCGTTCTGTTTTCACCGTACGGTGAGC
TTGAAGATGTTGTTGTGACAACGGACCGTGCCACCGGAAAGTCGAAGGGT
TACGGCTTCGTGACCTTTCGCTATGCGACCTCTGCGAACGCTGCTGTTGC
CGAGCCGGAAAAGCAACTTGATGTGAGTACCGATTAAAGACCATGTTTTG
ATAATAACATTAAACACGTACTTATTTTCTCATCGTATTTGTTGGCAAAA
TATTTTATTTAAAAAAAACTTGAACTCATTCCAACCCTCGAACATCCACC
CCTTCTTAGCACCATAAGAGGTGCAGTCCAGGGGACCAACTATCGTCAGG
TTCGAATGTGTACAATACTAACCTTGAGTACAAAATCTTCACACATGATA
AATCGTAGTAATTTCATTGGTACGTGAGGTATGAAATTATTGTAGTTATC
ATATAGGAACGCCAAACCAAAGCCTAGGGGGTGAACTGTGTGTGGTGGTT
AGGAAGGGTTAGGCACAGCATTGTACATATTATGTTTCAGTTAAATTTCG
GGTAGCCTAACATAGAAGGGATCTTACAGTAGCAAAATTTTAGATTATTG
CTGCCTAAGGGGGATGGAAATAAAGTTAAGAGGGGTATGCCAACCAAAAC
TTAACGCGTGAGCTGCTGCTCTGTCATCCTTATCATAATGAGACGACCCA
TAAACCTCCGTGAGTTGTAAACATCTACTGTCAGAGAAACCCCCTTTTCC
GTATAATTACCATAGCATCACAATGTGCTCCAAAATTATATTACCTCAAG
ATCATAACCCTAGCTGTTCTTTACCCCCATCACGTTATTCCTCCTCCTGT
GAAATAGCCGTAACTACGAGTAACATTGTCTTCATTTATTTTTAAAACTT
CTGGTGACGTCCGTACCTTGATTTGCCTCCTTTTCTCACCATCACCTTGG
TAAACTCCAGAGAGACCCGAGAGGCATGTGTATTTCACACGTTAAGTTTC
GGTTGGCATGATGATAAACCGTGGTCTTTGACCCTCTTAACTTTTTCTCC
GTCCCTTAGGCAACAATAATCTAAAATTTTAGCCGTGCCCTGAAACGCAT
GAAAATTTGCAAGAAACCTGCTGAAAAAATCCACGCTTCGGCTGATGCTG
TTTTGTTTTCAAAGGGTCGCCTGACGCACTGTAACATTGCTGCTGAGAGG
AACAAGCAACAGGCCTTCGGTGGCATGCAAGGAGGTCAACAATGGGGCGT
TGGTCAGCAGCAGTTCCAGGCTCAAGGTAAGCGCCGTTGGTTCAAAATAA
TTTGGATTTTGCTGTACATGTACTGAAATCTCGAAATAGCTTTTATAGAT
CCAAACCAATTCTGATCGCATTTTTGGTAGGTCAAGGAGCTGGACAGTGG
GGTGGTGGAACTCAAGCTCAAGGCTTCGCTGGTCAAGGGCAATGGGGGCA
ACAGCAGCAAATCCAGGCGCAGGTATCAACGTCAGGCCTTGTGTAACTGC
GTCTCATCCCCAGGCCACAACCTCGTTCTTGGTCACGATATGGGTTTGAC
TAGAGAACGACACTTGACTTTGATGTTGGACAAACATACTTCAATTGACC
TATTATATGTTCTGCAGCCGAAGTCACTTGACTTCACAGCGTATAACCCC
CGCTCGTGCAACAGGGCGTACACGCAGGGTATGGTAATGGAGGGTACGCC
GGTGGCCAAGGCTATGGTACAAACGGTGCCTTCTCAACTGGACAGGCTGC
CGGAGGCGCGGGTGCGTGGGGAGGCCAGCAGCAGGGTTTCTGAGCATGAC
AGAATAACGGTCGGCGACAGCGGGAGATGTGGTGGACTGATTCATATATT
GTGTTAATCGGAATTTGCCAAGTTTCACCTCAAGCGTAGAGCACTGCGCT
TAAGTGATTGAGGAACCCCAGTTCTTTAGGAATGAGTGAGCGGCGCGTCA
AGAGTCAAATAAGTTGTCCCGAGCGGCTGCCGTGGCATGCGTTCTGTTAA
GGCTGACTCTGGATTGGAGCTGTAACGAAATTCTGAACCCCAAGGAAGTG
TTTGACTACTAAAAAAAACTGCGTATGGCAACTTAAGCCCGAACAAAAAG
TGGATTTCTGCTCTCGAACATCGTGCGATCACAAATGCCTTTATGTACCA
TACCGCCCGTGAGGTTAAATATATGTCGAACGGGATTTGTTGGTGTCACG
ATTAATATATTCTAATGATCCCCTGCACGGATATATACAAGCCGATATAT
TCCCAAAAAGCGATTTTAAATCAATTTCGTTTTTTTCGCTGAATTATTTT
GCACCTGTTCACATCCCATGGAGAGCGGGGCCTACCATCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig20259:238..4879+

>mRNA_H-elongata_contig20259.5740.1 ID=mRNA_H-elongata_contig20259.5740.1|Name=mRNA_H-elongata_contig20259.5740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig20259:238..4879+ (Himanthalia elongata Himel1 dioecious)
ATGAACTCGACCGCTTTCGACGAGATCCACCGGGCCTGCAATGATATTCC
GATGAACTCGACCGCTTTCGACGAGATCCACCGGGCCTGCAATGATATTC
CGGTCAACAAGAAGATCTTCGTTCGTGGTCTGCCATGGGAGACCACCGAT
CAATCTCTTCGGGCTGTGTTCGAGCAGTATGGAGAGATTGCCGAGGTCAA
CAAGAAGATCTTCGTTCGTGGTCTGCCATGGGAGACCACCGATCAATCTC
TTCGGGCTGTGTTCGAGCAGTATGGAGAGATTGCCGAGGCGACCGTGGTT
ATGGATAAAATGACGCAGAAGTCCAAGGGATATGGCTTCGTCACTTTCAA
AGGGATGGACAGCGCCCAAGCTGCTCTTATAAACCCCGAGAAGATTATTG
ACGCGACCGTGGTTATGGATAAAATGACGCAGAAGTCCAAGGGATATGGC
TTCGTCACTTTCAAAGGGATGGACAGCGCCCAAGCTGCTCTTATAAACCC
CGAGAAGATTATTGACGGACGGATGAGCCTATGTAACTTGGCTGCACTGC
GCTCGTCGCAGCCATTGCCTCAGAGGGTAGCAGGCGTTTCTGGTACAATG
TCGGCTGGTGGTATGCCGGGAGCAACTATGGGCCTGGGTACTTCAGCAGA
TGATGTCAGCGCCAGGAAGATCTTCATTAGGGGACTTTCATGGGACGGAT
GAGCCTATGTAACTTGGCTGCACTGCGCTCGTCGCAGCCATTGCCTCAGA
GGGTAGCAGGCGTTTCTGGTACAATGTCGGCTGGTGGTATGCCGGGAGCA
ACTATGGGCCTGGGTACTTCAGCAGATGATGTCAGCGCCAGGAAGATCTT
CATTAGGGGACTTTCATGGGACACAACGGCGGATTCTTTGCGCGTTCTGT
TTTCACCGTACGGTGAGCTTGAAGATGTTGTTGTGACAACGGACCGTGCC
ACCGGAAAGTCGAAGGGTTACGGCTTCGTGACCTTTCGCTATGCGACCTC
TGCGAACGCTGCTGTTGCCGAGCCGGAAAAGCAACTTGATGGACACAACG
GCGGATTCTTTGCGCGTTCTGTTTTCACCGTACGGTGAGCTTGAAGATGT
TGTTGTGACAACGGACCGTGCCACCGGAAAGTCGAAGGGTTACGGCTTCG
TGACCTTTCGCTATGCGACCTCTGCGAACGCTGCTGTTGCCGAGCCGGAA
AAGCAACTTGATGGTCGCCTGACGCACTGTAACATTGCTGCTGAGAGGAA
CAAGCAACAGGCCTTCGGTGGCATGCAAGGAGGTCAACAATGGGGCGTTG
GTCAGCAGCAGTTCCAGGCTCAAGGGTCGCCTGACGCACTGTAACATTGC
TGCTGAGAGGAACAAGCAACAGGCCTTCGGTGGCATGCAAGGAGGTCAAC
AATGGGGCGTTGGTCAGCAGCAGTTCCAGGCTCAAGGTCAAGGAGCTGGA
CAGTGGGGTGGTGGAACTCAAGCTCAAGGCTTCGCTGGTCAAGGGCAATG
GGGGCAACAGCAGCAAATCCAGGCGCAGGTCAAGGAGCTGGACAGTGGGG
TGGTGGAACTCAAGCTCAAGGCTTCGCTGGTCAAGGGCAATGGGGGCAAC
AGCAGCAAATCCAGGCGCAGGGCGTACACGCAGGGTATGGTAATGGAGGG
TACGCCGGTGGCCAAGGCTATGGTACAAACGGTGCCTTCTCAACTGGACA
GGCTGCCGGAGGCGCGGGTGCGTGGGGAGGCCAGCAGCAGGGTTTCTGAG
GCGTACACGCAGGGTATGGTAATGGAGGGTACGCCGGTGGCCAAGGCTAT
GGTACAAACGGTGCCTTCTCAACTGGACAGGCTGCCGGAGGCGCGGGTGC
GTGGGGAGGCCAGCAGCAGGGTTTCTGA
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