mRNA_H-elongata_contig20249.5736.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20249.5736.1
Unique NamemRNA_H-elongata_contig20249.5736.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: D8LLC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC8_ECTSI)

HSP 1 Score: 555 bits (1430), Expect = 1.190e-189
Identity = 346/593 (58.35%), Postives = 403/593 (67.96%), Query Frame = 1
Query:    4 GRKKKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPSVRPRDDRGQDKRDGDDQDVSGEGTRFAGKRNHINALGFPNDGYDYEQHIKSMVGGGTFVTKSGKVDHFAAG-SAGSRAGGAALTIPVEALPSEEVLDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAAGA-DDGEVGFDFDAHVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSD----LD--AESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEE-RAVLDSQFEATLAAYDSDEWGELEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRLPLEQRAITVETLVN----------------------GDAVGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEGIDDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGVLPERVPNERGMISLTAGKNFGEKRDAEETVEEKRQRKAKIK 1689
            GRKKKFIDKK+++TFHVVHRSQQDK  EGEE+AS+FVLIPS  PRD R QD+R    +   G+G     +R+HINALG PNDGYDY+QH+KSM GGGTFV+K+GKV HFA G S G+R GGA   IP EALPS E LDRQLEAVTISEKVMD DMR+ALA  L  V E+ + DE+N+LDDDFV+QAAGA +DG  GFDFDAHVARLM+ASA+ETGLR+R+ +DDL+ KGL RLR+     S    D    LD  A SD SGE D+ LLEGL++      GG  GV GEGTEE RAVLDSQFEATLAAYDSDEWGELEEDD+RV+G+WD EQ  YAN C+D+FLA  E+A W +G +RLP +QR+I   TL                        GDA                G  P   V      + SGPRLGKLRG G   +          ++D+E     L D+  HNEYLRE+  E WDCETIVSTYSNLDNHPSVLGTGRKAKP + R    +E  GG     DAS   V +V LS KTG+PLGVLPER  N+ GM+SL AGKN GEKRD EET EEKR+RKA+IK
Sbjct:    2 GRKKKFIDKKESTTFHVVHRSQQDKANEGEEEASEFVLIPSGPPRDSRPQDERKAAGKG-KGKGGVAGAERDHINALGLPNDGYDYDQHLKSM-GGGTFVSKTGKVQHFAEGNSQGARGGGAKPAIPEEALPSGETLDRQLEAVTISEKVMDGDMRRALAAGLADVGEEDWDDESNMLDDDFVVQAAGAGEDG--GFDFDAHVARLMEASAKETGLRQRSRDDDLQTKGLVRLRRDSDSESDDSEDDVATLDGGAGSDDSGEIDDALLEGLDISGAAAAGG--GVPGEGTEEDRAVLDSQFEATLAAYDSDEWGELEEDDDRVQGRWDLEQHDYANTCMDDFLAANEDARWTEGVQRLPPDQRSIAAATLAIEGXXXXXXXXXXXXXXXXXXSVGDAGRAGXXXXXXXXXXXXGVGP--SVEAAAKTATSGPRLGKLRGFGAVPVXXXXXXXXXGEEDDE-----LHDMEHHNEYLREKPAEQWDCETIVSTYSNLDNHPSVLGTGRKAKPGRARRSPVAEGVGG----GDAST--VQQVALSAKTGLPLGVLPERTYNDTGMVSLIAGKNKGEKRDTEETAEEKRRRKAQIK 575          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: A0A836CIF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF2_9STRA)

HSP 1 Score: 170 bits (431), Expect = 7.390e-42
Identity = 216/715 (30.21%), Postives = 283/715 (39.58%), Query Frame = 1
Query:   10 KKKFIDKKQASTFHVVHRSQQDKTK-EGEE-DASKFVLIPSVRPRDDRGQDKRDGD---DQDVSGEGTRFAGKRNHINALG----------------------FPNDG--YDYEQHIKSMVGGGTFVTKSGKVDHFAAGSA---GSRAGGAALTIPVEALPSEE-VLDRQLEAVTISEKVMDSDMRKALAGELYG-------------------------------VEEDSFVDENNLL--DDDFVIQAAG-ADDGEVGFDFDAHVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAAYDSDEWGE---------------LEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRLPLEQRAITVETLVNGDAVGNPSEGRGDETGTE-------------------AGKSPGEVVGVVGGLSASGPRLGKLRGLGREG------------------------------------LEDEEGDQVEEDDDEEGIDDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGVLPE----RVPNERGMISLTAGK---------NFGEKRDAEETVEEKRQRKAKIKEEKRV 1704
            KKKFI+  + +T+ +VHRSQ DK   EG+E DAS+FVL+P+   +  R   +R+G         G G R+   R HINA                         P+DG  YDYE H+K+M GGGTF+ K G+V     GS    G    G    +P E+LP+EE  + R L A+TIS+KVMD DM                                         VEE   ++       +DDFV+QAAG   D + GFDFDAH+ARL+ AS RE GLR R A+DD                 ++GSD        GE D+        E G   G D           A+L +QFEATLA YDSD WGE                             +    A+  +DEFL  + + NW  G  R     R   V  +  G+      +G                           A ++P            SGPRLG LRGL   G                                    L++EE +          ID+  D       Y ++   E WDCET++STYSNLDNHP+VL                         VA +       +VLS KTG+P+GVL +    R  +  G  S +            N GE R   ET EEK+ RKA+IKEE+R+
Sbjct:    3 KKKFIESGKGTTYRLVHRSQLDKAAAEGDEGDASEFVLVPAGEIKQRRIATRRNGGTNAQHGSGGGGARYTVAREHINAFXXXXXXXXXXXXXXXXXXXXXXXLPDDGTGYDYESHLKTM-GGGTFINKEGRV-----GSVPLPGDAREGRRAVLPAESLPAEEGEVARNLAAITISDKVMDDDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEFDELEXXXXXXXEDDFVLQAAGDGGDDDGGFDFDAHIARLIAASEREVGLRPRGADDD-----------------FSGSD--------GELDDPSEFSTPSESGSYSG-DAPTADAAA--AALLAAQFEATLAEYDSDTWGEGGXXXXXXXXXXXXXXXXXXXXXXXXXGAQIGALADAYMDEFLREQADLNWFAGLGR-----RTADVPRVWQGERATQGEDGSXXXXXXXXXXXXXXXXXXXXXXXXXXAAQAP---------CGLSGPRLGSLRGLNSRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRRLAALDEEEEEAYVP------IDETFD-------YFKKAPEERWDCETVLSTYSNLDNHPTVLSAAXXXXXXXXXXXXXXXX------VAASEPLHPAPIVLSRKTGLPVGVLNDARRQRAEHRDGGGSSSGDSDGDDGAPRVNRGEARARGETAEEKKARKARIKEERRL 650          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: A0A7S0XBI8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBI8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.280e-38
Identity = 174/553 (31.46%), Postives = 247/553 (44.67%), Query Frame = 1
Query:   10 KKKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPSVRPRDDRGQDKRDGDD--QDVSGEGTRFAGKRNHINALGFPNDGYDYEQHIKSMVGGGTFVTKSGKVDHFAAGSAGSRAGGAALTIPVEALPSEEVLDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAAGADDGEVGFDFDAHVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAAYDSDEWGELEEDDERVKGQWD-PEQQQYANRCLDEFLANKEEANWVDGFKRL-PLEQRAITVETLVNGDAVGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEGIDDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTG-RKAKPRKPR----GPLASENAGGVSSVADASI-------------SIVTKVVLSEKTGIPLGVLPERVPNERGMI 1602
            KK FI K +  T+HVVHRSQ D     EE  S +VLIP+    +D  +  +D      + S +  +F  K +HIN LGF NDGYDY +HIK +V GG F+  +G++          R     + IP + LPS E  DR LEA+ IS+K MD D+R AL  +  G E+  F +    LDDDFVIQ   A+     FDFDAH+ARL+  S ++ G     A                       +D D   D   E  E+L E   V + Q               +A++D QFE  L  Y+        E    V+G  D  E  +Y +  L+EF+ N++     DG  R  PLE+    +   V+ D   +  + + +   TEA K   E   ++  ++          G+  + + D   + VE          +L  +   NE         WDCETI++TYS LDNHPSV+     K KP K R      LA+EN        +  +             +I TK++LS KT +P+G  P    N+   I
Sbjct:    3 KKPFIKKSEGQTYHVVHRSQTDSAYANEEKPSDYVLIPAQLSNNDNRRKFKDNQSVYSNNSIDFKQFTRKGDHINHLGFKNDGYDYSKHIK-VVDGGKFIGLNGELLE--------RPVVKEIEIPEDLLPSAEEFDRNLEAIVISDKYMDDDIRNAL--DFDGDEDGEFEE----LDDDFVIQVM-AEPEVPDFDFDAHIARLIANSEKDLGYVPARAH-------------------VTDTDDDDFLDEDEESIESLHENKKVSDIQ---------------QAIIDEQFEKMLEEYEXXXXXXXXE----VEGMIDINENAEYLDEALNEFIENQKLEKEYDGLVRQHPLERLNRQIINKVHEDQNIDIKQLQKNSI-TEAEKQQNEASMIISEVN---------EGISNQAVADP-WETVE----------YLKTVKTKNE---------WDCETILTTYSTLDNHPSVIKDEFSKFKPHKSRYVVANELANENRQKTLDKTEKLLCNEKKYNIIPNHNTITTKILLSNKTMLPIGFGPHEKNNKSTSI 471          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: A0A6A4EL32_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EL32_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.380e-38
Identity = 181/595 (30.42%), Postives = 252/595 (42.35%), Query Frame = 1
Query:    7 RKKKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPSVRP-------------RDDRGQDKRDGDDQ-----------------DVSGEGT------RFAG--KRNHINALGFPNDGYDYEQHIKSMVGGGTFVTKSGKVDHFAAGSAGSRAGGAALTIPVEALPSEEVLDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAA--GADD-GEVGFDFDAHVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAA-YDSDEWGELEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRLPLEQRAITVETLVNGDAVGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEGIDDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGVLPERVPNERGMISLTAGKNFGEKRDAEETVEEK 1665
            RKK+FIDKK A  FHVVHRSQ+D  K  + +ASK+VL+ S +               DD G  + D DD+                   SG         RF G    + ++  G P DGYDY QH+K M G G F + + + D      A SR     + +P +ALPS E  DR L+A+T++  VMD D+R+AL      V +++F +    LDD+FV+QAA   ADD G   FD+DAH+A+LM+A++  T L                         Y G+  D+E       DE   +                  +  EE+ VLD  FE TLA  YD D+ GELEEDD   +G+              E L  +  A  V+ +  +  E  A     L N    GN  +   +E   E                             +E                      L ++   N+YL+  + E WDCETIVSTYS LDNHP+VL      + +K + P+       ++S+A+       KV LS KTG+PLGV       +      T  +    +R   ET E+K
Sbjct:    3 RKKQFIDKKSAQHFHVVHRSQRD-PKANDPEASKYVLLSSSQHVELRSDSESDDEYEDDGGDSELDSDDEMPDLVDTKSTKPKKKSSSSSGRAAFPVRKVRFGGVEAEDLVDENGLPRDGYDYSQHMKEM-GQGKFYSATSRFDAGEEARALSRK----VDLPEDALPSAEEQDRLLDAITLTTDVMDEDLREAL------VNDEAFEE----LDDNFVVQAAEQNADDAGTDDFDYDAHIAKLMEAASGVTPL-------------------------YRGNLTDSE-------DEEFSDDXXXXXXXXXXXXXXXTPDRDEEQRVLDELFEKTLAEEYDDDQLGELEEDDPETRGK--------------ETLDGELLAAVVEDYAFVQQEL-ADAEGKLGNALRAGNRLKQVLEECEAERHAYXXXXXXXXXXXXXXXXXXXXXXXXKKE----------------------LQELFERNQYLQREEREQWDCETIVSTYSTLDNHPTVLREEGPTRRKKKKQPV-------IASIAEGVDIRKQKVTLSRKTGMPLGVFETEAAVKSKPAKHTEQQPETSRRQKGETKEQK 505          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: H3GXQ9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXQ9_PHYRM)

HSP 1 Score: 156 bits (395), Expect = 1.290e-37
Identity = 171/565 (30.27%), Postives = 248/565 (43.89%), Query Frame = 1
Query:    7 RKKKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPSVRPRDDRGQDKRDGDDQDVSGEG------------------------TRFAG--KRNHINALGFPNDGYDYEQHIKSMVGGGTFVTKSGKVDHFAAGSAGSRAGGAALTIPVEALPSEEVLDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAA---GADDGEVGFDFDAHVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAA-YDSDEWGELEEDDERVKGQWDPEQQQYANRCLD-EFLANKEEANWVDGFKRLPLEQRAITVETLVNGDA-VGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEG-------IDDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGVLPERVP 1584
            RKK+FI+KK A  FHVVHRSQ+D  K  + +ASK+VL+ S +  + R   + D D                                 RF G    + ++  G P DGYDY QH+K M G G F + + + D      A SR     + +P +ALPS E  DR L+A+T++  VMD D+R+AL      V +++F +    LDD+FV+QAA     D G   FD+DAH+A+LM+A++  T L                         Y G+  D+E +   +            E      D+ +  +  E +  LD  FE TLA  YD ++ GELEEDD   +G+            LD E LA               +E  A   + L + +  +GNP             +    +  V+   +A            R   E +E  + E++    G           L+++   N+YL+    E WDCETIVSTYS LDNHP+VL      + +K + PL       ++S+A+       KV LS KTG+PLGV     P
Sbjct:   21 RKKQFINKKTAQHFHVVHRSQRD-PKANDPEASKYVLLSSSQHVELRSDSESDDDXXXXXXXXXXXXXLVDAPSAPKKSKAAFPVRKVRFGGVEAEDLVDENGLPRDGYDYTQHMKEM-GQGKFYSATSRFDAGEEARALSRK----VDLPEDALPSVEEQDRLLDAITLTTDVMDVDLREAL------VNDEAFEE----LDDNFVVQAAEDNAEDAGTDDFDYDAHIAKLMEAASGVTPL-------------------------YRGNITDSEDEEFSDEXXXXXXXXXXHE------DLELPEDRDEAQRALDELFEKTLAEEYDDEQLGELEEDDPETRGK----------ETLDGELLA-------------AVVEDYAFVQQELADAEGKLGNPL------------REGNNLKQVLDECAAE-----------RFAYEYDEDAETEDEXXXXGPVERAERXXXXLEELFERNQYLQREDREQWDCETIVSTYSTLDNHPTVLREEGPTRRKKKKQPL-------IASIAEGEDIRKQKVTLSRKTGMPLGVFESAAP 485          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: A0A3F2RYW0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYW0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.460e-37
Identity = 186/611 (30.44%), Postives = 279/611 (45.66%), Query Frame = 1
Query:    1 QGRKKKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPS------VRPRDDRGQDKRDGDDQ----------------DVSGEG--------TRFAG--KRNHINALGFPNDGYDYEQHIKSMVGGGTFVTKSGKVDHFAAGSAGSRAGGAALTIPVEALPSEEVLDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAAGADDGEVG---FDFDAHVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAA-YDSDEWGELEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRLPLEQRAITVETLVNGDA-VGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEGI-------DDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGVLPERVPNERGMISLTAGKNFGEK-RDAEETVEEKRQRKAKIKEEK 1698
            QGRKK+FI+KK A  +HVVHRSQ+D  +  + +ASK+VL+ S      +R   +    + D DD+                  +G+G         RF      + ++  G P DGYDY QH+K M G G F + + + D     S  SRA    + +P +ALPS E  +R L+A+T++  VMD D+R+AL      V   +F +    LDD+FV+QAA  ++ E     FD+DAH+A+LM+A+                  G+ + R         G+  D+E +   EF +         +G+     V    E  E + VLD  FE TLA  YD ++ GELEEDD   +G+            LD  L                +E  AI  + L + +  +GNP             ++   +  V+    A            R   E++E    EED+ EE         +  + ++   N+YL+  + E WDCETIVSTYS LDNHP+VL   R+  P++ +     + A  V++     +    KV LS KTG+PLGV              TA    GE+ +  +E V++ R++K + KEEK
Sbjct:  341 QGRKKQFINKKTAQHYHVVHRSQRD-PRANDPEASKYVLLSSTQQDVELRSDSEYEDSELDSDDEMPDLVDTPAPKAKTSLKPTGKGKIAFPTRKVRFGSVEAEDLVDENGLPRDGYDYAQHMKEM-GHGKFYSATSRFD----ASEESRAMSRHVELPEDALPSGEEQERLLDAITLTTDVMDEDLREAL------VNGGAFEE----LDDNFVLQAAEENEAEGATDDFDYDAHIAKLMEAA-----------------NGVPKFR---------GNLTDSEDEE--EFSDXXXXXXEFSDGE-----VETPQERDEAQRVLDELFEKTLAEEYDDEQLGELEEDDPETRGE----------ETLDGALLEA------------VIEDYAIVQQELADAEGKLGNPL------------RTGNRLQQVLEECEAE-----------RRAYEEDEDATTEEDEVEEDPVARAKREEKEIQELYERNKYLQREEREQWDCETIVSTYSTLDNHPTVL---REEAPKRKK----KKQAVAVTAAVTEGVR-TQKVTLSRKTGMPLGVFE------------TAASTKGEEPKTYKEGVQDNRRQKGETKEEK 837          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: A0A5D6YF69_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YF69_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.010e-36
Identity = 175/561 (31.19%), Postives = 248/561 (44.21%), Query Frame = 1
Query:    4 GRKKKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPS-----VRPRDDRGQDKRDGDDQDVSGE--------GTRFAGKRNH--------------------INALGFPNDGYDYEQHIKSMVGGGTFVTKSGKVDHFAAGSAGSRAGGAALTIPVEALPSEEVLDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAAGAD-----DGEVGFDFDAHVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAA-YDSDEWGELEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRLPLEQRAITVETLVNGDAVGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEGIDDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKP-RKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGV 1566
            G+KK+FI+KK A  FHVVHRSQ+D     + DASK+VL+ S     +  R D   D  D   + +S           T+ A K N                     ++  G   DGYDY QH+K M G G F +  G+   F+  S  +R     + +P + LPS E  DR L+A+T++  VMD D+R+AL      V  ++F +    +DDDF+ QAA AD     D + GFD+DAH+A+LM+A++     R    +D                      D   ++                                 EE+ VLD  FE TLA  YD ++ GELE+DD   +G+   E      + LDE + +                  ++ +E L +   VGNP           +G    E++        +   L        EG E+ E D + EDDD + ++  L  +   N YL  R  E WDCE+IVSTYSNLDNHP+VL   R+  P RK +   A   A    ++  A     + VVLS KTG+PLGV
Sbjct:    2 GKKKQFINKKTAQHFHVVHRSQRDPLA-NDPDASKYVLLSSKNQVEIEFRSDNEDDSDDEMPELISSPRTAAAPTAATKRAAKANAGASAFPVRRVRFGDYEAEDLVDENGMVRDGYDYTQHMKEM-GKGKFYSADGQ---FSPQSELARR----VELPADVLPSAEEQDRLLDAITLTTDVMDDDLREAL------VNAEAFEE----MDDDFMAQAAQADPENRADAD-GFDYDAHIAKLMEAASGVPKFRGNLTDDXXXXXXXXXXXXXXXXXXXXXVDPATKA---------------------------------EEQRVLDELFEKTLAEEYDDEQLGELEDDDPATRGELVLE-----GKLLDEIVED----------------YVSVQLEMLADEGKVGNP---------LRSGNRLKEILEECEREREAAEAL--------EGEEEGEEDTMPEDDDVD-LEQALSALYTRNAYLTARVEEEWDCESIVSTYSNLDNHPTVL---REENPQRKKKKARAGAAAMDTEALEAAVAGKRSTVVLSRKTGMPLGV 467          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: A0A024TFD3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TFD3_9STRA)

HSP 1 Score: 148 bits (373), Expect = 7.120e-35
Identity = 169/542 (31.18%), Postives = 240/542 (44.28%), Query Frame = 1
Query:   13 KKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPSVRPRDDRGQ-DKRDGDDQDV----------SGEGTRFAG--KRNHINALGFPNDGYDYEQHIKSMVGGGTFVTKSGKVDHFAAGSAGSRAGGAALTIPVEALPSEEVLDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAA--------GADDGEVGFDFDAHVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAA-YDSDEWGELEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRLPLEQRAITVETLVNGDAVGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEGIDDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGVLP 1572
            K FI+KK+A  FHVVHRSQ+D      E ASKFVL+ S      R + D  D DD D+          SG+  RF     R+ +N LG  NDGYDY +H+K M G G F +  G  D   AG    R     + +P E + S    DR L+A+T++E VMD D+R+AL      V +++F +    L DDF++QAA        GAD    GFD+DAH+A+LM A+      R   ++D+              G  Y  +D + E D           G + ++ Q                  LD  FE  +A  YD ++ GELEED+ R K   + +     ++ +D+++  ++E    +G    PL       E L               E   E   S   V+     + A                       VE+  D       L D+   N YL +R  + WDCETIVSTYSNLDNHP+V+    KA  +K +             +A++S      +VLS KTG+PL ++P
Sbjct:    6 KSFINKKEAQHFHVVHRSQRDPLINDPE-ASKFVLLSSKPLPSGRNELDAYDSDDSDLPDLVPQVAAPSGKTVRFGNVVARDLVNELGMVNDGYDYSKHMKEM-GQGHFYSAGGTYDE-GAGLLNKR-----VVLPDEVMASANEHDRMLDAITLTEDVMDEDLREAL------VNDEAFEE----LTDDFMLQAAQELPDDADGADVAADGFDYDAHIAKLMAAAEGIPKYRGHISDDEDXXXXXXXE-----GCEY--TDEEHEDD-----------GQDKDDAQ----------------RALDDAFEKLMAEEYDDEQVGELEEDETRGKLVLEGD---LLDQIVDDYVNIRQELMADEGRLGNPLRSGNRLKEILA--------------ECAVELADSDDVVMKPTDPVPA-----------------------VEQPAD-------LSDLSS-NPYLVQRIDDQWDCETIVSTYSNLDNHPTVIREPSKAPKKKTK----------AQKIAESST-----IVLSSKTGMPLNIVP 432          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: A0A067C671_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C671_SAPPC)

HSP 1 Score: 144 bits (364), Expect = 9.550e-34
Identity = 173/584 (29.62%), Postives = 251/584 (42.98%), Query Frame = 1
Query:    4 GRKKKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPSVRPRDDRGQ----DKRDGDDQDVSG-------EGTRFAG--KRNHINALGFPNDGYDYEQHIKSMVGGGTFVTKSGKVDHFAAGSAGSRAGGAALTIPVEALPSEEV-LDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAA---GADDGEV-GFDFDAHVARLMDAS----ARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAA-YDSDEWGELEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRLPLEQRAITVETLVNGDAVGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEGIDDFLDDIGRHNEYLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGVLP---ERVPNERGMISLTAGKNFGEKRDAEETVEEKRQRK 1677
            G+KK FI+KK+A  FHVVHRSQ+D     +  ASKFVL+ + + ++  G     D  D DD D+         +  RF     ++ +N LG  NDGYDY +H++  +G G F +  G  D   AG    R     + +P + L S  V  +R LEA+T++E VMD D+R+AL  E      D+F +    L+DDF++QAA   G DDG   GFD++AH+A+LM A+         L +   +D+L               +Y  S  DA+                                       LD  FE  +   YD +E GEL+E++ R                L+  L      ++V       L++  +  E       +GNP                            +G RL ++  L     ED   +  EE + E      +DDI   N YL  R  + WDCETIVSTYSNLDNHP++L   R+  P+K +     +NA                ++LS KTG+PL + P   E        +S          R+ +ET EEK++RK
Sbjct:    2 GKKKAFINKKEAQHFHVVHRSQRDPLI-NDPTASKFVLLSATQAQEFDGSQAPYDSGDDDDDDMPDLVASAPTKQVRFGNVVAQDLVNELGMVNDGYDYTKHMRE-IGHGQFYSAGGTYDE-GAGLLSKR-----VVLPDDVLASNTVESERMLEAITLTEDVMDEDLREALTNE------DAFEE----LNDDFMLQAAEDNGEDDGAADGFDYEAHIAKLMAAADGIPKYRGNLSDDEDDDELXXXXXXXXXXXXXXXAYGESKDDAQR-------------------------------------ALDEAFEKLMEEEYDDEEIGELDEEETR------------GELLLEGALLESIVQDYVH------LQEEVMQTE-----GRIGNPLR--------------------------TGNRLQEV--LAECAAEDALYESEEEAEPELAN---MDDIAHTNPYLAPRVEDQWDCETIVSTYSNLDNHPTLLREPRRENPKKKK-----KNA--------------NHIILSSKTGMPLNITPISEEAESQHDDAVSYVGSVVPQLVRNRQETKEEKKERK 457          
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Match: A0A7S2R514_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R514_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.150e-33
Identity = 177/619 (28.59%), Postives = 281/619 (45.40%), Query Frame = 1
Query:    7 RKKKFIDKKQASTFHVVHRSQQD-------KTKEGEEDASKFVLIPSVRP----RDDRGQDKRDGDDQDVSGEGTRFAGK-RNHINALGFPNDGYDYEQHIKSMVGGGTFVT-KSGKVDHFAA-GSAGSRAGGAALTIPVEALPSEEV--LDRQLEAVTISEKVMDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQA----------AGADDGEVGFDFDAHVARLMDASARETG----LRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAESDRSGEFDETLLEGLNVEEGQGGGGDVGVLGE--GTEERAVLDSQFEATLAAYDSDEWGELEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRLPLEQRAITVETLVNGDAVGNPSEGRGDETGTEAGKSPGEVVGVVGGLSASGPRLGKLRGLGREGLEDEEGDQVEEDDDEEGIDDFLDDIGRHNE--------------------YLRERQPELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVADASISIVTKVVLSEKTGIPLGVLPERVPNERGMISLTAGKNFGEKRDAEETVEEKRQRKAKIKEEKRVS 1707
            +KK FIDKK AST+H+V RSQ+D        T E  +  S F+L+P+                           T    K ++ ++  G  ++ Y+Y++H+K + G G + +  SGK+D  AA G A       A T+P+    ++E+  LDR L+++ +S+  MDSDM +AL G+    +E SF +    + DDF I A          +G  D   GFDFDAH+  L++ ++++ G       R + DD    G   L K G G  +   DL  E +   E D    E  NVE+        GV+ +    EERA+++ +FE  LA YDSDE G+L+ + + + G    E  +      D+FL  K +  +++G   LP  +R                                   VG  G  +  G R+   +GL     +DEE D++E       ++ F D +   ++                    Y  +R    WDCE+I+STYSN DN+P+V+G  RK K  KP+         GV  + +   +   ++ LS KTG+P+  +P    ++  + S+    N G+ R   E+ EEK+ RK  +K+EK ++
Sbjct:    3 KKKPFIDKKNASTYHIVRRSQRDVGGYYDDSTGELNDLPSDFLLMPTPETVKXXXXXXXXXXXXXXXXXXXXXPTVLLNKMKSKLDQAGLLDEDYNYDRHMKPITGSGVYFSGDSGKLDTRAALGDA------RASTVPL----NDEIRELDRNLDSIALSQDCMDSDMAQALFGDF---DEGSFEE----ILDDFCITADEEPQHDDNESGDGDDNNGFDFDAHIQDLLNKASKQEGGGSMKTNRQSNDDF-FSGQKALHKHGHGKLH---DLVEEDE---EEDSLNREFNNVED------TAGVVPKLCPDEERALVE-KFEMALAEYDSDELGDLDNECQEIGGVRPLEGDKQLEAVFDDFLTEKRDEIFIEGTSHLPENKR-----------------------------------VGGSGFAALVGKRMIPSKGLKNTEDQDEE-DKIE-------VEKFQDVLAEADQILANPEMDLPPEEVFIDGKSYFTQRTVNPWDCESILSTYSNCDNNPAVIGRNRKKKSSKPKET-------GVEGIPEDQPA---QIRLSNKTGLPINTMPTAYTDDDTLASV----NRGQARRRGESKEEKKARKQGVKQEKLIA 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20249.5736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC8_ECTSI1.190e-18958.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CIF2_9STRA7.390e-4230.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0XBI8_9STRA2.280e-3831.46Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6A4EL32_9STRA3.380e-3830.42Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
H3GXQ9_PHYRM1.290e-3730.27Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3F2RYW0_9STRA2.460e-3730.44Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A5D6YF69_9STRA1.010e-3631.19Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024TFD3_9STRA7.120e-3531.18Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A067C671_SAPPC9.550e-3429.62Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A7S2R514_9STRA2.150e-3328.59Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20249contigH-elongata_contig20249:1282..6329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score566.2
Seed ortholog evalue1.7e-158
Seed eggNOG ortholog2880.D8LLC8
Preferred nameLTV1
KEGG koko:K14798,ko:K14811
GOsGO:0000054,GO:0000056,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009987,GO:0010008,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0022402,GO:0022613,GO:0022626,GO:0022627,GO:0030684,GO:0030688,GO:0031090,GO:0031410,GO:0031503,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032535,GO:0032991,GO:0033036,GO:0033750,GO:0034448,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0042023,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044786,GO:0045184,GO:0045793,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090066,GO:0090304,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901360,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal small subunit export from nucleus
EggNOG OGsKOG2637@1,KOG2637@2759
EC3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLow temperature viability protein
Ec32 orthologEc-27_002150.1
Exons9
Model size1719
Cds size1719
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.7321217-CDS-H-elongata_contig20249:1281..14101622930138.7321217-CDS-H-elongata_contig20249:1281..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 1282..1410 +
1691679295.7709289-CDS-H-elongata_contig20249:1281..14101691679295.7709289-CDS-H-elongata_contig20249:1281..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 1282..1410 +
1622930138.7502918-CDS-H-elongata_contig20249:2517..26711622930138.7502918-CDS-H-elongata_contig20249:2517..2671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 2518..2671 +
1691679295.781149-CDS-H-elongata_contig20249:2517..26711691679295.781149-CDS-H-elongata_contig20249:2517..2671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 2518..2671 +
1622930138.7667592-CDS-H-elongata_contig20249:2829..29911622930138.7667592-CDS-H-elongata_contig20249:2829..2991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 2830..2991 +
1691679295.7892957-CDS-H-elongata_contig20249:2829..29911691679295.7892957-CDS-H-elongata_contig20249:2829..2991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 2830..2991 +
1622930138.7813115-CDS-H-elongata_contig20249:3344..34721622930138.7813115-CDS-H-elongata_contig20249:3344..3472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 3345..3472 +
1691679295.8033397-CDS-H-elongata_contig20249:3344..34721691679295.8033397-CDS-H-elongata_contig20249:3344..3472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 3345..3472 +
1622930138.799645-CDS-H-elongata_contig20249:3738..40501622930138.799645-CDS-H-elongata_contig20249:3738..4050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 3739..4050 +
1691679295.812427-CDS-H-elongata_contig20249:3738..40501691679295.812427-CDS-H-elongata_contig20249:3738..4050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 3739..4050 +
1622930138.8138201-CDS-H-elongata_contig20249:4313..43841622930138.8138201-CDS-H-elongata_contig20249:4313..4384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 4314..4384 +
1691679295.821558-CDS-H-elongata_contig20249:4313..43841691679295.821558-CDS-H-elongata_contig20249:4313..4384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 4314..4384 +
1622930138.827241-CDS-H-elongata_contig20249:4648..50421622930138.827241-CDS-H-elongata_contig20249:4648..5042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 4649..5042 +
1691679295.8305645-CDS-H-elongata_contig20249:4648..50421691679295.8305645-CDS-H-elongata_contig20249:4648..5042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 4649..5042 +
1622930138.8429046-CDS-H-elongata_contig20249:5678..59201622930138.8429046-CDS-H-elongata_contig20249:5678..5920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 5679..5920 +
1691679295.8495536-CDS-H-elongata_contig20249:5678..59201691679295.8495536-CDS-H-elongata_contig20249:5678..5920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 5679..5920 +
1622930138.924126-CDS-H-elongata_contig20249:6202..63291622930138.924126-CDS-H-elongata_contig20249:6202..6329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 6203..6329 +
1691679295.8655121-CDS-H-elongata_contig20249:6202..63291691679295.8655121-CDS-H-elongata_contig20249:6202..6329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20249 6203..6329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20249.5736.1prot_H-elongata_contig20249.5736.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20249 1282..6329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20249.5736.1

>prot_H-elongata_contig20249.5736.1 ID=prot_H-elongata_contig20249.5736.1|Name=mRNA_H-elongata_contig20249.5736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=573bp
QGRKKKFIDKKQASTFHVVHRSQQDKTKEGEEDASKFVLIPSVRPRDDRG
QDKRDGDDQDVSGEGTRFAGKRNHINALGFPNDGYDYEQHIKSMVGGGTF
VTKSGKVDHFAAGSAGSRAGGAALTIPVEALPSEEVLDRQLEAVTISEKV
MDSDMRKALAGELYGVEEDSFVDENNLLDDDFVIQAAGADDGEVGFDFDA
HVARLMDASARETGLRERTAEDDLEMKGLARLRKGGGGSSYAGSDLDAES
DRSGEFDETLLEGLNVEEGQGGGGDVGVLGEGTEERAVLDSQFEATLAAY
DSDEWGELEEDDERVKGQWDPEQQQYANRCLDEFLANKEEANWVDGFKRL
PLEQRAITVETLVNGDAVGNPSEGRGDETGTEAGKSPGEVVGVVGGLSAS
GPRLGKLRGLGREGLEDEEGDQVEEDDDEEGIDDFLDDIGRHNEYLRERQ
PELWDCETIVSTYSNLDNHPSVLGTGRKAKPRKPRGPLASENAGGVSSVA
DASISIVTKVVLSEKTGIPLGVLPERVPNERGMISLTAGKNFGEKRDAEE
TVEEKRQRKAKIKEEKRVSPKR*
back to top

mRNA from alignment at H-elongata_contig20249:1282..6329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20249.5736.1 ID=mRNA_H-elongata_contig20249.5736.1|Name=mRNA_H-elongata_contig20249.5736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5048bp|location=Sequence derived from alignment at H-elongata_contig20249:1282..6329+ (Himanthalia elongata Himel1 dioecious)
CAGGGGCGAAAGAAGAAGTTCATCGACAAGAAGCAGGCTTCGACGTTCCA CGTCGTACATCGTTCGCAGCAGGATAAAACGAAAGAGGGCGAAGAAGACG CCTCCAAGTTCGTCCTCATCCCTTCAGTGGTGGGCCCACGGTTGATCTTC AACAGCTCTCATATCTTCTCTCTTTACGCAGTATCGACATGTCTCTCGCC CGAAGTTTCATTCACACTCGTAGAGCATTGATCGTTCACGTACATCTGGT GAAGGTGTCAGGGAAAAGGTTTACCGCTGGTCCAAAAGGGAACAGGGGCA CTAAAATATTATCATATTATCACGCCCGTTTTCCCAACCATTCCTTTGTA AGCCTCATCTCTTTAGGGTACAGTACGTCTTAACGAAAAAAAAAATGATT TTGATTGTTGTTGTTGTTGTTGTTGTTGTTGGTCGCACTTTTAGCCCCTG TCCCCGTTCGCGCCTGAAAATTTGGTCTCGCGAGACGAGTTTAGTACTCC CGTCCCGCGTCAATTGATAATTGATAATTGATTTTGATTGTGACTGTTCG CATACTCAAAATCAATAATCAATCACCCGCCATTCCCATCGACCGAACAA AACAGTGGGAAATTGATTTTGATTTTGGTCACTCCCCCAATACCTCCTTC AAATACCTCTCTTTCTGTGATGAATTTGTGCCTCGTCTGCCAGTGGCATG TAGTAGCCAGGTGCCGAACAGCCAATCGTTTTCCGATTTGCAAAATCAAG TGCCGGTTCGCCAGATGTTCAAGAAAAATTAATCATTTTTGAATTAATTT TCTTGAGCTTGATTTCGAGGAATTGTGCAGCTGAATGATTCAAATACCTC CACCAACCAGAGGAATAAAAATAATAAAATTGAAAAGTTCAAGCGGTAAC AATCATAATCAAACTCATTTTTTTTCTTCGTTAAGACGTACCCTTACAAA GGAAGCGAGGAAATTCGTACACGTAGACCAGGCCGGTGATTTGATTTGGC CTCGTGTCGATGTTATGACAAAATTAGTAAAACTACCCTTATAGGTAGAT CCCACCTGTATTCTGACTCCTACGCCCGAGTCGGCGAGGTTTGTGAACAT CGCGAGATGGATGTCAATGCGCTCCACACTCCAAATAGATTTGGAGTGCC ACGAGACACTATGGACGTGTGAGCTTCGATTCGCCCTTGTCTCCATTATA ACATCAACACGGTTGTCTCTTTGCGATGCCTGGCAGCGGCCTCGAGACGA CCGAGGCCAAGACAAGAGGGATGGAGATGATCAGGATGTCTCCGGCGAAG GAACAAGATTTGCGGGGAAGAGAAATCACATAAACGCCTTGGGTTTCCCG AACGACGGATACGACTACGAGCAGCACATCAAGTCCATGGGTGAGGCAGA CAGAGTGGGAAATGATAGGGGGGCGGTGCGATAGGTTTTATCTCCAGATG GACACGTGATTGCAATGAATAACTTATATGGGTTCTCTTCTCTTTATAAT TAACGATGCGTCACCTCCCGATGTCATACCATGCCCCGTGGGTCCGAGTA GGTGGTGGAACTTTTGTGACTAAGAGCGGAAAGGTGGATCACTTTGCAGC GGGAAGCGCCGGCTCCAGAGCGGGGGGGGCGGCGTTGACTATCCCCGTGG AGGCGTTGCCTTCCGAAGAGGTGCTGGACCGACAGCTGGAGGCAGTCACC ATTAGCGAAAGTGAGCGCGATGATGTCATGACCTAACCACCGCAATCGCG CGAGGAACGAAAGCTTGTTGAAACCGATACAACGCCTTCCCCGGGACGTT GCAGGCGAGGGGCATTTTTGTGGCTCGTGGTTTGAGCAGTGTGCTGCCAT GTGTTGGGTGACATGCAAATGCTGCGAGCAAAGAAATGGTGTGTTCAGGT TTGAGAGGTATTGTTGCAATAAGCTTACCGGGCTCGTCTGCCGTGGGGAA AGGGTTCCCGATGCTGCCGCCGGCTTACTCTGGAGAAAATAAGTCTGAGG TTGTAGGACAAGACAGATCGTCATAAGATTTGTCCAACCGGATGTGTATT TTGCTGTTTGCAGAGGTGATGGACTCTGATATGAGGAAGGCTCTCGCCGG CGAGCTGTACGGCGTAGAAGAAGATTCATTCGTAGATGAGAACAACCTGC TGGACGACGACTTCGTTATTCAGGCGGCAGGGGCAGACGACGTGAGAATC GGACAAAGGGCCTAAAACAATTCAACACTGATTCGTGCACAATTTCGGGG TCAAGGGCAGAGTGAGCTCCTACCTCTTACGATCGACGTTTCGCAAGAAG TGGGTTGCGCATTTTTTCCCCCTGGCGAGAAAAGCTTACACGCACATATC CGGGTCTCGGGAGGGGTCTGGCTGAAATAGATACGTCTCGCTCAAACCGC TGTCATAACGGGTGAGACCTCCTTTCCGCCGCCGCGCCCTTCTGAATGCT GGCGTAGGGTGAGGTCGGCTTCGATTTCGACGCACACGTCGCCAGGCTGA TGGACGCCAGCGCAAGGGAGACGGGCCTCCGAGAGAGAACGGCGGAAGAC GACCTAGAGATGAAGGGTCTGGCGCGCTTGCGGAAAGGCGGGGGCGGGAG TTCCTACGCGGGCAGCGATCTCGACGCGGAATCGGATAGAAGTGGAGAGT TCGACGAGACATTGTTGGAGGGATTGAATGTCGAAGAGGGCCAAGGGGGT GGAGGGGATGTTGGCGTTCTTGGTGAGGGGACGGAGGAGCGAGCGGTGCT GGATTCTCAATTTGAAGCGGTGAGACAGACATCCATTGCGGGGAAATGTT GCAGCGGTCGCCTTGCGTATTCCACCCGCTCTTTCTTGTTTATCTCCCAT TTTTCCTCCCCTACATTTCATTTGGCATGAACGTCGAGGCAACCCGCAGT GACCCTGTGGTATTCCCTATTCTAAACGATTTCTCCTCCCGCTGCTGCAT GAGCCCCACGATTCCATATCCGCTTACTATCCTCTCCATGTGGTACGTCC TCCTCGGGTCGATTTGTGGGTCCTTGATTCAGACCCTGGCGGCATACGAC AGCGACGAATGGGGAGAGCTGGAGGAAGACGACGAACGCGTCAAGGGTCA ATGGTGAGTTCTCCCGCAACCGTCCCGTGGGGCGAACCATAGTGGGGTCG CGCCGCTTCCCTACCTCCTTAGCACCGCACTTACAGGCTCCCGGGTGAAA TAGGTTTCGTGGAAAACAAGCATCGTCAAATGGGAGTGTCGTGTATTTTA TCAAGAAAATTCCCCGTACTCTTTTCGCAAGTTTCCTCTGACGAAAGCGC TGAGCCGCGACGCCATCGCTTTCTTTCACTAAACTACAATGTGCGGTACT CGCACGAAACCTCCCAGGGATCCCGAGCAACAGCAGTACGCGAACAGGTG CCTAGACGAGTTCCTCGCCAATAAGGAAGAGGCCAACTGGGTGGATGGGT TTAAGCGCCTGCCCCTGGAGCAACGCGCGATCACGGTCGAGACTCTCGTG AACGGAGATGCTGTTGGAAACCCCAGTGAAGGCCGCGGAGACGAGACGGG AACAGAGGCGGGTAAATCCCCTGGTGAAGTTGTTGGGGTCGTTGGGGGGT TGTCTGCGTCCGGACCGCGGTTGGGCAAGTTACGAGGTCTGGGGCGGGAG GGCTTGGAGGACGAAGAGGGAGATCAAGTCGAGGAGGATGATGACGAAGA GGGGATAGACGACTTTCTCGATGACATCGGACGGCACAATGAGTACCTAC GGGAAAGACAGGTAGACGCGACCGATCGCCGTGCTTCGTTCCCTCAAGTA TTGGCTTGACTTGTGTTTGTATTTCCATGTTAGGTTGTGCGATCATAGCC AGCGACTATAGTTACCATGGTTGGACATCCTGATTGTCGTTTAATGGGTA GGCATCCCAGCTTGTGGGTCTTTTGTTTTCCGAGTCCATCCCATCTGGCG ACAACTAATCGATAGCTTCAAAAATACGGAGACCTATCGGAGGACAGTTG GCGCATTTACCCCGTCCCCGATAACAAACGCTGTGCGTACGAGGCACTGA AACAACTATCGCTTTTGTCGAGGAGAAAGACTGTAACCAAATGGCGCATC TCTTCCCCAGAGCCTTCGAGCGCCGCCGGGAATTCGGATCCTCATTTCCT ATAAGCAATACAGAAGCGGCATTCCGCGCGTGGAGCGCCTCGCCGTGTGC CTAACTTGTCGATAGATGATACCTTATACTTGAGACCTTCGACTGGACGA ATAGAAGTTGATGCCCCTCCAAATTATGCAAACGATCTTGGTAAACAGCA AAGCGCGTTGCTGCGAGGTAACGCCCCGTCTGAGAATTAATTAAACTCCC TCGTCCCGTCCCTCCCTCTTGGGATGAAAACCTTCACGTCTCACAAGCCG GAACTGTGGGACTGTGAGACCATTGTCAGCACCTACTCGAACCTCGATAA TCATCCCTCCGTGCTCGGGACTGGCCGTAAGGCCAAGCCGCGAAAGCCTC GAGGCCCTCTAGCCTCTGAGAACGCCGGGGGCGTCTCGAGCGTGGCAGAC GCATCAATATCGATAGTGACAAAGGTGGTCTTGTCAGAAAAGACCGGAAT ACCCCTGGGCGTACTCCCGGAGAGGGTGCCGAACGAAAGGTGAGTGAATG CGCTCGTCGTCCGTTGTTCCCTCGCGCAAATCGTCGAAGGTGTTTCTTTG TCCGAGTGCGGTGTCAGATGGAGTGATTGGGGTTGACGTCGAGGGAGACG AAATCTATATATTTTGGGTTGTCGCTATCGCGTGTGATGTATCGCATTCG ACCCAGCTACGGTGGTGGTCCATCGACCCAATTCTCTGCGCGACGCACGT CGACTCGCCGTTTGGTTCTCGCGAAAATACCCGCCCGCTTCTCCTGTTCG TCGCGCCATTGGTGTACCCAGGGGCATGATATCGTTGACCGCGGGAAAAA ACTTCGGTGAAAAGCGCGACGCGGAAGAAACCGTGGAGGAAAAGCGTCAG AGAAAAGCCAAGATAAAGGAAGAGAAGCGGGTAAGTCCTAAACGTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20249:1282..6329+

>mRNA_H-elongata_contig20249.5736.1 ID=mRNA_H-elongata_contig20249.5736.1|Name=mRNA_H-elongata_contig20249.5736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3438bp|location=Sequence derived from alignment at H-elongata_contig20249:1282..6329+ (Himanthalia elongata Himel1 dioecious)
CAGGGGCGAAAGAAGAAGTTCATCGACAAGAAGCAGGCTTCGACGTTCCA
CGTCGTACATCGTTCGCAGCAGGATAAAACGAAAGAGGGCGAAGAAGACG
CCTCCAAGTTCGTCCTCATCCCTTCAGTGCAGGGGCGAAAGAAGAAGTTC
ATCGACAAGAAGCAGGCTTCGACGTTCCACGTCGTACATCGTTCGCAGCA
GGATAAAACGAAAGAGGGCGAAGAAGACGCCTCCAAGTTCGTCCTCATCC
CTTCAGTGCGGCCTCGAGACGACCGAGGCCAAGACAAGAGGGATGGAGAT
GATCAGGATGTCTCCGGCGAAGGAACAAGATTTGCGGGGAAGAGAAATCA
CATAAACGCCTTGGGTTTCCCGAACGACGGATACGACTACGAGCAGCACA
TCAAGTCCATGGCGGCCTCGAGACGACCGAGGCCAAGACAAGAGGGATGG
AGATGATCAGGATGTCTCCGGCGAAGGAACAAGATTTGCGGGGAAGAGAA
ATCACATAAACGCCTTGGGTTTCCCGAACGACGGATACGACTACGAGCAG
CACATCAAGTCCATGGTAGGTGGTGGAACTTTTGTGACTAAGAGCGGAAA
GGTGGATCACTTTGCAGCGGGAAGCGCCGGCTCCAGAGCGGGGGGGGCGG
CGTTGACTATCCCCGTGGAGGCGTTGCCTTCCGAAGAGGTGCTGGACCGA
CAGCTGGAGGCAGTCACCATTAGCGAAATAGGTGGTGGAACTTTTGTGAC
TAAGAGCGGAAAGGTGGATCACTTTGCAGCGGGAAGCGCCGGCTCCAGAG
CGGGGGGGGCGGCGTTGACTATCCCCGTGGAGGCGTTGCCTTCCGAAGAG
GTGCTGGACCGACAGCTGGAGGCAGTCACCATTAGCGAAAAGGTGATGGA
CTCTGATATGAGGAAGGCTCTCGCCGGCGAGCTGTACGGCGTAGAAGAAG
ATTCATTCGTAGATGAGAACAACCTGCTGGACGACGACTTCGTTATTCAG
GCGGCAGGGGCAGACGACAGGTGATGGACTCTGATATGAGGAAGGCTCTC
GCCGGCGAGCTGTACGGCGTAGAAGAAGATTCATTCGTAGATGAGAACAA
CCTGCTGGACGACGACTTCGTTATTCAGGCGGCAGGGGCAGACGACGGTG
AGGTCGGCTTCGATTTCGACGCACACGTCGCCAGGCTGATGGACGCCAGC
GCAAGGGAGACGGGCCTCCGAGAGAGAACGGCGGAAGACGACCTAGAGAT
GAAGGGTCTGGCGCGCTTGCGGAAAGGCGGGGGCGGGAGTTCCTACGCGG
GCAGCGATCTCGACGCGGAATCGGATAGAAGTGGAGAGTTCGACGAGACA
TTGTTGGAGGGATTGAATGTCGAAGAGGGCCAAGGGGGTGGAGGGGATGT
TGGCGTTCTTGGTGAGGGGACGGAGGAGCGAGCGGTGCTGGATTCTCAAT
TTGAAGCGGGTGAGGTCGGCTTCGATTTCGACGCACACGTCGCCAGGCTG
ATGGACGCCAGCGCAAGGGAGACGGGCCTCCGAGAGAGAACGGCGGAAGA
CGACCTAGAGATGAAGGGTCTGGCGCGCTTGCGGAAAGGCGGGGGCGGGA
GTTCCTACGCGGGCAGCGATCTCGACGCGGAATCGGATAGAAGTGGAGAG
TTCGACGAGACATTGTTGGAGGGATTGAATGTCGAAGAGGGCCAAGGGGG
TGGAGGGGATGTTGGCGTTCTTGGTGAGGGGACGGAGGAGCGAGCGGTGC
TGGATTCTCAATTTGAAGCGACCCTGGCGGCATACGACAGCGACGAATGG
GGAGAGCTGGAGGAAGACGACGAACGCGTCAAGGGTCAATGACCCTGGCG
GCATACGACAGCGACGAATGGGGAGAGCTGGAGGAAGACGACGAACGCGT
CAAGGGTCAATGGGATCCCGAGCAACAGCAGTACGCGAACAGGTGCCTAG
ACGAGTTCCTCGCCAATAAGGAAGAGGCCAACTGGGTGGATGGGTTTAAG
CGCCTGCCCCTGGAGCAACGCGCGATCACGGTCGAGACTCTCGTGAACGG
AGATGCTGTTGGAAACCCCAGTGAAGGCCGCGGAGACGAGACGGGAACAG
AGGCGGGTAAATCCCCTGGTGAAGTTGTTGGGGTCGTTGGGGGGTTGTCT
GCGTCCGGACCGCGGTTGGGCAAGTTACGAGGTCTGGGGCGGGAGGGCTT
GGAGGACGAAGAGGGAGATCAAGTCGAGGAGGATGATGACGAAGAGGGGA
TAGACGACTTTCTCGATGACATCGGACGGCACAATGAGTACCTACGGGAA
AGACAGGGATCCCGAGCAACAGCAGTACGCGAACAGGTGCCTAGACGAGT
TCCTCGCCAATAAGGAAGAGGCCAACTGGGTGGATGGGTTTAAGCGCCTG
CCCCTGGAGCAACGCGCGATCACGGTCGAGACTCTCGTGAACGGAGATGC
TGTTGGAAACCCCAGTGAAGGCCGCGGAGACGAGACGGGAACAGAGGCGG
GTAAATCCCCTGGTGAAGTTGTTGGGGTCGTTGGGGGGTTGTCTGCGTCC
GGACCGCGGTTGGGCAAGTTACGAGGTCTGGGGCGGGAGGGCTTGGAGGA
CGAAGAGGGAGATCAAGTCGAGGAGGATGATGACGAAGAGGGGATAGACG
ACTTTCTCGATGACATCGGACGGCACAATGAGTACCTACGGGAAAGACAG
CCGGAACTGTGGGACTGTGAGACCATTGTCAGCACCTACTCGAACCTCGA
TAATCATCCCTCCGTGCTCGGGACTGGCCGTAAGGCCAAGCCGCGAAAGC
CTCGAGGCCCTCTAGCCTCTGAGAACGCCGGGGGCGTCTCGAGCGTGGCA
GACGCATCAATATCGATAGTGACAAAGGTGGTCTTGTCAGAAAAGACCGG
AATACCCCTGGGCGTACTCCCGGAGAGGGTGCCGAACGAAAGCCGGAACT
GTGGGACTGTGAGACCATTGTCAGCACCTACTCGAACCTCGATAATCATC
CCTCCGTGCTCGGGACTGGCCGTAAGGCCAAGCCGCGAAAGCCTCGAGGC
CCTCTAGCCTCTGAGAACGCCGGGGGCGTCTCGAGCGTGGCAGACGCATC
AATATCGATAGTGACAAAGGTGGTCTTGTCAGAAAAGACCGGAATACCCC
TGGGCGTACTCCCGGAGAGGGTGCCGAACGAAAGGGGCATGATATCGTTG
ACCGCGGGAAAAAACTTCGGTGAAAAGCGCGACGCGGAAGAAACCGTGGA
GGAAAAGCGTCAGAGAAAAGCCAAGATAAAGGAAGAGAAGCGGGTAAGTC
CTAAACGTTAAGGGCATGATATCGTTGACCGCGGGAAAAAACTTCGGTGA
AAAGCGCGACGCGGAAGAAACCGTGGAGGAAAAGCGTCAGAGAAAAGCCA
AGATAAAGGAAGAGAAGCGGGTAAGTCCTAAACGTTAA
back to top