mRNA_H-elongata_contig20246.5733.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20246.5733.1
Unique NamemRNA_H-elongata_contig20246.5733.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 4.100e-66
Identity = 91/127 (71.65%), Postives = 111/127 (87.40%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GHLEFF+C+ +D+ DPDGVVTQGCFNMHPLDRA+DDGDASPIDP++ GRY+LDP CR+ ETDQ  +PGA+ G+V T RY+LP+G+TCSRCI+QMVYYTGN+C HPGYD+F+P S P  CAP KEDW+
Sbjct:  214 GHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWV 340          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 5.080e-60
Identity = 90/128 (70.31%), Postives = 100/128 (78.12%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH+E FLCD DDL D PD VVTQ CFN +PLDRAEDD   SPIDP   GR+ LDP CR++ETDQ L+PGAF G+V T R+QLP GVTC RC+VQMVYYTGNSC H GY +FNP SWPS CAP K DWI
Sbjct:   97 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 224          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 8.660e-58
Identity = 88/128 (68.75%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH+E FLCD DDL D PD VVTQ CFN +PLDRAEDD    PIDP   GR+ LDP CR++ETDQ L+PGAF G+V T R+QLP GVTC RC+VQM YYTGNSC H GY +FNP SWPS CAP K DWI
Sbjct:  146 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 273          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 6.590e-57
Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH+EFF+C+ D+++DPDG+  Q CFN +PL RAE D + SPIDPNYPGRY++DP CR  ETDQT   GA  G V+   YQLP G+TC RCI+QM YYTGNSC H GY++F P SWPS CAP+K DWI
Sbjct:  125 GHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWI 251          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 6.800e-56
Identity = 84/127 (66.14%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH EFF+C+TDD+DDPDGV TQ CFNMHPL RA+DDGDASPIDPNYPGRY++DP CR  ET+Q+    +  G  +  RY LP  + C  CI+QMVYYTGN+C H GY++FNPTSWPS CAP+K DWI
Sbjct:  154 GHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQS--SNSIEGYNIKMRYVLP-DIECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWI 277          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.920e-54
Identity = 85/128 (66.41%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH+E FLCDT DL +  D +VTQ CFN +PLDRA DD    PIDP Y GR+ LDP CR++ETDQ LV GA+ G+V T RYQLP GV C RC+VQMVYYTGNSC H GY +FNP SWPS CAP K DWI
Sbjct:  153 GHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWI 280          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 3.310e-54
Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH+E FLCD DDL D PD VVTQ CFN HPLDRAEDD    PIDP   GR+ LDP CR++ETDQ LVPGAF G+V T R+QLP GVTC RC+VQM Y+  NSC H GY +FNP SWP  CAP K DWI
Sbjct:  117 GHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWI 242          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.070e-53
Identity = 83/128 (64.84%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH+E FLCD DDL   PD  VTQ CFN HPLDR +DD   SPIDP+  GR+ LDP CR++ETDQ ++ GAF G+V T R++LP G+TC RC+VQMVYYTGNSC H GY +FNP SWPS CAP K DWI
Sbjct:  148 GHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWI 275          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 2.710e-52
Identity = 83/128 (64.84%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH+E FLCD +DL   PD  VTQ CFN HPLDR +DD   SPIDP+  GR+ LDP CR++ETDQ L+ GAF G+V T R++LP GV+C RC+VQMVYYTGNSC H GY +FNP SWPS CAP K DWI
Sbjct:  148 GHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWI 275          
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 9.210e-52
Identity = 77/128 (60.16%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 GHLEFFLCDTDDLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGNSCMHPGYDDFNPTSWPSECAPDKEDWI 381
            GH+E FLC+  +L   PD  VTQ CFN HPLDRA+DD    P DP+  GR+ LDP CR++ETDQ L+ GA+  +V T R++LP G++C RC+VQMVYYTGNSC H GY +FNP SWPS CAP K DWI
Sbjct:  149 GHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20246.5733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI36_9PHAE4.100e-6671.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FP25_ECTSI5.080e-6070.31EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI8.660e-5868.75EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI6.590e-5762.99EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMS9_ECTSI6.800e-5666.14EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D8LMF4_ECTSI1.920e-5466.41EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KD35_9PHAE3.310e-5467.19CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM92_ECTSI1.070e-5364.84EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE2.710e-5264.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM93_ECTSI9.210e-5260.16EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20246contigH-elongata_contig20246:651..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue1.9e-54
Seed eggNOG ortholog2880.D7FSZ8
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.5453722-CDS-H-elongata_contig20246:650..9391622930138.5453722-CDS-H-elongata_contig20246:650..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20246 651..939 +
1691679295.7190797-CDS-H-elongata_contig20246:650..9391691679295.7190797-CDS-H-elongata_contig20246:650..939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20246 651..939 +
1622930138.5595431-CDS-H-elongata_contig20246:1327..14191622930138.5595431-CDS-H-elongata_contig20246:1327..1419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20246 1328..1419 +
1691679295.7305117-CDS-H-elongata_contig20246:1327..14191691679295.7305117-CDS-H-elongata_contig20246:1327..1419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20246 1328..1419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20246.5733.1prot_H-elongata_contig20246.5733.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20246 651..1419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20246.5733.1

>prot_H-elongata_contig20246.5733.1 ID=prot_H-elongata_contig20246.5733.1|Name=mRNA_H-elongata_contig20246.5733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
GHLEFFLCDTDDLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRY
FLDPTCRSTETDQTLVPGAFIGNVVTGRYQLPAGVTCSRCIVQMVYYTGN
SCMHPGYDDFNPTSWPSECAPDKEDWI
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mRNA from alignment at H-elongata_contig20246:651..1419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20246.5733.1 ID=mRNA_H-elongata_contig20246.5733.1|Name=mRNA_H-elongata_contig20246.5733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=769bp|location=Sequence derived from alignment at H-elongata_contig20246:651..1419+ (Himanthalia elongata Himel1 dioecious)
GGCCACCTTGAGTTTTTTCTTTGCGATACTGATGATCTGGACGACCCAGA CGGTGTGGTGACCCAGGGGTGCTTCAACATGCATCCGTTGGACCGAGCGG AAGACGATGGAGACGCGTCGCCCATAGACCCCAATTACCCTGGAAGATAC TTCCTTGACCCCACCTGCAGGTCTACGGAAACGGACCAGACTCTCGTTCC CGGTGCATTCATTGGTAACGTCGTAACGGGTCGATACCAGCTCCCGGCGG GTGTTACCTGCTCTCGCTGCATCGTGCAGATGGTCTACTGTGAGTAATAT GTTGGTGTATGATGATCATGATAGTTTATCGTCGCCTTTCTGTCATAAAG TTGTGCTCTTGTTAAGTATCTCTATTGCTGACCTTGCCACGAGGTACAAG CCCAAAATATGGGAACATATAATATTCGGAACTAGTTTCAAAAACAGATA TATAAACTGGTTGGTTTTGGGGTGCTACCGTTGAAGGGTTGTTGGATGGC AAGCAAGATCAAGCTGCAATCGTTGGATAATAGTCCCTGTAACAGCCAAC TGCGTTTAGCGCGGCCTTTAACAATCATACCGAATCTTCGTTTGCCTCAC ACTCAATCGGCGTGCGTGACGACTGAGCACATAACTTCGCGGCACATTCT TCACACCGTCATTTACCTACGGCACAGACACCGGCAATTCTTGCATGCAC CCGGGTTACGATGACTTCAACCCTACTTCCTGGCCAAGCGAATGCGCCCC AGACAAAGAAGACTGGATC
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Coding sequence (CDS) from alignment at H-elongata_contig20246:651..1419+

>mRNA_H-elongata_contig20246.5733.1 ID=mRNA_H-elongata_contig20246.5733.1|Name=mRNA_H-elongata_contig20246.5733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig20246:651..1419+ (Himanthalia elongata Himel1 dioecious)
GGCCACCTTGAGTTTTTTCTTTGCGATACTGATGATCTGGACGACCCAGA
CGGTGTGGTGACCCAGGGGTGCTTCAACATGCATCCGTTGGACCGAGCGG
AAGACGATGGAGACGCGTCGCCCATAGACCCCAATTACCCTGGAAGATAC
TTCCTTGACCCCACCTGCAGGTCTACGGAAACGGACCAGACTCTCGTTCC
CGGTGCATTCATTGGTAACGTCGTAACGGGTCGATACCAGCTCCCGGCGG
GTGTTACCTGCTCTCGCTGCATCGTGCAGATGGTCTACTGGCCACCTTGA
GTTTTTTCTTTGCGATACTGATGATCTGGACGACCCAGACGGTGTGGTGA
CCCAGGGGTGCTTCAACATGCATCCGTTGGACCGAGCGGAAGACGATGGA
GACGCGTCGCCCATAGACCCCAATTACCCTGGAAGATACTTCCTTGACCC
CACCTGCAGGTCTACGGAAACGGACCAGACTCTCGTTCCCGGTGCATTCA
TTGGTAACGTCGTAACGGGTCGATACCAGCTCCCGGCGGGTGTTACCTGC
TCTCGCTGCATCGTGCAGATGGTCTACTACACCGGCAATTCTTGCATGCA
CCCGGGTTACGATGACTTCAACCCTACTTCCTGGCCAAGCGAATGCGCCC
CAGACAAAGAAGACTGGATCACACCGGCAATTCTTGCATGCACCCGGGTT
ACGATGACTTCAACCCTACTTCCTGGCCAAGCGAATGCGCCCCAGACAAA
GAAGACTGGATC
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