mRNA_H-elongata_contig202448.5732.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202448.5732.1
Unique NamemRNA_H-elongata_contig202448.5732.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.660e-28
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    4 VLLSFGAEEGRALYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGNKEYIPM 219
            VLL F A EG+ALYPNMAR ARVLLSVPAS+AVLERDFSTAGRLITG+RSRL+  YV+M LFLNGN+EYIPM
Sbjct:  711 VLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM 782          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 7.900e-14
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   43 YPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGNKEYIP 216
            YP +ARVARV+   PASAAVLERDFS AGR++T SRS +  +YV+M +FL+GN + IP
Sbjct:  618 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIP 675          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.610e-13
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   40 LYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRL-AGEYVKMTLFLNGNKEYIP 216
            +YP +ARVARV+   PASAAVLERDFS AGR++T SR  + +  YV+M LFL+GN + IP
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIP 64          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-12
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   43 YPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGNKEYIP 216
            YP +ARVARV++   ASAAVLE DFS AGR++T SRS +  +YV+M LFL+GN + IP
Sbjct:  391 YPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIP 448          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.930e-10
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   40 LYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGNKEYIP 216
            LYP +AR ARV+   PASAAVLERDF+ A  ++  SRS    +YV+M LFL+GN + IP
Sbjct:  557 LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIP 615          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-9
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   61 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGNKEYIPM 219
            VARVL S+P+S+A +ERDF TAGR++T  RS LA   V MT FLN N+ Y+ +
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDI 94          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 57.0 bits (136), Expect = 1.200e-8
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   61 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGNKEYI 213
            VARV+ S+P+S+A +ERDF TAGR++T  R+ LA   V MT FLN N+ Y+
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYV 60          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 57.4 bits (137), Expect = 4.350e-8
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   25 EEGRALYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGN 201
            +E   ++P++AR+AR +LS+PA++A  ERDFSTAG +I+  RS+L+ E V   LFL+ N
Sbjct:  175 KEHSEMFPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: A0A0W8D5H4_PHYNI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D5H4_PHYNI)

HSP 1 Score: 55.8 bits (133), Expect = 1.350e-7
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   61 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGNKEYIPM 219
            VARVL S+P+S+A +ERDF TAGR++T  RS L    V M ++LN N+ Y+ +
Sbjct:  158 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNRSYVDI 210          
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Match: W2QQF5_PHYPN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QQF5_PHYPN)

HSP 1 Score: 55.8 bits (133), Expect = 2.500e-7
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   61 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVKMTLFLNGNKEYIPM 219
            VARVL S+P+S+A +ERDF TAGR++T  RS L    V M ++LN N+ Y+ +
Sbjct:  386 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNRSYVDI 438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202448.5732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE3.660e-2881.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE7.900e-1462.07Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE2.610e-1360.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE2.400e-1260.34Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI4.930e-1055.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA1.260e-956.60Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
H3GTQ6_PHYRM1.200e-854.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
UPI0019661A934.350e-849.15zinc finger BED domain-containing protein DAYSLEEP... [more]
A0A0W8D5H4_PHYNI1.350e-750.94Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ph... [more]
W2QQF5_PHYPN2.500e-750.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202448contigH-elongata_contig202448:751..972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.499696-CDS-H-elongata_contig202448:750..9721622930138.499696-CDS-H-elongata_contig202448:750..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202448 751..972 +
1691679295.7112014-CDS-H-elongata_contig202448:750..9721691679295.7112014-CDS-H-elongata_contig202448:750..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202448 751..972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202448.5732.1prot_H-elongata_contig202448.5732.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202448 751..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202448.5732.1

>prot_H-elongata_contig202448.5732.1 ID=prot_H-elongata_contig202448.5732.1|Name=mRNA_H-elongata_contig202448.5732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
SVLLSFGAEEGRALYPNMARVARVLLSVPASAAVLERDFSTAGRLITGSR
SRLAGEYVKMTLFLNGNKEYIPM*
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mRNA from alignment at H-elongata_contig202448:751..972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202448.5732.1 ID=mRNA_H-elongata_contig202448.5732.1|Name=mRNA_H-elongata_contig202448.5732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig202448:751..972+ (Himanthalia elongata Himel1 dioecious)
TCGGTGCTGCTTTCGTTCGGGGCCGAGGAGGGGCGGGCGCTCTACCCTAA CATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTGCCG TCCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGTCCCGT AGCCGGCTGGCGGGCGAATACGTTAAGATGACGCTGTTTCTCAACGGCAA CAAGGAGTATATCCCCATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig202448:751..972+

>mRNA_H-elongata_contig202448.5732.1 ID=mRNA_H-elongata_contig202448.5732.1|Name=mRNA_H-elongata_contig202448.5732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig202448:751..972+ (Himanthalia elongata Himel1 dioecious)
TCGGTGCTGCTTTCGTTCGGGGCCGAGGAGGGGCGGGCGCTCTACCCTAA
CATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTGCCG
TCCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGTCCCGT
AGCCGGCTGGCGGGCGAATACGTTAAGATGACGCTGTTTCTCAACGGCAA
CAAGGAGTATATCCCCATGTAGTCGGTGCTGCTTTCGTTCGGGGCCGAGG
AGGGGCGGGCGCTCTACCCTAACATGGCGCGCGTGGCTCGAGTTCTTCTG
TCTGTGCCGGCATCTGCTGCCGTCCTCGAGAGGGACTTCAGCACGGCCGG
GCGCCTCATCACCGGGTCCCGTAGCCGGCTGGCGGGCGAATACGTTAAGA
TGACGCTGTTTCTCAACGGCAACAAGGAGTATATCCCCATGTAG
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