mRNA_H-elongata_contig20234.5726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20234.5726.1
Unique NamemRNA_H-elongata_contig20234.5726.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: D8LLI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI1_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 1.320e-120
Identity = 181/229 (79.04%), Postives = 202/229 (88.21%), Query Frame = 3
Query:    9 GATLLGVVAITGGAASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEGKF 695
            GA +LG V +  G  +PASA S AEANK+LS ++LPPVVD PGGFNTL+EGYG DG LKN+LGSSNRDP LVTWNYPKGW+V RPNTDTNKEAGTVSTGDYGRGDSA LFVA K+L+GGSSLS K+T+EGV+KKAL+QKG+NQFQSFKLK VK+G TD+ GNKYYIADFQYELLTGAGF VERKGVASV Q+GN+V AVVGATTA+RAKTVK QLQEIA SFR YEGKF
Sbjct:   69 GAAVLGAVVVGTGVPAPASAGSVAEANKRLSEYNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLIGGSSLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGETDFNGNKYYIADFQYELLTGAGFTVERKGVASVTQIGNSVNAVVGATTANRAKTVKPQLQEIARSFRVYEGKF 297          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A835Z8Y2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y2_9STRA)

HSP 1 Score: 192 bits (487), Expect = 4.090e-54
Identity = 105/213 (49.30%), Postives = 135/213 (63.38%), Query Frame = 3
Query:   57 PASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLS--DKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEG 689
            PASA      N +L+ + LP V   P G   L+E YG D          NR+  LVTWNYP GW+  RP+ DTN E GTV+TGDY +GDSA L V    ++GG  LS  +K  VE ++ +++ QKG NQ Q+FKLK V EGAT   G +Y   +F+Y+LLTGAGFIVER G  S+ QVG  V +V+  TTA+R K ++ +LQEIA SFR Y+G
Sbjct:   77 PASALGLKAVNARLADYGLPGVGKPPDGMKALLEIYGRD---------QNRETLLVTWNYPNGWITQRPSLDTNSEDGTVATGDYQKGDSAFLVVQPLDVLGGEKLSATNKALVEKLVLQSITQKGANQIQNFKLKKVTEGATGAKGQQYINVEFKYDLLTGAGFIVERVGYGSLTQVGKGVQSVMAVTTAARLKKLQPKLQEIATSFRVYDG 280          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A4D9DCV0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCV0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 6.920e-48
Identity = 96/215 (44.65%), Postives = 131/215 (60.93%), Query Frame = 3
Query:   45 GAASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEG 689
            G   PA AA  ++ N +L+S+ LPP++D PGGF+ LVE YG   G K       R+  LV + YP  WVV++P+ D N E GT+S GDY +GDSAA +V      G       +    V+ +A+ QK  N +Q+FK+   + GA    G +Y I +F+YELLTGAGF V+RKGVASV QVG NV  +  ATTA+R K + +    +A+SFR Y+G
Sbjct:   13 GVVQPAQAAGLSKVNGELASYGLPPILDVPGGFSPLVEVYGKAAGAKK-----ERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVTRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 222          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: W7TXP4_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXP4_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.340e-47
Identity = 96/215 (44.65%), Postives = 131/215 (60.93%), Query Frame = 3
Query:   45 GAASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEG 689
            G   PA AA  ++ N +L+ + LPP++D PGGF+ LVE YG   G K       R+  LV + YP  WVV++P+ D N E GT+S GDY +GDSAA +V      G       +    V+K+A+ QK  N +Q+FK+   + GA    G +Y I +F+YELLTGAGF V+RKGVASV QVG NV  +  ATTA+R K + +    +A+SFR Y+G
Sbjct:  104 GVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKK-----ERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 313          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A7S2V7M0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7M0_9STRA)

HSP 1 Score: 168 bits (425), Expect = 6.470e-45
Identity = 92/225 (40.89%), Postives = 138/225 (61.33%), Query Frame = 3
Query:   27 VVAITGGAASPASAASTAEANKKLSSFDLPPVV-DAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSD-KNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEGKF 695
            +  + G +   A A S  EAN +L+++ + P   + P GF+ LVE +G DG          R P+L+++ YP  WV+ +P+  TN E+GT + G+Y +GDSAA++V    + G   ++  K+ +  ++   L QKG+NQ+Q+FK   +  GAT   G KYY+ DF+YELLTGAGF ++R+GVA+V     NV A+V ATT +R K +   L  IA+SFRAY+GK 
Sbjct:   75 IAGVLGSSPQSAEAKSIKEANNELTNYGVSPFEGNVPQGFSPLVEVWGKDG---------IRPPYLISFLYPALWVIQKPSMTTNGESGTYAAGNYQKGDSAAVYVGPSEVDGNDVMAKGKDYISSIVLGGLTQKGENQYQNFKTTKIVAGATGLKGQKYYVVDFKYELLTGAGFYIDRRGVAAVTGTPKNVQAIVCATTDTRYKKLADDLHVIADSFRAYDGKI 290          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: F0YP05_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP05_AURAN)

HSP 1 Score: 157 bits (396), Expect = 2.850e-41
Identity = 94/231 (40.69%), Postives = 136/231 (58.87%), Query Frame = 3
Query:   48 AASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEGKFS*GP*RARGYLVSDD 740
            A +PA A   A+ N+KL    LPPV   P GF+ ++     D  L            +V +N+P  W+V +P+ +TN E+GTVS GDYG+GDSAAL+V++    G     DK     +I K LAQKGDNQFQ+F+++ V  G+ +       + DF+YELLTGAGF VER+GVA+V+ V     A++  TT++R K ++ +L++I +SFR Y+   S       G L+ DD
Sbjct:   49 APAPALAYDLAKYNRKLDKLGLPPVAGIPDGFSPVLSSVNQDQSL------------IVQFNHPNAWLVVKPSVNTNGESGTVSAGDYGKGDSAALYVSDLPPGG-----DKAFYAKLIAKGLAQKGDNQFQNFRVRAVSPGSPNA------VVDFEYELLTGAGFTVERRGVAAVSGVAGKSQALLAVTTSARYKKLEPELRKIVDSFRVYDKVRS----VETGALLDDD 252          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A6U3V0C4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3V0C4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.210e-39
Identity = 83/200 (41.50%), Postives = 118/200 (59.00%), Query Frame = 3
Query:   87 NKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVA-NKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAY 683
            N KL+S+ LPP+ + P GF+ LVE YG            NR P LV++ +P  W+VT P+ D N E GT+  G+Y +GD+A  ++  +   V   S   K+  +  I +A++QKGD+ +Q FK+  V+    DY   +Y I DF+Y LLTGAGF V+R+GVASV   GN V  +  A+T  R K ++  L+ IA SFR Y
Sbjct:   70 NAKLASYGLPPIANVPSGFSPLVEVYGK---------GRNRTPLLVSFVHPLDWIVTLPSQDVNGEDGTIQAGEYAKGDTATFYILPDSGKVDNISEQPKDFFKNAISRAISQKGDSIYQDFKITKVEPVKGDYNNQQYVICDFKYTLLTGAGFEVDRQGVASVTSEGNAVEVLWTASTRQRYKKLEEGLRSIAGSFRVY 260          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A7R9WJF7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJF7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 8.140e-38
Identity = 87/214 (40.65%), Postives = 126/214 (58.88%), Query Frame = 3
Query:   45 GAASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFV-ANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAY 683
            G  +PA AA  ++ N KL +  LP +   P GF+ L+E +G           +NR P LV + +P  WVVT P+ D N E GTV  G+YG+GD+A  FV  ++  V   +   K+  E V++KA++QK  N +Q+FK+  ++     Y    Y I DF+Y+L+TGAGF V+RK VASV   G  V A+  A+TA R K ++  L++IA+SFR Y
Sbjct:   68 GPVAPAHAAKLSKVNAKLEALGLPAMGKVPDGFSPLLELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTVQAGEYGKGDTATFFVYEDEGNVADIASQPKSFFENVLQKAISQKSANIYQNFKVTNIQPTKGGYQDQTYMIVDFKYQLVTGAGFEVDRKAVASVTSQGKAVEALWCASTAVRYKKLEPALRDIASSFRVY 272          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A7S4MBN6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBN6_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.580e-37
Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   87 NKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANK-ALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAY 683
            N KL+S  LP +   P GF+ L E +G           +NR P LV + +P  WVVT P+ D N E GT+  G+YG+GD++  FV  +   V   +   K+  E V++KA++QK  N +Q+FK+K ++    +Y    Y I DFQY+L+TGAGF V+RK VASV   GN V A+  A+TA R K ++  L++IA SFR Y
Sbjct:   82 NAKLASLGLPEMKKLPDGFSPLCELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTIQAGEYGKGDTSTFFVYEEPGNVADIASQPKSFFEDVLQKAISQKSANIYQNFKVKNIQPTKGEYKDQTYVIVDFQYQLVTGAGFEVDRKAVASVTSQGNAVEALWCASTAIRYKKMEPALRDIAGSFRVY 272          
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A7S2RLR6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLR6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 9.670e-37
Identity = 88/205 (42.93%), Postives = 121/205 (59.02%), Query Frame = 3
Query:   90 KKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSD--KNTVEGVIKKALAQKGDNQFQSFKLKGVK--EGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGN-NVAAVVGATTASRAKTVKSQLQEIANSFRAYEG 689
            +++  + +     AP GF+ +V  YG             +DP LVT+N P GW+V RPN D N E GTVS+GDYG+GDSAALF+     + G SL+D  K   E ++   + QKG++  Q FKL+ ++  E  T+     YY+ DF Y LLTGAGF V RKG  SV  VG+ +V A++GA+T  R K  +  L+E+A SFR Y G
Sbjct:   83 RQMQGYGIKDYKQAPDGFSPVVGFYGR--------AVPGQDPLLVTYNSPSGWLVVRPNIDNNGEDGTVSSGDYGKGDSAALFIGPP--LKGGSLADQPKEYFEKLVFAGVTQKGESMVQGFKLRKIQKLEANTE---TPYYLVDFTYTLLTGAGFEVNRKGTGSVTAVGDKSVQAMIGASTDVRFKKTEPLLREVAESFRVYGG 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLI1_ECTSI1.320e-12079.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8Y2_9STRA4.090e-5449.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DCV0_9STRA6.920e-4844.65Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TXP4_9STRA2.340e-4744.65Uncharacterized protein n=3 Tax=Nannochloropsis ga... [more]
A0A7S2V7M0_9STRA6.470e-4540.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YP05_AURAN2.850e-4140.69Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A6U3V0C4_9STRA2.210e-3941.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9WJF7_9STRA8.140e-3840.65Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4MBN6_9STRA1.580e-3742.00Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2RLR6_9STRA9.670e-3742.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20234contigH-elongata_contig20234:3083..6940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.7
Seed ortholog evalue3e-77
Seed eggNOG ortholog2880.D8LLI1
EggNOG OGs2C1GZ@1,2S4FV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMog1/PsbP, alpha/beta/alpha sandwich
Ec32 orthologEc-22_001060.1
Exons6
Model size1385
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20234.5726.1prot_H-elongata_contig20234.5726.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20234 3893..6256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930137.8415792-UTR-H-elongata_contig20234:3082..31851622930137.8415792-UTR-H-elongata_contig20234:3082..3185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20234 3083..3185 +
1691679295.437776-UTR-H-elongata_contig20234:3082..31851691679295.437776-UTR-H-elongata_contig20234:3082..3185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20234 3083..3185 +
1622930137.8574145-UTR-H-elongata_contig20234:3828..38921622930137.8574145-UTR-H-elongata_contig20234:3828..3892Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20234 3829..3892 +
1691679295.447382-UTR-H-elongata_contig20234:3828..38921691679295.447382-UTR-H-elongata_contig20234:3828..3892Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20234 3829..3892 +
1622930137.948557-UTR-H-elongata_contig20234:6256..69401622930137.948557-UTR-H-elongata_contig20234:6256..6940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20234 6257..6940 +
1691679295.5007486-UTR-H-elongata_contig20234:6256..69401691679295.5007486-UTR-H-elongata_contig20234:6256..6940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20234 6257..6940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930137.8721-CDS-H-elongata_contig20234:3892..39541622930137.8721-CDS-H-elongata_contig20234:3892..3954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 3893..3954 +
1691679295.4555802-CDS-H-elongata_contig20234:3892..39541691679295.4555802-CDS-H-elongata_contig20234:3892..3954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 3893..3954 +
1622930137.886521-CDS-H-elongata_contig20234:4222..44181622930137.886521-CDS-H-elongata_contig20234:4222..4418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 4223..4418 +
1691679295.464163-CDS-H-elongata_contig20234:4222..44181691679295.464163-CDS-H-elongata_contig20234:4222..4418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 4223..4418 +
1622930137.9013863-CDS-H-elongata_contig20234:5046..51021622930137.9013863-CDS-H-elongata_contig20234:5046..5102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 5047..5102 +
1691679295.4732227-CDS-H-elongata_contig20234:5046..51021691679295.4732227-CDS-H-elongata_contig20234:5046..5102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 5047..5102 +
1622930137.9188755-CDS-H-elongata_contig20234:5489..55891622930137.9188755-CDS-H-elongata_contig20234:5489..5589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 5490..5589 +
1691679295.4832296-CDS-H-elongata_contig20234:5489..55891691679295.4832296-CDS-H-elongata_contig20234:5489..5589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 5490..5589 +
1622930137.9333634-CDS-H-elongata_contig20234:6136..62561622930137.9333634-CDS-H-elongata_contig20234:6136..6256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 6137..6256 +
1691679295.490923-CDS-H-elongata_contig20234:6136..62561691679295.490923-CDS-H-elongata_contig20234:6136..6256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20234 6137..6256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20234.5726.1

>prot_H-elongata_contig20234.5726.1 ID=prot_H-elongata_contig20234.5726.1|Name=mRNA_H-elongata_contig20234.5726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGR
GDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVK
EGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGAT
TASRAKTVKSQLQEIANSFRAYEGKFS*
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mRNA from alignment at H-elongata_contig20234:3083..6940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20234.5726.1 ID=mRNA_H-elongata_contig20234.5726.1|Name=mRNA_H-elongata_contig20234.5726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3858bp|location=Sequence derived from alignment at H-elongata_contig20234:3083..6940+ (Himanthalia elongata Himel1 dioecious)
GGATAGTCGGCGCTACCCTCCTCGGAGTAGTGGCGATCACCGGTGGCGCG GCATCCCCGGCCAGCGCGGCATCAACCGCTGAGGCCAACAAGAAGCTGTC TTCGTGAGTTTATGGCCACGGAATCTCGGCTCGCATACTTCTCGAAAAAT ATTGCACTCATACGATAGCGTGTACAGGTGAAATAGCGTGCCTAGGACTG TCTCAGACCCCCCCCCCTGCATGCCTCCTTATATTCGTCGGAGGATTCGG ATCTTTTTCACTCCTATCTAGCGACATAGAGGCTTCACCCACCACCTCTT TTTTCTGCACTGATATACAGCACCCATAACCACCATTGCTTTGCATGTCT TCCGCTCACGATTCGCCGCTCGACAACGCTCTGTCGAGGACCGAGGGCGG GGCGAGTCATAAGTATTTTCTTGTGAACGCAAAATGTACTCTGTACTTCG TACCAATGAGGCATATAATTTCGAATCGTCAATATCCCGGGATGTGCGTT CCGGCCGCCTTGTGCTTGTGGTCTGTGCGCAAACTCGAGGGGGGAGATTC GGTCGTAGCCATGGTTCGCCAGCGAGAACGCCTCCCGTGGGGAACACTTC GCCATGCCTGCTAGAAGCGTGCAAATTAACCCGTATGTGTCTCTCTCGCT TATCTCGGAATGTGGTAGACGCCATGGGCACCTGAGCGCGTAAGCTCTCT CTTTCCCCTTTGATGAACTCCGCTCCGCGCTCACGCTTTATCATAGATTC GACCTGCCCCCAGTGGTAGACGCCCCCGGCGGCTTTAACACCTTGGTGGA GGGATATGGAATGGATGGAGGGCTCAAGAACACTCTCGGCTCCAGCAACC GAGATCCTTTTTTGGTGACCTGGTGAGAAACCCCTTGAACGGCGCGCCTT CAATATTGGATAAGCAACAGCGACGAGAACGCTGGCTGCTGCTGCCAATG GGCGGAGGACCGAATTCTCTGCCCTTCGTAAGCGTCGTGCTGCTTATCGG AGACCATCTGCAATCATATTGTTACGGCGCGCCATGGTTGACACCCTTCA CCGGTTGAGGCGGGGTCATTGCCACGTTCCAGATAGACGCTCTCGTTTCC CATCAACCCAACGGTGCGGGGCGTATTCTCAACGCCACAGGAACTATCCT AAGGGGTGGGTCGTTACCCGACCAAACACCGACACCAACAAGGAGGCGGG CACCGTGTCGACGGGAGACTACGGCAGGGGCGACTCTGCGGCGCTTTTCG TGGCCAACAAGGCGCTTGTGGGTGGGAGTAGCCTGTCCGACAAGAACACC GTGGAAGGCGTGATCAAGAAAGCGTTGGCGCAGAAGGTGCTGTCGCACCG GAAGCGGCGTATTTCCGCCGCAGCGTTGGCGGCTTACAGCAAGCTACTCA CACTATAGGAACGAAAACCTAGCCGGATCTACAGGGCCCGGAATCTAGAA AGAGAGAACGGCCGCCGTTGTCGCCGCTACCCCGTCGGTTGCTAGTGAAA AAACTATTTCCGCCAAATTTCGTTCGGGACTACCTCGTAGATGATAACAA TGGCTAGGCGAATATGGCGAATGCGGTGGGCAGTGGCGGTAGTCTTCAGT TGATGCTAGCCCCCACATACTCTCACATATGTTCTATTCCGCCCCGTGCA GCAACTTGCTCTGAGCCTCCGCCGCTGCGGGGAAAACACTGCGCGCTGTC CTGGTGTAACATGCGACCTTATATCGAGGAGGGTCTTCGACGTTTCCCAT AATGTCCTTTGTTTGCCTGGCGTTGTCTTTGTTGTGACTCGTGCCGATTC CGGGAGCTTCCCTATGGTGGAAATATTCACAATTTGTTGGTAATAACTGC TTGCACGGGATGTAACACGAGGTATACAGACCGCATTTTTATGACGCTTC GACTCGCCTGGACCTTAAAGGCGTTCGTTTTACCCGCCTCTCCATTTGCT CGGCTCGACCGCAGGGCGACAATCAGTTCCAAAGCTTCAAGCTCAAGGGC GTCAAGGAGGGTGCTACCGAGTGAGCCTGCTTTGTCGGCCCGCTTATTTA GGGTCTTCGCGTCGCAGTGCAGACTGGCGATCTCCGTCATAATTCAACCT TAGCCCTGCGAGATGTGCTTAGCGGGGCAAAGCTCTTCACCGCGCCACAA TATCAGTCCGTTCGGCGCAGTATTGTGGTGCCGTGCTGGGATTCCCTACT CGTGGAATGCTTAAGTAATTTATTATATGCCTTCTATGCCTTTTCGTTTT TTCCAGTGGCAGTTCTATCGGTTGTTATGTCTCCTCCCCTCACCCCCCAT GCACCTTTTCCCGTCCCGATTGTATATATCTGGTGGACTCTCTTGTGGTT AACCTTACATTGCGTGATCCTCGTGCTTGCGTGGTGGATATACCTACGTC TCGACAGCTACGCGGGGAATAAATACTACATCGCCGACTTTCAGTACGAG CTCCTGACTGGGGCGGGCTTCATCGTGGAGCGCAAAGGCGTTGCTTCCGT CGCTCAGGTACGAGCCCTAATCGTCGCCAAGGGTCCTACAGGCTGGTGTG CACAGGCGGGTGCGCGCAGTTCGTCGTTTCGATGACAGTCCGTTGCCCTC GTTTCAGTCCTCCGATTGTGTTACTTGCTCTGTCTCTACTCAAATTGGTC GTAGCGCGGTAGTCAAAGTGGTACTGTAAGAGAATGGGAGCTGTATGCCC TGTATATAGTATATAGTATGTAGAAGGATAACACTGTCAAGGGTGAACTG TTTCTATACTATAACAAAGATAACAATGCCTGGCCGTCGAAGCTCCCAAA GGAGGCGTTCCACGGGATGTACATGATGCGCTGACCCGAGATTGATATTC TTGACCGTTATCGTTGTCAACGCTGTGCAGCATGAGAGATCAACGACGCG TGACATTCGCCCTTAAGTGAACGTTTCGATTGCTTTCGGGTACACACACA CAGACATACACACACACAAAGTGGACGTGCAGTGTTTCCTCACTTTACGA ACGCTAAGCTTGCATCGATCAATACCTCAAATATTTATTTGCTTTCGCGA TCAGGTCGGAAATAACGTGGCGGCGGTGGTTGGGGCGACGACAGCCAGTC GCGCAAAAACCGTCAAGAGCCAGCTACAGGAGATCGCCAACAGCTTCCGC GCGTACGAAGGAAAGTTCAGTTGAGGTCCCTGACGCGCTCGGGGCTATTT AGTGTCCGACGACGAGCCAAGCCCCCTCCCCCCGCCCATTCCCCCCATCC TGCCGGGGTGATGAATCGAGATATTTTATATAGAAAGATGAATAGATTAA TCGGGGACATGCGAAACGGTCTGTTGGAGGGGGTTGCCTATGCGCATCAT GAATCATACGCTCGCTCGAGCCGGACATCGTTGACAAATTCTTTTTCATT TGGTGTCCATCAGTCACCACAAGGGAGACTAGGCAACGGTTCATTACACG ACGGCGGTACACGAACTTTCATTATGCCGAAGAAACGTTATGACAGTGCA CGGGTGGTAGTGGCCCCTTTTCGCAGAGCAAGGTGGGCAAGGAATATTTT TGTGGGATCATGCGAGTGCGAATCGTGCGTCCTGTATCGGTTTTACCTGT AGGCTAAGAAGTATTCACCGATAGAGGCTATAAGAAGTATTCACCGATAG AGCAAATATTCATGCTAGCAACGGCAATAAATAGAGAGGGCAATGATTTC GATCCCCGACTACCAGCAGTTAGTTACGTGAGCAGGCACATTCTTTTTCT CGTGATGAGAAATGCTCTTGACAGAAGACCGTGATTTGGCGTTGTGCTCG ACGCGCGATCCCCTTAACCGAGGACTTTCCTCTTGGAAGCAGAGACGGCG GTGGTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig20234:3083..6940+

>mRNA_H-elongata_contig20234.5726.1 ID=mRNA_H-elongata_contig20234.5726.1|Name=mRNA_H-elongata_contig20234.5726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig20234:3083..6940+ (Himanthalia elongata Himel1 dioecious)
ATGGATGGAGGGCTCAAGAACACTCTCGGCTCCAGCAACCGAGATCCTTT
TTTGGTGACCTGATGGATGGAGGGCTCAAGAACACTCTCGGCTCCAGCAA
CCGAGATCCTTTTTTGGTGACCTGGAACTATCCTAAGGGGTGGGTCGTTA
CCCGACCAAACACCGACACCAACAAGGAGGCGGGCACCGTGTCGACGGGA
GACTACGGCAGGGGCGACTCTGCGGCGCTTTTCGTGGCCAACAAGGCGCT
TGTGGGTGGGAGTAGCCTGTCCGACAAGAACACCGTGGAAGGCGTGATCA
AGAAAGCGTTGGCGCAGAAGGAACTATCCTAAGGGGTGGGTCGTTACCCG
ACCAAACACCGACACCAACAAGGAGGCGGGCACCGTGTCGACGGGAGACT
ACGGCAGGGGCGACTCTGCGGCGCTTTTCGTGGCCAACAAGGCGCTTGTG
GGTGGGAGTAGCCTGTCCGACAAGAACACCGTGGAAGGCGTGATCAAGAA
AGCGTTGGCGCAGAAGGGCGACAATCAGTTCCAAAGCTTCAAGCTCAAGG
GCGTCAAGGAGGGTGCTACCGAGGCGACAATCAGTTCCAAAGCTTCAAGC
TCAAGGGCGTCAAGGAGGGTGCTACCGACTACGCGGGGAATAAATACTAC
ATCGCCGACTTTCAGTACGAGCTCCTGACTGGGGCGGGCTTCATCGTGGA
GCGCAAAGGCGTTGCTTCCGTCGCTCAGCTACGCGGGGAATAAATACTAC
ATCGCCGACTTTCAGTACGAGCTCCTGACTGGGGCGGGCTTCATCGTGGA
GCGCAAAGGCGTTGCTTCCGTCGCTCAGGTCGGAAATAACGTGGCGGCGG
TGGTTGGGGCGACGACAGCCAGTCGCGCAAAAACCGTCAAGAGCCAGCTA
CAGGAGATCGCCAACAGCTTCCGCGCGTACGAAGGAAAGTTCAGTTGAGT
CGGAAATAACGTGGCGGCGGTGGTTGGGGCGACGACAGCCAGTCGCGCAA
AAACCGTCAAGAGCCAGCTACAGGAGATCGCCAACAGCTTCCGCGCGTAC
GAAGGAAAGTTCAGTTGA
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