mRNA_H-elongata_contig20216.5722.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20216.5722.1
Unique NamemRNA_H-elongata_contig20216.5722.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 7.260e-88
Identity = 202/435 (46.44%), Postives = 234/435 (53.79%), Query Frame = 1 
Query:   19 SRLDPLDEAYVLDLFECPDVTVIIKGLAKRLDPNLWNTRYLAERCGTVMYHNFRRFCLAEKDPGGAFVAIPEVEKAWSSMRLCDYVRYLDKRAEARRTLAIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPCVEDGGSKDNVGGDGGDPVGGISEGNGDVGGINAGMTRREEGGXXXXXXXVEQD-----------------PCMEFTSFDGKPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMMDILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLD-EDNKRRALKILSGDLTTSDGSGVDGGGEGSRPAXXXXXXXXVRGEGEGGAVKGAVRRGVVLDGGSG--------EDMLYRLPHGPGRKPPWPSEAAIDLLREASCFGSL 1245
            +R+DPLDEAYVL LFE PDVTV+I GLA  LDP+LWNTRYL ERCG +MYH+FRRF        G FV IP  E+AWSSMRL DYVRYL+K A+A+R  A   XXXX                             XXXX               G       G  E             RR    XXXXXXX                     P M F S+DG  RT+ LL+E+VYLTDMDLTRYLPECANNL+REF MDILP G+ CAMQ+MPRESR F+GPNLYITPPGSWT  HQDGNGTVDSGHQCL GRNRVIMLRRLD E++KR AL+IL            +  G+  +P           G                               D L+R+PH  G  PPWP++ A++ LRE +   S+
Sbjct:   41 ARIDPLDEAYVLGLFERPDVTVVINGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPVREEAWSSMRLRDYVRYLNKLADAKRARATXXXXXXPADEAPSAAAAEPGQPDASVPGRNSGSVTXXXXXXXXXXXXXXXXXXAG----AKAGSQE-----------ECRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSMRFMSYDGNNRTLELLREAVYLTDMDLTRYLPECANNLSREFKMDILPAGARCAMQHMPRESRTFMGPNLYITPPGSWTQCHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILXXXXXXXXXXXAEMNGD--KPGTPVVSHAGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXEKERDSLFRMPHCDGATPPWPTDEAVERLRELNFCPSV 458
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 206 bits (524), Expect = 6.230e-55
Identity = 138/406 (33.99%), Postives = 174/406 (42.86%), Query Frame = 1 
Query:    4 DVCQRSRLDPLDEAYVLDLFECPDVTVIIKGLAKRLDPNLWNTRYLAERCGTVMYHNFRRFCLAEKDPGGAFVAIPEVEKAWSSMRLCDYVRYLDKRAEARRTLAIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPCVEDGGSKDNVGGDGGDPVGGISEGNGDVGGINAGMTRREEGGXXXXXXXVEQDPCMEFTSFDGKPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMMDILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSGDLTTSDGSGVDGGGEGSRPAXXXXXXXXVRGEGEGGAVKGAVRRGVVLDGGSGEDMLYRLPHGPGRKPPWPSEAAIDLLR 1221
            DV     + P DEAY+  L + PD+TVII+GL+  L P+LW+  YL  RC  +M H  R  C   + P         +E  W SM +  Y  YL+ RA A  TL                                                G SK              S+ NG VGG    +  + +          +  P  E T   GK   V +L E +YL D DL ++LPE   +L R F +D+LP G  C  +++P    PF+GPNLYITPPG++THFHQDG+GTVDSGHQCL GRN V+MLRR+DE NKR AL+IL                                                   G    D LY  PH  G KPPWP+E  ID LR
Sbjct:  469 DVSGTPVVHPDDEAYICQLLDRPDLTVIIRGLSDGLSPHLWSIPYLRSRCRDLMVHKLR--CFRRRSPSST----ESLETEWRSMPVHSYCNYLEARAAAHETLLGLDEVDRDEWLH-----------------------------------GRSK--------------SQANGAVGGTE--VEAKTDPISAKDSEEPQSQPLFEATDSAGKKVDVPVLDEGLYLIDFDLPKHLPELFCDLERNFKVDLLPRGRRCLFRHLPLRGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHQCLRGRNEVVMLRRMDEPNKRHALRIL-------------------------------------------------CKGCPSYDALYGKPHDAGEKPPWPTETQIDELR 768
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.380e-43
Identity = 81/203 (39.90%), Postives = 110/203 (54.19%), Query Frame = 1 
Query:  637 GKPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMMDILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSGDLTTSDGSGVDGGGEGSRPAXXXXXXXXVRGEGEGGAVKGAVRRGVVLDGGSGEDMLYRLPHGPGRKPPWPSEAAIDLLREASCFGSL 1245
            G P  + +L+E +Y+ D D+ +YLPE   +LTR   +D+LP G  C ++++P    PF+GPNLYITPPG++THFHQDG+GTVDSGH CL GRN V+MLRRLDE NK RAL+IL+G                                                      D LY +PH  G+KP WP+ + I+ LR+ +   S+
Sbjct:   34 GLPMAIPVLEEGIYMIDFDVPKYLPELQADLTRHLKLDLLPRGERCMLRHLPLNGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHLCLRGRNEVVMLRRLDEPNKLRALRILNGSCLNY-------------------------------------------------DALYGMPHNDGQKPSWPTPSQIESLRDLNYCPSV 187
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: A0A7S3ZG35_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZG35_9EUKA)

HSP 1 Score: 154 bits (390), Expect = 4.050e-39
Identity = 98/301 (32.56%), Postives = 132/301 (43.85%), Query Frame = 1 
Query:   82 VIIKGLAKRLDPNLWNTRYLAERCGTVMYHNFRRFCLAEKD-PGGAFVAIPEVEKAWSSMRLCDYVRYLDKRAEARRTLAIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPCVEDGGSKDNVGGDGGDPVGGISEGNGDVGGINAGMTRREEGGXXXXXXXVEQDPCMEFTSFDGKPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMMDILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSG 981
            VIIKGL +RL   LWNT YL ++ G +MYH FRR+CL +     G F    E EK W SM + DY RYLD R +                                                                      +SE                           EQ P + +    G+P+ V++ +E +YL D+    Y PE   ++ +    D+LPGG  C ++Y+    RP +GPNLYI+PPG++T FH+DG+GTVDSGH CL GRN V+MLR L   NK  A+ +L G
Sbjct:   18 VIIKGLGRRLSHELWNTPYLFQKLGPMMYHRFRRYCLVDSSHTQGGFEKRYE-EKDWLSMTIGDYQRYLDAREKM---------------------------------------------------------------------LSE------------------------APKEQPPMLIYDCV-GRPQEVDVNRELIYLLDLPAQSYTPELMVDMRKRMPFDLLPGGENCLLRYVSTNGRPQMGPNLYISPPGTYTWFHEDGHGTVDSGHLCLQGRNEVVMLRGLCNSNKEVAIDVLRG 223
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: A0A448ZRZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 7.910e-35
Identity = 82/217 (37.79%), Postives = 113/217 (52.07%), Query Frame = 1 
Query:  598 VEQDPCMEFTSFDGKPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMMD-ILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSGDLTTSDGSGVDGGGEGSRPAXXXXXXXXVRGEGEGGAVKGAVRRGVVLDGGSGEDMLYRLPHGPG--RKPPWPSEAAIDLLREASCFG 1239
             + +P   F  + GK  T+ +   ++Y+ D+D++R +P   +N    F +  +LPGGS C M  +  E+RPF+GPNLY+TPP S+THFHQDG+GTVDSGH C+ G N V+MLRRL E +K+ AL ILSG  T  D S  DG                                            LY +PHG G  +KPPWP++   D+L +    G
Sbjct:  602 AQDEPQFTFCDYQGKTHTIGVRTSALYMIDVDMSRLVPLLNDNFLESFELPAVLPGGSHCMMNSVTPEARPFMGPNLYVTPPASFTHFHQDGHGTVDSGHLCISGYNEVVMLRRLTERHKKHALWILSGSRT--DDSHFDG--------------------------------------------LYSMPHGDGLGKKPPWPTK---DMLEDCRKMG 769
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: A0A7S4EEL1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL1_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.990e-33
Identity = 80/215 (37.21%), Postives = 107/215 (49.77%), Query Frame = 1 
Query:  604 QDPCMEFTSFDGKPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMMD-ILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSGDLTTSDGSGVDGGGEGSRPAXXXXXXXXVRGEGEGGAVKGAVRRGVVLDGGSGEDMLYRLPHGPG--RKPPWPSEAAIDLLREASCFG 1239
            ++P   F    GK  T+ +   ++Y+ D D+ R  P    N  + F +  +LPGGS C M  +  ++RPF+GPNLY+TPP S+THFHQDG+GTVDSGH C+ G N V+M RRL E +K+ AL ILSG +T                                         G   DG      LY +PHG G  +KPPWPS    D++ E    G
Sbjct:  589 EEPEFTFEDHQGKTHTLGVWTSALYMIDFDMNRLTPLLNENFLKSFELPAVLPGGSHCMMNSVTADARPFMGPNLYVTPPASFTHFHQDGHGTVDSGHLCISGFNEVVMFRRLTERHKKHALWILSGKIT----------------------------------------EGYHFDG------LYSVPHGDGLGKKPPWPSN---DMVEECKTMG 754
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: A0A1E7FK00_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK00_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.390e-31
Identity = 80/216 (37.04%), Postives = 109/216 (50.46%), Query Frame = 1 
Query:  601 EQDPCMEFTSFDGKPRTVNLLKESVYLTDMDLTRYLPECANNLTREF-MMDILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSGDLTTSDGSGVDGGGEGSRPAXXXXXXXXVRGEGEGGAVKGAVRRGVVLDGGSGEDMLYRLPHGPG--RKPPWPSEAAIDLLREASCFG 1239
            +++P   F    GK  ++ +   ++Y+ D+D+ R +P    N    F +  +LPGGS C M  +  E+RPF+GPNLY+TPP S+THFHQDG+GTVDSGH C+ G N VIMLRRL E +KR AL ILSG     +GS  +G                                            LY +PHG G   KP WP+   +D++ E    G
Sbjct:  580 KEEPMFSFEDHVGKTHSLGVWTSALYMIDVDIMRLMPLLNENFLESFELSSVLPGGSHCMMNSVTPEARPFMGPNLYVTPPASFTHFHQDGHGTVDSGHLCISGFNEVIMLRRLTERHKRHALWILSG--KQPNGSHFEG--------------------------------------------LYSVPHGDGLGSKPKWPT---MDMVEECKRMG 746
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: A0A7S1CQ01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ01_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.590e-31
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:  616 MEFTSFDGKPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMMDILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSGDLTTSDGSGV 1011
            M  +   G    ++ L E +YL D+ +   LP  A +L   + ++ LP GS C +Q +P + RPF+GPNLY+TPPGS+T  H+DG GT+DSGHQ + G N VIMLRR+DE  KR A++I++ D   +D  G+
Sbjct:    6 MSISDHRGVAVPLDPLFEVLYLLDLSVPAKLPNLAADLAANYGIETLPAGSNCMLQALPEKGRPFMGPNLYVTPPGSFTWTHEDGRGTLDSGHQTITGYNEVIMLRRMDEVGKRAAMRIMAADDALADTYGL 137
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: K0SGJ8_THAOC (C2H2-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGJ8_THAOC)

HSP 1 Score: 137 bits (344), Expect = 4.070e-31
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 1 
Query:  622 FTSFDG--KPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMM-DILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSG 981
            FT  DG  + +TV + ++++YL D+D+ + LP+  ++L   FM+  ILPGGS C M  +    RPF+GPNLYITPP S+THFHQDG+GTVDSGH CL G N V+MLRRL E +K  AL++L+G
Sbjct:  836 FTFVDGNDETKTVKVDEDALYLLDVDMVKLLPQSFDDLKNNFMLPSILPGGSHCMMNALNVNGRPFMGPNLYITPPASFTHFHQDGHGTVDSGHLCLSGYNEVVMLRRLTERHKYHALRLLTG 958
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BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Match: A0A7S3Q867_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q867_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.180e-30
Identity = 77/198 (38.89%), Postives = 100/198 (50.51%), Query Frame = 1 
Query:  646 RTVNLLKESVYLTDMDLTRYLPECANNLTREFMMD-ILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQCLVGRNRVIMLRRLDEDNKRRALKILSGDLTTSDGSGVDGGGEGSRPAXXXXXXXXVRGEGEGGAVKGAVRRGVVLDGGSGEDMLYRLPHGPGRKPPWPSEAAIDLLREASCF 1236
            RT +  ++ +YL DMDL R LPE  N+  + F +   LPGG  C M  +    RPF+GPNLY+TPPGS+THFHQDG+GTVDSGH C+ G N VIMLRR+ ED+KR+AL +L                                            ++ +  D       LY LPH  G+KP WP   AI    E + +
Sbjct:  490 RTFDPRRDYLYLLDMDLKRTLPESHNDFLKNFRLPKCLPGGDFCMMNSVNDLGRPFMGPNLYVTPPGSFTHFHQDGHGTVDSGHMCIDGYNEVIMLRRMSEDHKRQALHLLH--------------------------------------YNDRRQKNIHYD------ALYGLPHHDGKKPLWPDHEAIKNCDELNYY 643
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20216.5722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LCL4_ECTSI7.260e-8846.44ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A7S2SQY1_9STRA6.230e-5533.99Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DKI0_9STRA1.380e-4339.90Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S3ZG35_9EUKA4.050e-3932.56Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A448ZRZ6_9STRA7.910e-3537.79Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EEL1_9STRA2.990e-3337.21Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FK00_9STRA1.390e-3137.04Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1CQ01_9STRA2.590e-3144.70Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
K0SGJ8_THAOC4.070e-3153.66C2H2-type domain-containing protein n=1 Tax=Thalas... [more]
A0A7S3Q867_9STRA1.180e-3038.89Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20216contigH-elongata_contig20216:983..6501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.3
Seed ortholog evalue8.8e-80
Seed eggNOG ortholog2880.D8LCL4
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons7
Model size1254
Cds size1254
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930137.5431988-CDS-H-elongata_contig20216:982..11461622930137.5431988-CDS-H-elongata_contig20216:982..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 983..1146 +
1691679295.2868156-CDS-H-elongata_contig20216:982..11461691679295.2868156-CDS-H-elongata_contig20216:982..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 983..1146 +
1622930137.5546157-CDS-H-elongata_contig20216:2069..21831622930137.5546157-CDS-H-elongata_contig20216:2069..2183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 2070..2183 +
1691679295.2963805-CDS-H-elongata_contig20216:2069..21831691679295.2963805-CDS-H-elongata_contig20216:2069..2183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 2070..2183 +
1622930137.568204-CDS-H-elongata_contig20216:2793..29681622930137.568204-CDS-H-elongata_contig20216:2793..2968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 2794..2968 +
1691679295.307322-CDS-H-elongata_contig20216:2793..29681691679295.307322-CDS-H-elongata_contig20216:2793..2968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 2794..2968 +
1622930137.581707-CDS-H-elongata_contig20216:3205..34531622930137.581707-CDS-H-elongata_contig20216:3205..3453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 3206..3453 +
1691679295.3187745-CDS-H-elongata_contig20216:3205..34531691679295.3187745-CDS-H-elongata_contig20216:3205..3453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 3206..3453 +
1622930137.5950177-CDS-H-elongata_contig20216:4669..48131622930137.5950177-CDS-H-elongata_contig20216:4669..4813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 4670..4813 +
1691679295.3280952-CDS-H-elongata_contig20216:4669..48131691679295.3280952-CDS-H-elongata_contig20216:4669..4813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 4670..4813 +
1622930137.6160038-CDS-H-elongata_contig20216:5696..58391622930137.6160038-CDS-H-elongata_contig20216:5696..5839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 5697..5839 +
1691679295.341793-CDS-H-elongata_contig20216:5696..58391691679295.341793-CDS-H-elongata_contig20216:5696..5839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 5697..5839 +
1622930137.6287086-CDS-H-elongata_contig20216:6235..65011622930137.6287086-CDS-H-elongata_contig20216:6235..6501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 6236..6501 +
1691679295.3637047-CDS-H-elongata_contig20216:6235..65011691679295.3637047-CDS-H-elongata_contig20216:6235..6501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20216 6236..6501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20216.5722.1prot_H-elongata_contig20216.5722.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20216 983..6501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20216.5722.1

>prot_H-elongata_contig20216.5722.1 ID=prot_H-elongata_contig20216.5722.1|Name=mRNA_H-elongata_contig20216.5722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=418bp
MDVCQRSRLDPLDEAYVLDLFECPDVTVIIKGLAKRLDPNLWNTRYLAER
CGTVMYHNFRRFCLAEKDPGGAFVAIPEVEKAWSSMRLCDYVRYLDKRAE
ARRTLAIAAATTAAASPSPTSPTMASSSTSSSSAVASSTKRRSSSSKTPC
VEDGGSKDNVGGDGGDPVGGISEGNGDVGGINAGMTRREEGGEGGGGGGV
EQDPCMEFTSFDGKPRTVNLLKESVYLTDMDLTRYLPECANNLTREFMMD
ILPGGSTCAMQYMPRESRPFLGPNLYITPPGSWTHFHQDGNGTVDSGHQC
LVGRNRVIMLRRLDEDNKRRALKILSGDLTTSDGSGVDGGGEGSRPAAAA
AAAAGVRGEGEGGAVKGAVRRGVVLDGGSGEDMLYRLPHGPGRKPPWPSE
AAIDLLREASCFGSLCL*
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mRNA from alignment at H-elongata_contig20216:983..6501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20216.5722.1 ID=mRNA_H-elongata_contig20216.5722.1|Name=mRNA_H-elongata_contig20216.5722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5519bp|location=Sequence derived from alignment at H-elongata_contig20216:983..6501+ (Himanthalia elongata Himel1 dioecious)
ATGGATGTGTGCCAACGGAGCAGACTGGACCCTCTGGATGAAGCTTACGT
GCTCGACCTGTTTGAGTGCCCGGATGTGACTGTGATCATCAAAGGACTGG
CAAAACGCTTGGACCCGAACTTGTGGAACACCCGCTACCTCGCCGAACGA
TGCGGGACTGTGATGTGAGAGAGCCGCTTCCAACCCCTCTCCCCCTCTCC
TAAGTGGTGCATGGTTTTTTATTTTTTGCCTCTAGTTGCATAAATAGTAT
AGTACTGTATTATAGTATGATAATATTTCATGTACTCTGATGTACTTGAA
TGCAGTATGGAATGGTAATAGTGTAGTGGAGTGTTTACTAGAGATCGTAC
GTTCACTTGCAACGTGCAGCAGTTTTCCTTCCCTTGCGCTGTCTTTCTGA
TTGGCTGCCTAATTCATATTTTGATCTTACATTGGTCCTTTAAGATTTTA
TAGAAGAATATTCACATTTCATATCAAAATATTCTAGGGAGTGATTCTAA
TTTTTTTTTAAATAAAAATAATATGAGAGGGTGTAATAAAAGCTGCGAAT
GTACGGTAAAAGCCGCTTTTTAAATGCTCATGATGGTAATCTCTCCAACA
CGCCATCTGCCCGTTAAATAATTATTACTATAAAATAGTATCTCCCACCT
GCCCGTAACATTACTCTTTCCCACAAAACATCTGCCAGTTACATTTCCCC
TCCAACAAAACATCTCTTGTTTACCCCCCCAAAAAACAAGAAAAACTAAC
ACTAAATAGTTATAGTAGTTACCGTAATCATTCATTACTATAATCATTAC
AATAATATCTACCAGGTAGTGTGTACTGTGAATGGCTGTAGAAACACCAC
CACGGATTGGCAAGCGCTTTTTAAAAAGCAAAAAAAGACAAATCAGAAAA
CGTGAAATTCCTTTTTATCAAGCATATTCAACTTTTTCTTCTTTTCTCTT
TTTTACTCGTTTTAGTCGTTTTACGTATTTTGGAATTGTTTCCAGTCTCT
CGACCCTGTAGGTTTTTGCCCCCGACACGCCTTCCTCTGTCGTTGAATGC
CGTTGTCCCCTCCGTCCGATGGGCCGGATCCTGGCAGGTACCACAACTTC
AGGCGGTTTTGTTTGGCCGAGAAGGATCCCGGGGGCGCCTTCGTGGCCAT
CCCTGAAGTAGAGAAGGCTTGGTCCTCAATGCGACTTTGTGACTACGTCC
GGTGAGAGAGCTGACCCTTCCTTGGGGTTTCCTGGATGGTTCCACTCTAG
GATCGATCGTCGTTGGGTGTGCTTGTTTTAACGAGTTAACAAAGACACAA
CTACTGGTAGGGGGAAACAACTGCTGTGTTTTTCATTGCCTGTGTGTGTT
TTTGTGATTGGTGATTAGGGTTGCGGGTACTTGTTTTCCCTATATATATA
TAGACTACTCTGTACCAGTAATATTCGTCGAGTTCCAAGCAAGTAAAGCT
ATGTAGTCTGTGTTTAACCCCTATGGAACTCGGTCTGTTTTTTTACATAC
TAAATTCAATAGAAAACTTGAAATCCAGTTCCAGAAGGGTTAACGTTGAT
ATTCCATTATTAATTCTTGTGATAGTGTTATGTTTGTGTAACCAGCGGCT
AGGCTTGGCTTGGCTTGGCTTTGCGTGCTTGTTCATTTTCCCCCTCTACT
TGCAAAAATAAAAAGAAACGTTCAGATCGAGACTCTACTCTATATCACAT
CTCGAAGAGGATTGAAATCAAATCTCAAAAGAGGATCGAAATCAAATATC
GAAAGAGGATCGAAATCAAATCTCAAGAGAGGATCGATATTAATATCAAC
ATCGAAATCAGGTATCTTGACAAGAGAGCAGAAGCGCGGAGGACGCTAGC
TATAGCAGCCGCGACCACCGCCGCGGCGAGCCCATCTCCCACATCGCCCA
CGATGGCATCATCCTCAACGTCGTCATCGTCAGCAGTGGCATCATCGACT
AAGCGACGCAGCAGCAGCAGCAAGACACCTTGCGTTGTCGGGGTGCCGTT
GCAAGCATCGTCACCCAGGGAAACCCTTCGCGCTGTTTCTACGGGTGGGG
CGTCGGCAGGTCCGATGGGGGTCGCCGTGCCAACGACGAATCCGTTGAGG
GCTGGGACCCGACGAGCGTCTGTCGCCGATGCTGCTGGTGATGCTGGTGA
GGATGCGAACGACATCACCAAGGGTTTAAAACATGCCGATGGCGGCGGTG
AGGACATGGCGGAGAAGAATGAGGAGGATGGCGGTTCTAAGGATAACGTC
GGAGGTGATGGTGGAGACCCCGTCGGCGGGATTTCGGAGGGAAACGGGGA
TGTCGGAGGCATAAATGCAGGAATGACGAGGCGTGAAGAGGGAGGGGAGG
GGGGAGGAGGAGGAGGAGTGGAGCAGGATCCGTGCATGGAGTTCACAAGC
TTCGACGGAAAGCCCCGGACCGTGAACCTCTTGAAGGAATCGGTGTATCT
GACTGACATGGACCTGACCAGGTTTGCCCAGGAGGGAAGGCGTTATCGAC
TTTGGAGTGCCCGAGGAAGGGGGGGAGGGTGCGGTGGGGGGCTTAGGGAA
GGGGTGTTTTAAGTTTCTTCATCCGCTCTCGTAGGATTGCGATGTCTCTT
TGGTGAAATGATACGAAGCAGCGGCGTCGGGTTTTCGACCACCATATAGT
GTGTTTTTGAGCCGTCTTTTCTTCGTTGCTGACTGGCTTCAAGCCATGAG
GAGAACGGTTCGATTTCCCCTCCGTTGCGCGGTGGCTGAAGAGAGATATT
TCTCGTGCGTTTCAAAATATGTTTCTTTTTACTTATTTGGCGTGTACTTA
CCTTTATTTGGCACATGACGCCACGAGTGTTTTGTCTTAACAATAACACG
CTTCACCATGAGATCGAATCGAAATCGTTGTGGAAACCGCCCCCAAAACG
GCCGAAGTCCCTTTTTTGCCCTGGAATACTGTAAAAATAAAAATCTTTGG
TTTCCTTATTATAAATTATATTAAAATAATAATAATTTAAGCCAAATTCC
CTCCGCGCGCCCTCTGGCCCCCCCCCCCCCCCCCCCCAACAAAAAAAAAA
AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAATAAAN
NNNNNNNNNCCCTCCCCCCCCCCCAAAATAAATAAAATATAAAAAGCGAA
ATTAAATAAACGAAACAAGTGTACGGGATAATAATGGGATCCCCGACATT
ATACCTTTGACCCCATGTACTTACACTTGGGAAACACGATCTATCACGTG
TGACAATTTTGTGCTCAAAGGTAGTAATGTACTCATTCAAACCTGACGAT
ATGTTCGTCTCCTTGGACTGCACCTCTCACGGTTGCTAAGAAGGTATATT
ATGGTGGATGTTCGGACGGTTGGAATGAGTTCGTGTTTTAAAACACACAC
AGATACATAAAAACGTGTTTTTTTACTTTTTAACGTGAGCCTTGCACCTA
AAATTCAGTCATGAAGACTTTTAAATGAAACCAAACCCACACCATGGGGA
AAAATATACATATTTTTAACTCCTACGGAATTTGATCTATTTTTTTCATG
CTAAATTGAACGTAAAACTTGAAATCCAGTTCCAGAAGGGTTAAAATGGG
CAACAACTCTTACCTTCCCGTATTAAAAAGAAAAAAAAATCCAATTATTA
GCCCTCCATCCCCCTGTTTCCCCCTTGGCCCGTCCAGGTACCTCCCCGAG
TGCGCAAACAACCTTACCCGGGAGTTCATGATGGACATTCTACCCGGCGG
GTCAACATGCGCGATGCAGTACATGCCCCGCGAGAGCAGACCCTTCCTCG
GACCCAACCTTTACATCACGCCTCCTGGAAGGTGCGCGATCTTGCGCGGT
GGAAATTTTACCGCTTTCCCCATTCTCCTAGAAGATGCGGTGCAGTGGGA
CTTTTACCGGTTTGTCGAAGCGTTGGGGAGGCGAGGGCCTTCTTGGTTCT
TGTTGCTGTATATTTTGTTGCGGTTCGGCGCGGTAGAAATTCGACCGCTT
CGTAAAAACGGTTGGGTTTTCTATTTTTTATCGGCCGCTTTTTTTTTGCT
ACTGTATAATATAGGGTTTCCACGTGTTATAAGAAATGTATCAAAATAAT
GCACTAAAGTGAAGGAACCTAAACAAGTCCGCCCCTGGCAAGACTAATTT
AGGCTCCTTTTCACTTTAGTGCATTATTTTCATACACGTGGAAACCCTAT
ATAATAGAAGCCTTGATTACACGTTTTTAGTATACAATGTACTTTACCCA
TTGCGATATAGTTTGGATTTTAAAGTAAGAAAAAGTATAATATAATTTCG
ATGAAATAATTCGGGCAGGCGAGGGGTCGCAAGGGGTCAGTCTTGATCAT
GGAAGGAAACGGAGAATAGATAAACCCAACAGAGCAAAAAAAAACTTGCG
TGAAGTACGGTGAAATTTTTACCGCTTCGTAAAAAAAACCGTCTATAATA
CCAAACTATTTTTATTTAAAAAAAAACTTGAACTCATTAGAACCCTTAGA
ACATCCGCGCCTTCTTAGCACCATGAGAGGTGTAGTCCAGGGGACCAACT
ATCGTCAGGTTCTAATGTGGACATTACTAATTTTCTCTCTTTCCCTATCC
CTACTGGGCGTGCCTGGCCTGCTTCATAGCTCCCTGACTATATACCCTCA
CATCCCCGTCCCCCGTCTCATGCCACCCATTTTTCCGTCCGACTGCACAC
ATTTGGAAATCCAGCTGGACACACTTCCACCAAGACGGAAACGGCACGGT
GGACTCGGGCCACCAGTGCCTGGTCGGACGAAACCGCGTTATCATGCTTC
GACGTCTCGACGAGGACAACAAGCGCCGGGCCCTCAAGATCCTCTCGGGC
GATCTGAGTGACAGCAACAGTAGCATCAGCAACGACGAACACGCCGGGGG
CCACAGCGTCGGCGACGAAAGCAACGATGGTAAAGGCGGAAGCAACGCCG
AGAGCAATGGCAGCAGCAGCAGCAGCGGTGGTGGTGGTCTAGACTCTCGT
GCGGAAGCTGGGGTTGGCACGCCGGGCTCGAAAGGCGGAGGTGGCGGTAG
CGAGGAGGCAGGCCCGGCGGTAGCGGAAGTGGGGGCAAGGGTAGGAGGTT
GCGGCAGACATAGGGATCAAAGCAGGGGGCGAGCCTCAGACCGAGATCGA
CCACGAGGCCGAGTGGTTCTGATAGCCAGGGGGGAGGGCTCGGCAGCCGA
GGTGACGGCGACGGAAGAGACCACAGCAATGGCGCCTCGCGACGAGATCG
TAGCCACTTCCGACGGCTCCGGTGTTGATGGGGGCGGGGAAGGGTCAAGA
CCTGCTGCTGCTGCTGCTGCTGCTGCTGGGGTTCGAGGGGAGGGGGAAGG
AGGGGCTGTAAAAGGCGCCGTTCGCCGCGGTGTGGTGTTGGACGGAGGAA
GCGGGGAGGATATGCTGTACAGGCTGCCGCACGGCCCGGGGCGCAAGCCG
CCCTGGCCGTCCGAGGCAGCTATCGATCTCCTGAGAGAGGCGAGTTGCTT
CGGGTCTCTGTGTTTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig20216:983..6501+

>mRNA_H-elongata_contig20216.5722.1 ID=mRNA_H-elongata_contig20216.5722.1|Name=mRNA_H-elongata_contig20216.5722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2508bp|location=Sequence derived from alignment at H-elongata_contig20216:983..6501+ (Himanthalia elongata Himel1 dioecious)
ATGGATGTGTGCCAACGGAGCAGACTGGACCCTCTGGATGAAGCTTACGT
GCTCGACCTGTTTGAGTGCCCGGATGTGACTGTGATCATCAAAGGACTGG
CAAAACGCTTGGACCCGAACTTGTGGAACACCCGCTACCTCGCCGAACGA
TGCGGGACTGTGATATGGATGTGTGCCAACGGAGCAGACTGGACCCTCTG
GATGAAGCTTACGTGCTCGACCTGTTTGAGTGCCCGGATGTGACTGTGAT
CATCAAAGGACTGGCAAAACGCTTGGACCCGAACTTGTGGAACACCCGCT
ACCTCGCCGAACGATGCGGGACTGTGATGTACCACAACTTCAGGCGGTTT
TGTTTGGCCGAGAAGGATCCCGGGGGCGCCTTCGTGGCCATCCCTGAAGT
AGAGAAGGCTTGGTCCTCAATGCGACTTTGTGACTACGTCCGGTACCACA
ACTTCAGGCGGTTTTGTTTGGCCGAGAAGGATCCCGGGGGCGCCTTCGTG
GCCATCCCTGAAGTAGAGAAGGCTTGGTCCTCAATGCGACTTTGTGACTA
CGTCCGGTATCTTGACAAGAGAGCAGAAGCGCGGAGGACGCTAGCTATAG
CAGCCGCGACCACCGCCGCGGCGAGCCCATCTCCCACATCGCCCACGATG
GCATCATCCTCAACGTCGTCATCGTCAGCAGTGGCATCATCGACTAAGCG
ACGCAGCAGCAGCAGCAAGACACCTTGCGTTGTATCTTGACAAGAGAGCA
GAAGCGCGGAGGACGCTAGCTATAGCAGCCGCGACCACCGCCGCGGCGAG
CCCATCTCCCACATCGCCCACGATGGCATCATCCTCAACGTCGTCATCGT
CAGCAGTGGCATCATCGACTAAGCGACGCAGCAGCAGCAGCAAGACACCT
TGCGTTGAGGATGGCGGTTCTAAGGATAACGTCGGAGGTGATGGTGGAGA
CCCCGTCGGCGGGATTTCGGAGGGAAACGGGGATGTCGGAGGCATAAATG
CAGGAATGACGAGGCGTGAAGAGGGAGGGGAGGGGGGAGGAGGAGGAGGA
GTGGAGCAGGATCCGTGCATGGAGTTCACAAGCTTCGACGGAAAGCCCCG
GACCGTGAACCTCTTGAAGGAATCGGTGTATCTGACTGACATGGACCTGA
CCAGGAGGATGGCGGTTCTAAGGATAACGTCGGAGGTGATGGTGGAGACC
CCGTCGGCGGGATTTCGGAGGGAAACGGGGATGTCGGAGGCATAAATGCA
GGAATGACGAGGCGTGAAGAGGGAGGGGAGGGGGGAGGAGGAGGAGGAGT
GGAGCAGGATCCGTGCATGGAGTTCACAAGCTTCGACGGAAAGCCCCGGA
CCGTGAACCTCTTGAAGGAATCGGTGTATCTGACTGACATGGACCTGACC
AGGTACCTCCCCGAGTGCGCAAACAACCTTACCCGGGAGTTCATGATGGA
CATTCTACCCGGCGGGTCAACATGCGCGATGCAGTACATGCCCCGCGAGA
GCAGACCCTTCCTCGGACCCAACCTTTACATCACGCCTCCTGGAAGGTAC
CTCCCCGAGTGCGCAAACAACCTTACCCGGGAGTTCATGATGGACATTCT
ACCCGGCGGGTCAACATGCGCGATGCAGTACATGCCCCGCGAGAGCAGAC
CCTTCCTCGGACCCAACCTTTACATCACGCCTCCTGGAAGCTGGACACAC
TTCCACCAAGACGGAAACGGCACGGTGGACTCGGGCCACCAGTGCCTGGT
CGGACGAAACCGCGTTATCATGCTTCGACGTCTCGACGAGGACAACAAGC
GCCGGGCCCTCAAGATCCTCTCGGGCGATCTGACTGGACACACTTCCACC
AAGACGGAAACGGCACGGTGGACTCGGGCCACCAGTGCCTGGTCGGACGA
AACCGCGTTATCATGCTTCGACGTCTCGACGAGGACAACAAGCGCCGGGC
CCTCAAGATCCTCTCGGGCGATCTGACCACTTCCGACGGCTCCGGTGTTG
ATGGGGGCGGGGAAGGGTCAAGACCTGCTGCTGCTGCTGCTGCTGCTGCT
GGGGTTCGAGGGGAGGGGGAAGGAGGGGCTGTAAAAGGCGCCGTTCGCCG
CGGTGTGGTGTTGGACGGAGGAAGCGGGGAGGATATGCTGTACAGGCTGC
CGCACGGCCCGGGGCGCAAGCCGCCCTGGCCGTCCGAGGCAGCTATCGAT
CTCCTGAGAGAGGCGAGTTGCTTCGGGTCTCTGTGTTTATAGCCACTTCC
GACGGCTCCGGTGTTGATGGGGGCGGGGAAGGGTCAAGACCTGCTGCTGC
TGCTGCTGCTGCTGCTGGGGTTCGAGGGGAGGGGGAAGGAGGGGCTGTAA
AAGGCGCCGTTCGCCGCGGTGTGGTGTTGGACGGAGGAAGCGGGGAGGAT
ATGCTGTACAGGCTGCCGCACGGCCCGGGGCGCAAGCCGCCCTGGCCGTC
CGAGGCAGCTATCGATCTCCTGAGAGAGGCGAGTTGCTTCGGGTCTCTGT
GTTTATAG
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