mRNA_H-elongata_contig20184.5706.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20184.5706.1
Unique NamemRNA_H-elongata_contig20184.5706.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20184.5706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20184contigH-elongata_contig20184:2756..3354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size161
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.0130403-CDS-H-elongata_contig20184:2755..28321622930136.0130403-CDS-H-elongata_contig20184:2755..2832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20184 2756..2832 -
1691679294.6602628-CDS-H-elongata_contig20184:2755..28321691679294.6602628-CDS-H-elongata_contig20184:2755..2832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20184 2756..2832 -
1622930136.0342999-CDS-H-elongata_contig20184:3272..33541622930136.0342999-CDS-H-elongata_contig20184:3272..3354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20184 3273..3354 -
1691679294.6698468-CDS-H-elongata_contig20184:3272..33541691679294.6698468-CDS-H-elongata_contig20184:3272..3354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20184 3273..3354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20184.5706.1prot_H-elongata_contig20184.5706.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20184 2756..3354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20184.5706.1

>prot_H-elongata_contig20184.5706.1 ID=prot_H-elongata_contig20184.5706.1|Name=mRNA_H-elongata_contig20184.5706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MRQAIVPKRPRHELGDRITPTDGQTPMEEQTIPAPMMAPHLRRSNGRTKR
KRW
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mRNA from alignment at H-elongata_contig20184:2756..3354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20184.5706.1 ID=mRNA_H-elongata_contig20184.5706.1|Name=mRNA_H-elongata_contig20184.5706.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=599bp|location=Sequence derived from alignment at H-elongata_contig20184:2756..3354- (Himanthalia elongata Himel1 dioecious)
ATGAGACAGGCGATCGTACCCAAGAGGCCAAGGCACGAGCTCGGTGACCG
TATCACACCCACTGATGGGCAGACTCCAATGGGTGAGAAATACATTCATG
TAGATAGATTAATGAGGCGTTGAACTATTGTAGTAGTAGGCTGCGGATTA
TCGATCCAAGTTGAAGTGGCTGCGTTCGTGGTTAGGTTCGATGCTCCATC
GGACACATTTTCCTGTCGAAGTGGCGGTGGGGGTTCTATACAAAGAGGCA
ACACCTACTATTTTTCTGTGAGGTTTCTTTGCCTCTCTATGAAATGTGTG
AAATCTGCTGAGGTTGACTTATTAATTAACACCATCAATCAGATCGACTC
TGCTGGCAAATCCCTCGAGGTTTTCCCCCCATTTCGGTAGGGTATCTATG
ATGGAGACACACAGGAGAATCCTAAAGATGAAAAACGGTCCCACACACGC
TTCTAGGCGTGTGTGTAGAAATCAACTCTTGAACGTGTTACGCTGGTTTT
GGTTTAATTTTTATCCTTCGAGAGGAGCAGACAATCCCGGCCCCGATGAT
GGCGCCGCACCTCAGGCGGTCAAATGGACGAACAAAAAGGAAGAGATGG
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Coding sequence (CDS) from alignment at H-elongata_contig20184:2756..3354-

>mRNA_H-elongata_contig20184.5706.1 ID=mRNA_H-elongata_contig20184.5706.1|Name=mRNA_H-elongata_contig20184.5706.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig20184:2756..3354- (Himanthalia elongata Himel1 dioecious)
ATGAGACAGGCGATCGTACCCAAGAGGCCAAGGCACGAGCTCGGTGACCG
TATCACACCCACTGATGGGCAGACTCCAATGGATGAGACAGGCGATCGTA
CCCAAGAGGCCAAGGCACGAGCTCGGTGACCGTATCACACCCACTGATGG
GCAGACTCCAATGGAGGAGCAGACAATCCCGGCCCCGATGATGGCGCCGC
ACCTCAGGCGGTCAAATGGACGAACAAAAAGGAAGAGATGGAGGAGCAGA
CAATCCCGGCCCCGATGATGGCGCCGCACCTCAGGCGGTCAAATGGACGA
ACAAAAAGGAAGAGATGG
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