mRNA_H-elongata_contig2018.5702.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2018.5702.1
Unique NamemRNA_H-elongata_contig2018.5702.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig2018.5702.1 vs. uniprot
Match: UPI001E1E0CD9 (uncharacterized protein LOC123530587 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0CD9)

HSP 1 Score: 53.1 bits (126), Expect = 2.830e-5
Identity = 40/136 (29.41%), Postives = 62/136 (45.59%), Query Frame = 1 
Query:   34 EEMGLIQRSLEDHYMNVKLSRRVYMAAKERATLNPDDLLCIAIDGSDQSSYGAPYFRQESKESCKGWKM-RLKLIGALVSGRMCMFYTLGYN-WESGSNLTVQVLHSTLMRPSAVLPPGKKLPRSLHLQMDNCSRD 435
            E+  +I R    H       R+ Y A ++ +  +P   L + IDG DQS    P+    + +     ++ +  L G L  G       +  N +    NLT+ VL   L++ +     GKKLPR L+LQ DNC R+
Sbjct:  316 EKKEIILREKSLHNDRQMFERKYYYAKRDASRKHPQQFLSLIIDGMDQSKTNLPHIVGRTPKIINPAELLKTHLTGVLDHGHQKFTIYVDVNQYPHDPNLTMNVLLKKLIQLAK--ENGKKLPRVLYLQADNCWRE 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2018.5702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E1E0CD92.830e-529.41uncharacterized protein LOC123530587 n=1 Tax=Merce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2018contigH-elongata_contig2018:13177..14628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score79.0
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog7739.XP_002606193.1
KEGG koko:K19983
EggNOG OGs2CXPP@1,2RYXE@2759,3A0MY@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size456
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2018.5702.1prot_H-elongata_contig2018.5702.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2018 13178..14628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930135.4332232-CDS-H-elongata_contig2018:13177..131991622930135.4332232-CDS-H-elongata_contig2018:13177..13199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2018 13178..13199 -
1691679294.3767927-CDS-H-elongata_contig2018:13177..131991691679294.3767927-CDS-H-elongata_contig2018:13177..13199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2018 13178..13199 -
1622930135.4568598-CDS-H-elongata_contig2018:13699..138141622930135.4568598-CDS-H-elongata_contig2018:13699..13814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2018 13700..13814 -
1691679294.387053-CDS-H-elongata_contig2018:13699..138141691679294.387053-CDS-H-elongata_contig2018:13699..13814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2018 13700..13814 -
1622930135.4706028-CDS-H-elongata_contig2018:14004..142421622930135.4706028-CDS-H-elongata_contig2018:14004..14242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2018 14005..14242 -
1691679294.3952653-CDS-H-elongata_contig2018:14004..142421691679294.3952653-CDS-H-elongata_contig2018:14004..14242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2018 14005..14242 -
1622930135.4828622-CDS-H-elongata_contig2018:14550..146281622930135.4828622-CDS-H-elongata_contig2018:14550..14628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2018 14551..14628 -
1691679294.410219-CDS-H-elongata_contig2018:14550..146281691679294.410219-CDS-H-elongata_contig2018:14550..14628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2018 14551..14628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2018.5702.1

>prot_H-elongata_contig2018.5702.1 ID=prot_H-elongata_contig2018.5702.1|Name=mRNA_H-elongata_contig2018.5702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
QRRNGGPGWKTEEMGLIQRSLEDHYMNVKLSRRVYMAAKERATLNPDDLL
CIAIDGSDQSSYGAPYFRQESKESCKGWKMRLKLIGALVSGRMCMFYTLG
YNWESGSNLTVQVLHSTLMRPSAVLPPGKKLPRSLHLQMDNCSRDRPGIL
Q
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mRNA from alignment at H-elongata_contig2018:13177..14628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2018.5702.1 ID=mRNA_H-elongata_contig2018.5702.1|Name=mRNA_H-elongata_contig2018.5702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1452bp|location=Sequence derived from alignment at H-elongata_contig2018:13177..14628- (Himanthalia elongata Himel1 dioecious)
CAACGGAGAAATGGAGGACCGGGGTGGAAGACAGAAGAGATGGGTCTGAT
CCAGAGGAGCTTGGAAGATCATTACATGGTAAGCATTAGGCTTGTACATA
CGCGGAGTCCCCAATTTGTTTTTTGTGACGAACGCTTAGTTATCCACAGT
AGTACTAACTTTTTATTTGCTCCTAAAACAGATTAGCACTACTGATTGAT
TTCTTCATTTCTAGTGGCCATGTTTTAACATGGGTTCAGGTATGTGACCT
CCCTCATGAAGGAAATGTAGTACACATCTAACCAGTATTTATTATACACA
AACTCAACTTATAATGCGTGATGCCGCTCCAACCGAGGCATATTTACTTT
TTTTCTCTCGCTCGTCCTGATTTTCCATTGTCCTAGAATGTGAAATTATC
TCGAAGGGTATATATGGCTGCAAAGGAAAGGGCGACGTTGAACCCCGACG
ATTTGCTCTGTATCGCTATCGACGGCAGCGACCAGTCAAGTTACGGAGCC
CCATATTTCCGACAGGAGTCGAAAGAAAGCTGCAAGGGTTGGAAGATGAG
GCTTAAACTCATCGGAGCTCTCGTTTCAGGGCGGATGTGCATGTTCTACA
CGCTGGGGTACAATTGGGAGTCAGGTGCCTCCCTATAACCTTTGCCGGGA
ATACGTCAGAAACAAGCTGCCTTGACCAGTATGTTTGATAGTTTTTAATC
AAGTCAGGGCGTGATACCTTCGCGCTGATAGAGTTGATACGTCATCTAGT
CGATACCCGCCCTCAAGTCCTCAGCCCTCCTCGCTGCGCGTAAATCTATC
TTTGTCTTTAAAAGGGTCAAACCTCACGGTTCAAGTCCTGCACAGCACAC
TTATGCGACCGTCAGCCGTCCTCCCTCCTGGAAAGAAGCTCCCGCGGTCA
CTTCACCTCCAGATGGACAACTGTTCCCGGTTTGGATTGTATTTTAAGCA
GCGCGTGGATGGCATGTGTATAGGTCATGTATATATAGGTCAAATCTTGT
TTTATCATGTCAAGTAAAACAAAACCATACAATGCCTAATGGTCTATTTC
ACCCTTCCTTGATGCTACGCAGGGAGAACAAGAATCGTATCTTTATCGCG
TACCTACACATGTTGGTTTATCTCGGGGTGTTCGACAAGATCGAGCTCCA
CTTCGGGCTGAAGGGGCACACTCATGACGGTATAACAGGAGAAAAATAGT
GATGATATTCCATCCCGTAAAAGGGATTGTGAGAGGGGTTTTTACTCTTG
AGAAAACTTGTCAATATTGGCTCAAACAGCATGACCAGCAAAGGACATAC
TCGACACGTCATTTTTAGTCAATTTGCTAGACGAAATCAGCGAAATTCGC
GGCGTTTTAAATTATTTTTCCCCGAATCGTATGATGCCCGTTCGTTTACC
GCGCGTTTTGCATTACGGCCGTGAGTCAGAGATCGACCAGGTATTCTCCA
GG
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Coding sequence (CDS) from alignment at H-elongata_contig2018:13177..14628-

>mRNA_H-elongata_contig2018.5702.1 ID=mRNA_H-elongata_contig2018.5702.1|Name=mRNA_H-elongata_contig2018.5702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig2018:13177..14628- (Himanthalia elongata Himel1 dioecious)
CAACGGAGAAATGGAGGACCGGGGTGGAAGACAGAAGAGATGGGTCTGAT
CCAGAGGAGCTTGGAAGATCATTACATGCAACGGAGAAATGGAGGACCGG
GGTGGAAGACAGAAGAGATGGGTCTGATCCAGAGGAGCTTGGAAGATCAT
TACATGAATGTGAAATTATCTCGAAGGGTATATATGGCTGCAAAGGAAAG
GGCGACGTTGAACCCCGACGATTTGCTCTGTATCGCTATCGACGGCAGCG
ACCAGTCAAGTTACGGAGCCCCATATTTCCGACAGGAGTCGAAAGAAAGC
TGCAAGGGTTGGAAGATGAGGCTTAAACTCATCGGAGCTCTCGTTTCAGG
GCGGATGTGCATGTTCTACACGCTGGGGTACAATTGGGAGTCAGAATGTG
AAATTATCTCGAAGGGTATATATGGCTGCAAAGGAAAGGGCGACGTTGAA
CCCCGACGATTTGCTCTGTATCGCTATCGACGGCAGCGACCAGTCAAGTT
ACGGAGCCCCATATTTCCGACAGGAGTCGAAAGAAAGCTGCAAGGGTTGG
AAGATGAGGCTTAAACTCATCGGAGCTCTCGTTTCAGGGCGGATGTGCAT
GTTCTACACGCTGGGGTACAATTGGGAGTCAGGGTCAAACCTCACGGTTC
AAGTCCTGCACAGCACACTTATGCGACCGTCAGCCGTCCTCCCTCCTGGA
AAGAAGCTCCCGCGGTCACTTCACCTCCAGATGGACAACTGTTCCCGGGT
CAAACCTCACGGTTCAAGTCCTGCACAGCACACTTATGCGACCGTCAGCC
GTCCTCCCTCCTGGAAAGAAGCTCCCGCGGTCACTTCACCTCCAGATGGA
CAACTGTTCCCGAGATCGACCAGGTATTCTCCAGAGATCGACCAGGTATT
CTCCAG
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