mRNA_H-elongata_contig20175.5697.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20175.5697.1
Unique NamemRNA_H-elongata_contig20175.5697.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: M2WVW0_GALSU (60S ribosomal protein L14e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WVW0_GALSU)

HSP 1 Score: 63.9 bits (154), Expect = 4.910e-11
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    4 VFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNKVRLVVVPFLSRSIFCLPRETRNIPTLFLIRSLVRYKLADSSGVEKNSSQESK 261
            VFKRFVE+GRV LV+YG H GKL VI+DVVD N+V LV  P        LPR T N  +L L    V+ +    +GV + + +E K
Sbjct:    2 VFKRFVEVGRVVLVTYGEHRGKLGVIVDVVDQNRV-LVDGPQTG-----LPRHTINFKSLALTPFQVKIQHGSRTGVVRKALEEKK 81
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: A0A8C0GLS4_CHEAB (Uncharacterized protein n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0GLS4_CHEAB)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-9
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 QVFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNKVR-----LVVVPFLSRSI 144
            QVFKR+VEIGRVA +S+GPH GKL  I+DV+D N+V      L + P LS SI
Sbjct:    9 QVFKRYVEIGRVAYISFGPHAGKLVAIVDVIDQNRVSSETCSLFLSPVLSSSI 61
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: A0A8J4UBA5_CLAMG (60S ribosomal protein L14 (Fragment) n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8J4UBA5_CLAMG)

HSP 1 Score: 58.9 bits (141), Expect = 3.080e-9
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    4 VFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNK 105
            VFKRFVEIGRVA V++GPHEGKL VI+DV+D N+
Sbjct:    2 VFKRFVEIGRVAYVAFGPHEGKLVVIVDVIDQNR 35
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: A0A498N3B3_LABRO (60S ribosomal protein L14 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498N3B3_LABRO)

HSP 1 Score: 59.7 bits (143), Expect = 4.040e-9
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    4 VFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNK 105
            VFKRFVEIGRVA V++GPHEGKL VIIDV+D N+
Sbjct:   28 VFKRFVEIGRVAFVAFGPHEGKLVVIIDVIDQNR 61
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: A9U2F2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U2F2_PHYPA)

HSP 1 Score: 58.5 bits (140), Expect = 6.100e-9
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    4 VFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNKVRLVVVPFLSRS 141
            VF+RFVEIGRVAL++YGPH GKL VI+DV+D N+  LV  P + R+
Sbjct:    2 VFRRFVEIGRVALINYGPHYGKLVVIVDVIDQNRA-LVDAPDMVRT 46
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: A0A3Q0QXM3_AMPCI (60S ribosomal protein L14 n=2 Tax=Cichlidae TaxID=8113 RepID=A0A3Q0QXM3_AMPCI)

HSP 1 Score: 58.2 bits (139), Expect = 9.880e-9
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QVFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNK 105
            QVFKRFVEIGRVA VS+GPH GKL  I+DV+D N+
Sbjct:    2 QVFKRFVEIGRVAYVSFGPHAGKLVAIVDVIDQNR 36
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: UPI001E3D70B5 (hypothetical protein n=1 Tax=Exiguobacterium aurantiacum TaxID=33987 RepID=UPI001E3D70B5)

HSP 1 Score: 57.4 bits (137), Expect = 1.050e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    4 VFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNK 105
            VFKRFVEIGRVA +++GPHEGKL  I+DV+D N+
Sbjct:    1 VFKRFVEIGRVAFIAFGPHEGKLVAIVDVIDQNR 34
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: A0A3Q2XC30_HAPBU (60S ribosomal protein L14 n=3 Tax=Haplochromini TaxID=319058 RepID=A0A3Q2XC30_HAPBU)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QVFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNK 105
            QVFKRFVEIGRVA VS+GPH GKL  I+DV+D N+
Sbjct:   11 QVFKRFVEIGRVAYVSFGPHAGKLVAIVDVIDQNR 45
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: A0A3Q4IA28_NEOBR (60S ribosomal protein L14 n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4IA28_NEOBR)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QVFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNK 105
            QVFKRFVEIGRVA VS+GPH GKL  I+DV+D N+
Sbjct:   12 QVFKRFVEIGRVAYVSFGPHAGKLVAIVDVIDQNR 46
[Close]
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Match: A0A3P9BXV6_9CICH (60S ribosomal protein L14 n=2 Tax=Maylandia zebra TaxID=106582 RepID=A0A3P9BXV6_9CICH)

HSP 1 Score: 58.2 bits (139), Expect = 1.110e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 QVFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNK 105
            QVFKRFVEIGRVA VS+GPH GKL  I+DV+D N+
Sbjct:   11 QVFKRFVEIGRVAYVSFGPHAGKLVAIVDVIDQNR 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20175.5697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M2WVW0_GALSU4.910e-1147.6760S ribosomal protein L14e n=1 Tax=Galdieria sulph... [more]
A0A8C0GLS4_CHEAB1.040e-958.49Uncharacterized protein n=1 Tax=Chelonoidis abingd... [more]
A0A8J4UBA5_CLAMG3.080e-976.4760S ribosomal protein L14 (Fragment) n=2 Tax=cellu... [more]
A0A498N3B3_LABRO4.040e-979.4160S ribosomal protein L14 n=1 Tax=Labeo rohita Tax... [more]
A9U2F2_PHYPA6.100e-963.04Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A3Q0QXM3_AMPCI9.880e-974.2960S ribosomal protein L14 n=2 Tax=Cichlidae TaxID=... [more]
UPI001E3D70B51.050e-870.59hypothetical protein n=1 Tax=Exiguobacterium auran... [more]
A0A3Q2XC30_HAPBU1.090e-874.2960S ribosomal protein L14 n=3 Tax=Haplochromini Ta... [more]
A0A3Q4IA28_NEOBR1.090e-874.2960S ribosomal protein L14 n=1 Tax=Neolamprologus b... [more]
A0A3P9BXV6_9CICH1.110e-874.2960S ribosomal protein L14 n=2 Tax=Maylandia zebra ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20175contigH-elongata_contig20175:4118..4378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog130081.XP_005704650.1
Preferred nameRPL14
KEGG koko:K02875,ko:K12867
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00177,M00179,M00355
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0016236,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030054,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042273,GO:0042788,GO:0042886,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0060548,GO:0061919,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:0140110,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsCOG2163@1,KOG3421@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.8761332-CDS-H-elongata_contig20175:4117..43781622930134.8761332-CDS-H-elongata_contig20175:4117..4378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20175 4118..4378 +
1691679294.2059917-CDS-H-elongata_contig20175:4117..43781691679294.2059917-CDS-H-elongata_contig20175:4117..4378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20175 4118..4378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20175.5697.1prot_H-elongata_contig20175.5697.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20175 4118..4378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20175.5697.1

>prot_H-elongata_contig20175.5697.1 ID=prot_H-elongata_contig20175.5697.1|Name=mRNA_H-elongata_contig20175.5697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
QVFKRFVEIGRVALVSYGPHEGKLAVIIDVVDSNKVRLVVVPFLSRSIFC
LPRETRNIPTLFLIRSLVRYKLADSSGVEKNSSQESK
back to top

mRNA from alignment at H-elongata_contig20175:4118..4378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20175.5697.1 ID=mRNA_H-elongata_contig20175.5697.1|Name=mRNA_H-elongata_contig20175.5697.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig20175:4118..4378+ (Himanthalia elongata Himel1 dioecious)
CAGGTCTTCAAGCGGTTTGTTGAGATTGGCCGCGTAGCGTTGGTCAGCTA
CGGCCCCCACGAAGGGAAGCTCGCGGTCATCATAGACGTGGTTGACAGCA
ACAAGGTACGCCTCGTCGTGGTTCCGTTCCTTAGTAGGTCCATTTTTTGC
TTGCCCCGCGAGACCCGAAATATACCAACCCTATTTTTAATACGTAGCCT
AGTACGATATAAATTGGCCGATTCGTCTGGAGTCGAGAAAAATAGCAGTC
AGGAAAGCAAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20175:4118..4378+

>mRNA_H-elongata_contig20175.5697.1 ID=mRNA_H-elongata_contig20175.5697.1|Name=mRNA_H-elongata_contig20175.5697.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig20175:4118..4378+ (Himanthalia elongata Himel1 dioecious)
CAGGTCTTCAAGCGGTTTGTTGAGATTGGCCGCGTAGCGTTGGTCAGCTA
CGGCCCCCACGAAGGGAAGCTCGCGGTCATCATAGACGTGGTTGACAGCA
ACAAGGTACGCCTCGTCGTGGTTCCGTTCCTTAGTAGGTCCATTTTTTGC
TTGCCCCGCGAGACCCGAAATATACCAACCCTATTTTTAATACGTAGCCT
AGTACGATATAAATTGGCCGATTCGTCTGGAGTCGAGAAAAATAGCAGTC
AGGAAAGCAAACAGGTCTTCAAGCGGTTTGTTGAGATTGGCCGCGTAGCG
TTGGTCAGCTACGGCCCCCACGAAGGGAAGCTCGCGGTCATCATAGACGT
GGTTGACAGCAACAAGGTACGCCTCGTCGTGGTTCCGTTCCTTAGTAGGT
CCATTTTTTGCTTGCCCCGCGAGACCCGAAATATACCAACCCTATTTTTA
ATACGTAGCCTAGTACGATATAAATTGGCCGATTCGTCTGGAGTCGAGAA
AAATAGCAGTCAGGAAAGCAAA
back to top