mRNA_H-elongata_contig201699.5696.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201699.5696.1
Unique NamemRNA_H-elongata_contig201699.5696.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: D7G8S8_ECTSI (Acetyl-CoA acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S8_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 7.610e-54
Identity = 87/109 (79.82%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASAWEEVR 327
            +VCASGMK+VMLAAQS+SLGHR  MVAGGFESMSN PYYLP+AR GLRLG+G+V+DGIIHDGLWD YNDHHMGICAEKC+  YGI REAQD HA ESY+RAA AWE+ R
Sbjct:  117 KVCASGMKSVMLAAQSLSLGHRGVMVAGGFESMSNVPYYLPQARGGLRLGNGTVVDGIIHDGLWDVYNDHHMGICAEKCSSAYGISREAQDEHATESYQRAALAWEKGR 225
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A6H5KFT0_9PHAE (Thiolase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT0_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.200e-52
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:   19 MKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASAW 315
            MK+VMLAAQS+SLGHR  MVAGGFESMSN PYYLP+AR+GLRLG+G+V+DGIIHDGLWD YNDHHMGICAEKC+  YGI REAQD HA +SY+RAA AW
Sbjct:    1 MKSVMLAAQSLSLGHRGVMVAGGFESMSNVPYYLPQARSGLRLGNGTVVDGIIHDGLWDVYNDHHMGICAEKCSSAYGISREAQDEHATKSYQRAALAW 99
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A7S1CPK7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPK7_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.900e-49
Identity = 80/106 (75.47%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASAWE 318
            +VCASGMKA+M+AAQ+IS GHR  MVAGG ESMSN PYYLP  R G R GHG VLDGI+HDGLWD YND HMG+CAEKCA  YGI REAQDA+A +SYKRAA+AWE
Sbjct:   81 KVCASGMKAIMMAAQAISTGHRDVMVAGGMESMSNIPYYLPGGRNGHRYGHGKVLDGIVHDGLWDVYNDQHMGMCAEKCAADYGISREAQDAYAIDSYKRAAAAWE 186
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A024U297_9STRA (Thiolase_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U297_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.290e-43
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASA 312
            +VCASGMK+V +AAQSI  G +  M+AGGFESMSN PYYLPKARTG RLG G ++DG+IHDGLWD YN+ HMG+C EKCAE YGI RE QD +A ESY RAA+A
Sbjct:  117 KVCASGMKSVAMAAQSILAGSQDAMLAGGFESMSNIPYYLPKARTGYRLGDGKLVDGVIHDGLWDPYNNQHMGLCGEKCAEEYGITREDQDKYAIESYTRAANA 220
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A061SB10_9CHLO (Acetyl-CoA C-acetyltransferase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SB10_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 1.300e-42
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASAW 315
            +VCASGMKAVMLAAQSI LGH R  VAGG ESMSN PYYLPKARTG RLG+  V+DG++ DGLWD + D HMG CAE+CAE + I RE QD HAAES+KRA S++
Sbjct:  132 KVCASGMKAVMLAAQSIQLGHSRIAVAGGMESMSNVPYYLPKARTGFRLGNAEVVDGLVRDGLWDPHGDLHMGSCAERCAEHFDISRETQDQHAAESWKRAKSSF 236
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A024U0R7_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024U0R7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.910e-42
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASA 312
            +VCASGMK+V +AAQSI  G +  M+AGGFESMSN PYYLPKARTG RLG G ++DG+IHDGLWD YN+ HMG+C EKCAE YGI RE QD +A ESY RAA+A
Sbjct:  117 KVCASGMKSVAMAAQSILAGSQDAMLAGGFESMSNIPYYLPKARTGYRLGDGKLVDGVIHDGLWDPYNNQHMGLCGEKCAEEYGITREDQDKYAIESYTRAANA 220
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A484EI41_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EI41_BRELC)

HSP 1 Score: 151 bits (381), Expect = 4.330e-42
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASA 312
            +VCASGMKA+   AQS+  G ++ ++AGGFESMSN PYY+PKARTG RLGHGS++DG+IHDGLWD YND HMG+C EKCA+ +G  RE QDA+A ESY+RA  A
Sbjct:   88 KVCASGMKALAFGAQSLLSGSQQIILAGGFESMSNAPYYIPKARTGYRLGHGSLVDGVIHDGLWDPYNDQHMGMCGEKCAQDFGFTREEQDAYAIESYRRAVDA 191
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A6A4ZTT3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZTT3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.120e-41
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASA 312
            +VCASGMK++ LA+QSI  G +  M+AGGFESMSN PYYLPKARTG RLG G ++DG+IHDGLWD YN+ HMG+C EKCAE Y I R+ QD +A ESY RAA+A
Sbjct:   20 KVCASGMKSIALASQSIIAGSQDVMLAGGFESMSNIPYYLPKARTGYRLGDGKLVDGVIHDGLWDPYNNQHMGLCGEKCAEEYSITRQDQDKYAIESYTRAANA 123
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A2T3HLJ6_9SPHI (Acetyl-CoA C-acyltransferase n=1 Tax=Pedobacter yulinensis TaxID=2126353 RepID=A0A2T3HLJ6_9SPHI)

HSP 1 Score: 149 bits (377), Expect = 1.530e-41
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASAWE 318
            +VCASGMKAVMLAAQSI+LG +  +VAGG ESMSN PYYL K R G RLGHG + DG++ DGLWD YND+HMG  AE CA   GIGREAQDA+A ESYKRA +A E
Sbjct:   85 KVCASGMKAVMLAAQSIALGQQDVVVAGGMESMSNVPYYLDKVRNGYRLGHGQLTDGLVKDGLWDVYNDYHMGSAAELCAAECGIGREAQDAYAIESYKRAQTAQE 190
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BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Match: A0A812U6S2_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U6S2_SYMMI)

HSP 1 Score: 148 bits (374), Expect = 1.850e-41
Identity = 70/106 (66.04%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 QVCASGMKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLDGIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASAWE 318
            +VCASGMKA MLAA SI+ G+R  +VAGG ESMSN PYYLP ARTG RLG+ +V+DG+IHDGLWD YND HMGIC E C++ Y I R+ QD +A  SY+RA  AWE
Sbjct:  107 KVCASGMKATMLAALSIASGYRNCVVAGGMESMSNIPYYLPNARTGYRLGNNTVVDGLIHDGLWDVYNDQHMGICGEVCSDTYRISRDDQDTYALRSYERATRAWE 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201699.5696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8S8_ECTSI7.610e-5479.82Acetyl-CoA acetyltransferase n=1 Tax=Ectocarpus si... [more]
A0A6H5KFT0_9PHAE3.200e-5279.80Thiolase_N domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S1CPK7_9STRA1.900e-4975.47Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A024U297_9STRA1.290e-4370.19Thiolase_N domain-containing protein n=1 Tax=Aphan... [more]
A0A061SB10_9CHLO1.300e-4270.48Acetyl-CoA C-acetyltransferase n=1 Tax=Tetraselmis... [more]
A0A024U0R7_9STRA1.910e-4270.19Uncharacterized protein n=9 Tax=Aphanomyces TaxID=... [more]
A0A484EI41_BRELC4.330e-4266.35Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6A4ZTT3_9STRA1.120e-4167.31Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2T3HLJ6_9SPHI1.530e-4169.81Acetyl-CoA C-acyltransferase n=1 Tax=Pedobacter yu... [more]
A0A812U6S2_SYMMI1.850e-4166.04Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201699contigH-elongata_contig201699:251..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5.8e-41
Seed eggNOG ortholog2880.D7G8S8
KEGG rclassRC00004,RC00326
KEGG koko:K00626,ko:K03066
KEGG ReactionR00238,R01177
KEGG Pathwayko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,ko03050,ko05169,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020,map03050,map05169
KEGG ModuleM00088,M00095,M00341,M00373,M00374,M00375
EggNOG free text desc.acetyl-CoA C-acetyltransferase activity
EggNOG OGsCOG0183@1,KOG1390@2759
EC2.3.1.9
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03051,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcetyl-CoA acetyltransferase
Ec32 orthologEc-22_002850.1
Exons1
Model size327
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.8143508-UTR-H-elongata_contig201699:250..2681622930134.8143508-UTR-H-elongata_contig201699:250..268Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201699 251..268 +
1691679294.1846838-UTR-H-elongata_contig201699:250..2681691679294.1846838-UTR-H-elongata_contig201699:250..268Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201699 251..268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.8319223-CDS-H-elongata_contig201699:268..5771622930134.8319223-CDS-H-elongata_contig201699:268..577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201699 269..577 +
1691679294.1960044-CDS-H-elongata_contig201699:268..5771691679294.1960044-CDS-H-elongata_contig201699:268..577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201699 269..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201699.5696.1prot_H-elongata_contig201699.5696.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201699 269..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201699.5696.1

>prot_H-elongata_contig201699.5696.1 ID=prot_H-elongata_contig201699.5696.1|Name=mRNA_H-elongata_contig201699.5696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MKAVMLAAQSISLGHRRTMVAGGFESMSNTPYYLPKARTGLRLGHGSVLD
GIIHDGLWDAYNDHHMGICAEKCAERYGIGREAQDAHAAESYKRAASAWE
EVR
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mRNA from alignment at H-elongata_contig201699:251..577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201699.5696.1 ID=mRNA_H-elongata_contig201699.5696.1|Name=mRNA_H-elongata_contig201699.5696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig201699:251..577+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTGCGCCTCTGGCATGAAGGCGGTGATGCTTGCCGCGCAGAGCAT
CTCCCTCGGCCATCGGAGGACCATGGTCGCCGGAGGCTTCGAGAGCATGT
CGAACACCCCATACTACCTCCCGAAGGCGAGGACGGGCCTGCGCCTCGGT
CACGGCAGCGTCCTCGACGGTATCATCCACGACGGCCTGTGGGACGCGTA
CAACGATCACCATATGGGGATTTGCGCCGAGAAGTGCGCGGAAAGGTACG
GCATCGGCCGAGAGGCGCAGGATGCCCACGCCGCGGAGAGCTACAAGCGT
GCGGCATCGGCCTGGGAAGAGGTGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig201699:251..577+

>mRNA_H-elongata_contig201699.5696.1 ID=mRNA_H-elongata_contig201699.5696.1|Name=mRNA_H-elongata_contig201699.5696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig201699:251..577+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCGGTGATGCTTGCCGCGCAGAGCATCTCCCTCGGCCATCGGAG
GACCATGGTCGCCGGAGGCTTCGAGAGCATGTCGAACACCCCATACTACC
TCCCGAAGGCGAGGACGGGCCTGCGCCTCGGTCACGGCAGCGTCCTCGAC
GGTATCATCCACGACGGCCTGTGGGACGCGTACAACGATCACCATATGGG
GATTTGCGCCGAGAAGTGCGCGGAAAGGTACGGCATCGGCCGAGAGGCGC
AGGATGCCCACGCCGCGGAGAGCTACAAGCGTGCGGCATCGGCCTGGGAA
GAGGTGAGAATGAAGGCGGTGATGCTTGCCGCGCAGAGCATCTCCCTCGG
CCATCGGAGGACCATGGTCGCCGGAGGCTTCGAGAGCATGTCGAACACCC
CATACTACCTCCCGAAGGCGAGGACGGGCCTGCGCCTCGGTCACGGCAGC
GTCCTCGACGGTATCATCCACGACGGCCTGTGGGACGCGTACAACGATCA
CCATATGGGGATTTGCGCCGAGAAGTGCGCGGAAAGGTACGGCATCGGCC
GAGAGGCGCAGGATGCCCACGCCGCGGAGAGCTACAAGCGTGCGGCATCG
GCCTGGGAAGAGGTGAGA
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