mRNA_H-elongata_contig20168.5694.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: D8LRU6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU6_ECTSI) HSP 1 Score: 463 bits (1191), Expect = 8.240e-149 Identity = 328/663 (49.47%), Postives = 410/663 (61.84%), Query Frame = 1
Query: 469 MAPPPPRGRAIPTSKVVLEEEEYVERLGDIIEDVYYPHNAKMFRALTRLAHRGPARGASNNTTPSGGNLIGTP----SSVGSSTPG-GLTPAPDEHESPAGDNTNRRGGRDSTGGALTRFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPV-NGDG---VSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCRIEGPPPSSTGHLIPPLLTEDANARPRSKRRLTRGSVGKNKQGKGELLLLSTGESDASEGETAEHHREKREGGVDQPELSAMAAVAEADSFS---LTPDPEGGYGGVEKLPGKGPGEKFSAEGEKRREAPEES-----KTEGSEGEIDSATTSASNSDDARSPLLSPRYEGSAVEAPRGGRRATPLVVKNNPKVIQAHATRFPMLPPPRP--GKWASPIESPSSSRKSVADLIAAGEDAVDYSEVPMTPSKVPGVDGDSPQITWGSIDGTPMILDPRNTPLPDGAVAGTMDVASMLGALGS--GGAGGGPRFEIKDLPAREKLAHRLEADDTRRKRSKLGPAAAT---ATLTPSXXXXXXXXXXXXXXXXRPRSXXXKKATTAVA----------ASLTPAARTLAAKLARKRSAATPFGGGLTPGRQARRSDLKKG 2355
MAPP P+GR++P K VLEEEEYV+RLG+IIE Y+P+NAKM+RAL LA G + + + TP+GG+++GTP S+G ST G GL S ++N G GGALT+FVATHTSEDN+AFAELQEK+QEAFR+RYFWAY+ +G+G S KLL++P+G+MMS ERR +MDAACADR KIGD RPNQV+TWKHRTRNQLMFSPN+A SND CRIE P + L+ T +A +KRR+ + S K+ +T ++++G+ H K G S LT P+ + G + GP +A G +R +E + + +EG +D +S S +D+ +P PR AP R A +VVK NPKVIQAHATRFP+ P +P G WASPIE PSSSR+SVA+L+A D+ Y EVPMTPS+VPGVDGDSPQITWGSIDGTPMILDPR TPLP+ A G MDVAS + LG GG G +FEIKDLPAR+KLAHRLEA DTRRKR+KLG AA T TP+ X XXX + A A++TPAAR+LAA+LA+++S TPFGGGLTPGRQ RR+D G
Sbjct: 1 MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHG--QDTTPSRTPAGGSMVGTPVTGLRSIGGSTDGDGLELRVSGGNSDGPSSSNCAG----NGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGST---SATATTKRRVIKQSEEVVKR---VARATATSTKESADGDC---HSSKSSGATXXXXXXXXXXXXXXXPSSDEALTATPDQPHQGEPEYQSSGPP---NAGGSTQRTEMDEPLHCPPRVDSNEG-VDDFGSSESRADEPPAP---PR------PAPPVSRGA--VVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPE-AGRGAMDVASFMETLGGVVGGVGQ-QQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGGRTPAKGKGXXXXXXAAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGG 631
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: A0A7S2WH54_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH54_9STRA) HSP 1 Score: 125 bits (313), Expect = 6.900e-26 Identity = 157/533 (29.46%), Postives = 235/533 (44.09%), Query Frame = 1
Query: 799 ALTRFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAK----SNDTCRIEGPPPSSTGH------------LIPPLLTEDANARPRSKRRLTRGSVGKNKQGKGELLLLSTGESDASEGETAEHHREKREGGVDQPELSAMAAVAEADSFSLTPDPEGGYGGVEKLPGKGPGEKFSAEGEKRREAPEESKTEGSEGEIDSATTSASNSDDARSPLLSPRYEGSAVEAPRGGRRATPLVVKN-NPKVIQAHATRFP------MLPPPRPGKWASPIESPSSSRKSVADLIAAGEDAVDYSE--VPMTPSKVPGVDGD-----SPQITWGSIDGTPMILDPRNTPLPDGAVAGTMDVASMLGALGSGGAGGGPRFEIKDLPAREKLAHRLEADDTRRKRSK-LGPAAATATLTPSXXXXXXXXXXXXXXXXRPRSXXXKKATTAVAASLTPAARTLAAKLARKRSAATPFG 2304
+L +FV HT+EDN++F +LQEK + R++++W Y+ D +L ++ DG +MS ERRA MD ACAD+ K+GD RPN+++ +R N LMF P + S + C + P+ G PL E P S +RL + GK+ G T +A G ++R+ V + E SA A A+ + G +P + A +R EA I SA +++ A+E+ R A + + +PK I+ TR M P R G ++S +PS+ S +D G D V MTPS +PG GD SP +TWG ++GTP+ILDP TPL G+L S G F + RE++AHRLE +++++++ +G A+ T TP RPR +TT SLTPAA+ LAA+LA +++A + FG
Sbjct: 95 SLDQFVRRHTTEDNESFDKLQEKAIQEHRRKHWWVYD----DDPEHRLRLLSDGTLMSHERRAIMDDACADQKKLGDDRPNELDYHTYRPVNTLMFLPGQSDLEVASREICGVGKEQPAILGTSKRNREAAEALTAAAPLAEEPD---PVSTKRL---ATGKSAPLAGSATHALTASGEAGVGS------DERQLVVRRAEPSAEAPSAQQLALREEGSDTGDLSLALVIPAR-------ARKSRREEA------------IASALAKVKCAEEEAQ-----ESRRLAIESVRKYHEARRKIDQTLSPKEIRHRNTRLTGSQFLSMTDPERKGPFSSAPPTPSTVT-SESDSEQGGNRPPDSINRLVAMTPSPMPGSGGDLGGSESPLMTWGELEGTPLILDPGATPL--------------TGSLESSGVS----FSMAQPRKREEVAHRLEKQVSKKRKARAIGSASRTMPATP--------------IGARPRG-----STTLHVGSLTPAAQGLAARLANQKAAQSSFG 549
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: A0A225X327_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X327_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.530e-23 Identity = 82/233 (35.19%), Postives = 116/233 (49.79%), Query Frame = 1
Query: 505 TSKVVLEEEEYVERLGDIIEDVYYPHNAKMFRA--LTRLAHRGPARGASNNTTPSGGNLIGTPSSVGSSTPGGLTPAPDEHESPAGDNTNRRGGRDSTGGALTRFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCRIEGPPPSSTGHLIPPLLTEDANARP 1197
+ KVVLEEEEYV+ L IIE ++P K+ R L R P + + GN+ + GS G P P + + L RFVATHTSEDN++F ELQEK + +RY WA++ GD KL ++ +G +S E+R D ACA + D RP+ ETWK+R RN L+F P + + D C++E P S L+ ++ + RP
Sbjct: 2 SKKVVLEEEEYVDALDQIIERDFFPDLPKLKRQAELLRDEEDLPWTNTTLRAATTQGNMSVRSDASGS---GWDQPTPMAEQLTGSPVVEPAEDKSQASMTLNRFVATHTSEDNESFNELQEKAVKDHERRYHWAFDDKKGDP---KLHLLTNGTWISKEQRLLADKACAPKGPKDD-RPSAPETWKYRARNPLLFPPELEATRDICQVE---PGSKSQLLLENVSNQRSGRP 224
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: A0A0P1A564_PLAHL (Nuclear protein ES2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A564_PLAHL) HSP 1 Score: 113 bits (283), Expect = 3.900e-23 Identity = 87/235 (37.02%), Postives = 127/235 (54.04%), Query Frame = 1
Query: 505 TSKVVLEEEEYVERLGDIIEDVYYPHNAKMFRALTRL-AHRGPARGASNNTTPSGGNLIGTPSSVGSSTPGGLTPAPDEHESPAGDNTNRRGGRDSTGGALT--RFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCRIEGPPPSSTGHLIPPLLTEDANARPR 1200
+ KVVLEE+EYVE LG IIE ++P K+ + L A G +T S + + +SV G P P + AGD +S ++T RFVATHTSEDN++F ELQEK +++Y WA++ N D KL ++ +G +S ++R +D ACA + + D RP ETW++R RN L+F P + + D C+I+ +S G L LL +D N+R R
Sbjct: 2 SKKVVLEEDEYVETLGLIIERDFFPDLPKLQKQRRLLLADEGTETALRAISTTSDDTSVRSNASV----VGWDQPTP-YAKLAAGDRVQVEDDSNSVMASMTLNRFVATHTSEDNESFKELQEKAVNDHQRKYHWAFDE-NKDKGDSKLHLLANGTWISKDQRKLVDEACAPKG-LKDDRPGFPETWRYRARNPLIFQPELEATRDICQIKA---ASKGQL---LLEKDPNSRSR 223
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: A0A329SZM5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZM5_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.830e-22 Identity = 82/212 (38.68%), Postives = 114/212 (53.77%), Query Frame = 1
Query: 511 KVVLEEEEYVERLGDIIEDVYYPHNAKMFRALTRLAHRGPARGASNNTTPSGGNLIGTPS-SVGSSTPGGLTPAPDEHESPAGDNTNRRGGRDSTGGALT--RFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCRIEGPP 1137
KVVLEEEEYVE LG IIE ++P K+ + L ++ T + G S G+S G P P E PA D G D+ ++T RFVATHTSEDN++F ELQEK + ++RY WA++ G KL ++ +G +S E+R D ACA + D RP+ ETWK+R RN L+F P + + D C+++ P
Sbjct: 4 KVVLEEEEYVEALGQIIERDFFPDIPKLKKQTELLRDEEEGLPWTDTTLHAASTSRGNASVRSGASGSGWDQPTPIV-EQPAIDQAQDEGADDNAKASMTLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDNDKEKGDP-KLHLLTNGTWISKEQRQIADDACAPKGPKDD-RPSAPETWKYRARNPLLFPPELEATRDICQVKADP 212
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: A0A2P4YVG3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVG3_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.940e-22 Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 1
Query: 511 KVVLEEEEYVERLGDIIEDVYYPHNAKMFRALTRLAHRGPARGASNNTTPSGGNLIGTPSSVGSSTPGGLT-PAPDEHESPAGDNTNRRGGRDSTGGALT--RFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCRIEGPP 1137
KVVLEEEEYVE LG IIE ++P +K+ + L ++ T G S +++ G P P +S + D + ++T RFV THTSEDN+AF ELQEK + +RY WA++ GD KL ++ +G +S E+R D ACA + D RP+ +TWK+R RN L+F P++ + + C++E P
Sbjct: 4 KVVLEEEEYVEALGQIIERDFFPDLSKLKKQSELLRDEEENLPWTDTTLRVASMTRGNTSERSNASDSGWDEPTPTLEQSTGSPLQDEDHAEDKSRASMTLNRFVTTHTSEDNEAFNELQEKTVKDHERRYHWAFDDKKGDP---KLHLLTNGTWISKEQRQIADKACAPKGPKDD-RPSAPQTWKYRARNPLLFPPDLETTREICQVESGP 211
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: A0A662XTQ1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTQ1_9STRA) HSP 1 Score: 114 bits (286), Expect = 2.450e-22 Identity = 80/205 (39.02%), Postives = 110/205 (53.66%), Query Frame = 1
Query: 508 SKVVLEEEEYVERLGDIIEDVYYPHNAKMFRALTRLAHRGPARGASNNTTPSGGNLIGTPSSVGSSTPGGLTPAPDEHESPAGDNTNRRGGRDSTGGALTRFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCR 1122
+KVVLEEEEYVE LG+IIE ++P + R L+ A T L+ T + D+ +S G ++ T L+RFVATHTSEDN+AF ELQEK E ++RY WA++ +G G KL ++ DG +S ++R D ACA + D RP+ ETWK R RN L+F P++A + D CR
Sbjct: 4 TKVVLEEEEYVEALGEIIERDFFPDLPSLKRQTAVLSSWDQPSPAREPTANRANALVRN-----------RTRSEDDEKSAV----ESEGVQNMT---LSRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDNSGKGDP-KLHLLTDGTWISKQQRHLADEACAPKGPKDD-RPSAPETWKFRARNPLLFPPDLATTRDICR 188
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: A0A662XZJ0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZJ0_9STRA) HSP 1 Score: 115 bits (287), Expect = 3.070e-22 Identity = 83/211 (39.34%), Postives = 113/211 (53.55%), Query Frame = 1
Query: 493 RAIPTSKVVLEEEEYVERLGDIIEDVYYPHNAKMFRALTRLAHRGPARGASNNTTPSGGNLIGTPSSVGSSTPGGLTPAPDEHESPAGDNTNRRGGRDSTGGALTRFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCRI 1125
R + +KVVLEEEEYVE LG+IIE ++P + R T + + T SG N + V S T +E G ++ T L RFVATHTSEDN+AF ELQEK E ++RY WA++ +G G KL ++ DG +S ++R D ACA + D RP+ ETWK R RN L+F P++A + D CR+
Sbjct: 438 RIMGKTKVVLEEEEYVEALGEIIERDFFPDLPSLKRQ-TAVPSGWDQPSPAREPTASGTNAL-----VRSRT---------RNEDDEKSAVESEGVQNMT---LNRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDNDGKGDP-KLHLLTDGTWISKQQRHLADEACAPKGPKDD-RPSAPETWKFRARNPLLFPPDLATARDICRL 628
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: A0A6A3N5K9_9STRA (Pyr_redox_2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N5K9_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.130e-22 Identity = 86/223 (38.57%), Postives = 116/223 (52.02%), Query Frame = 1
Query: 505 TSKVVLEEEEYVERLGDIIEDVYYPHNAKMFRALTRLAHRGPARGASNNTTPSGGNLIGTPS--SVGSSTPGGLTPAPDEHESPAGDNTNRRGGRDSTGGALT--RFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCRIEGPPPSSTGHLI 1161
+ KVVLEEEEYVE LG IIE ++P K+ + T L +TT N G S S GS T G P P +S A N + ++T FVATHTSEDN++F ELQ+K + ++RY WAY+ G +L ++ +G +S E+R D ACA + D RP+ ETWK R RN L+F P + + D CR+E P S L+
Sbjct: 2 SKKVVLEEEEYVEALGQIIERDFFPDLPKL-KQQTELLREEEGGIPWTDTTLQAANARGNFSVRSSGSGT-GWDHPTPQSDQSVADANHDNAAAEAEAKASMTLNHFVATHTSEDNESFVELQQKAVKDHQRRYHWAYDDDKERGDP-ELHLLTNGTWISKEQRRIADQACAPKGPKDD-RPSAPETWKFRARNPLLFPPELEATRDICRVE---PGSGNQLL 217
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Match: W2Q457_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q457_PHYPN) HSP 1 Score: 110 bits (275), Expect = 4.410e-22 Identity = 87/217 (40.09%), Postives = 116/217 (53.46%), Query Frame = 1
Query: 511 KVVLEEEEYVERLGDIIEDVYYPHNAKMFRALTRLAHRGPARGASNNTTP------SGGNLIGTPSSVGSSTPGGLTPAPDEHESPAGDNTNRRGGRDS--TGGALTRFVATHTSEDNQAFAELQEKEQEAFRKRYFWAYEPVNGDGVSLKLLMMPDGRMMSTERRAKMDAACADRSKIGDHRPNQVETWKHRTRNQLMFSPNIAKSNDTCRIEGPP 1137
KVVLEEEEYVE LG IIE ++P K+ + T+L RG G T S GN + S++ S G P P S A D DS T L RFVATHTSEDN++F ELQEK + ++RY WA+ G KL ++ +G +S E+R D ACA + D+RP+ ETWK+R RN L+F P + + D C+++ P
Sbjct: 4 KVVLEEEEYVEALGQIIERDFFPDLPKL-KKQTKLL-RGEEEGLPWTDTTLRVASTSRGN-VSVWSNISDS--GWDQPTPVVEHS-ADDQVQGEDSDDSAKTSMTLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFVDDKEKGDP-KLHLLTNGTWISKEQRQIADEACASKGPK-DYRPSAPETWKYRARNPLLFPPELEATRDICQVKADP 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20168.5694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20168.5694.1 >prot_H-elongata_contig20168.5694.1 ID=prot_H-elongata_contig20168.5694.1|Name=mRNA_H-elongata_contig20168.5694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=748bp MMADSSRLHITTLDCDRKFTPSITRPSMPTPNTLARLEDPRAWHARGEVGback to top mRNA from alignment at H-elongata_contig20168:1909..6952+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20168.5694.1 ID=mRNA_H-elongata_contig20168.5694.1|Name=mRNA_H-elongata_contig20168.5694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5044bp|location=Sequence derived from alignment at H-elongata_contig20168:1909..6952+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20168:1909..6952+ >mRNA_H-elongata_contig20168.5694.1 ID=mRNA_H-elongata_contig20168.5694.1|Name=mRNA_H-elongata_contig20168.5694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4488bp|location=Sequence derived from alignment at H-elongata_contig20168:1909..6952+ (Himanthalia elongata Himel1 dioecious)back to top |