mRNA_H-elongata_contig20156.5688.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20156.5688.1
Unique NamemRNA_H-elongata_contig20156.5688.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: D7FV78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV78_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 5.570e-45
Identity = 81/97 (83.51%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 QMVARLMKFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEECYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            Q+VARL KFNNEVVYE LLTP++PF+LDYLEVVFSLC+VMC IY KF+EEECYKNA VY+GLVKVDNKIKHH+INVFAKEFTDMSTNIA+ ELK+LR
Sbjct:  199 QIVARLKKFNNEVVYENLLTPEVPFSLDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMSTNIAKDELKTLR 295
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A836CEB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEB8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.670e-34
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    7 VARLMKFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEECYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            VARL KF +E+VYE LLTP +PFALDY EV FSLCD++C +Y K +EEECY N HV+  LVKVD K+K HV+NV AKEFT+MS  IARSEL +LR
Sbjct:  131 VARLCKFGSEMVYEHLLTPPLPFALDYFEVFFSLCDIICQVYNKLMEEECYSNVHVFEALVKVDAKVKRHVLNVTAKEFTEMSAKIARSELAALR 225
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A7S2CN58_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CN58_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.880e-26
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:   10 ARLMKFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEECYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            A L +F NEVVY  L TP + F LDY EV+FSLCDV+ L+Y KF++EE ++N+ V++ LVK D++IKHHVIN+ AKE TD+ST I R+E  +LR
Sbjct:   60 ANLYRFGNEVVYLHLQTPHVAFELDYREVLFSLCDVLSLLYNKFVDEEIWQNSAVFDMLVKADSRIKHHVINLLAKELTDLSTQILRNEFSALR 153
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A7S2GL83_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GL83_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.320e-20
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   16 LMKFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEECYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            L + ++E+VY  L+TP +PF +DY+EV+ SLCDV+ L+Y K +  E +++  VY+ LV+VD++IKHH+IN  AKE TD+S +I R EL   R
Sbjct:    4 LFRSSHEIVYMHLVTPHVPFPIDYVEVIHSLCDVLVLVYHKLVHCESWQSPAVYDMLVRVDSRIKHHIINRIAKELTDLSISILRRELLEYR 95
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A7S3MFY2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFY2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.080e-16
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   22 KFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEECYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            KFNN VV+E L  P +PF LDYLEV   LC  +  +Y K + EECY N  +Y+ +V++D ++KHH+IN+ +KE TD  +   +S  +SLR
Sbjct:  173 KFNNAVVFEHLRLPHIPFELDYLEVFTGLCVELSKLYEKLIHEECYANQIIYDTIVRLDTRVKHHIINLVSKEVTDACSAKMKSNTRSLR 262
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A485KZ76_9STRA (Aste57867_13517 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZ76_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.050e-14
Identity = 36/90 (40.00%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   22 KFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEECYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            K+NN+ VY++L+TP +PF L+Y +VV SLC+V+ L+YG+ +++ C  N  V+  L++ D KIK   +   +K+ T ++T++ + EL  LR
Sbjct:  156 KWNNKPVYQRLVTPNVPFPLEYCQVVVSLCEVLTLVYGRVVDDVCSSNPCVFQALLRFDEKIKKFFLESISKQLTTIATSVIKDELALLR 245
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A4D9CUK2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUK2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.480e-14
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   13 RLMKFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIY---GKFLEEECYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            R+ +F+NEVV++    P +PF LDYLEV+ SLC  + L+Y   G        ++A ++  LVK+D K+KHH+IN  AKE T ++T +A+ EL+  R
Sbjct:  189 RIFRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGHRHAASLERDAALFEVLVKIDAKVKHHIINPIAKELTSLATRLAKQELEGWR 284
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A7R9Y7M0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7M0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.060e-13
Identity = 32/72 (44.44%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   10 ARLMKFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEECYKNAHVYNGLVKVDNKIKHHVIN 225
            A L +F++EV+YE+L  PQ+   +DY E++ SLC+ + L+Y KFLE +CY NA +++ L+++D K+K H++N
Sbjct:  187 AGLYRFHSEVIYERLCLPQLSIEIDYFELIISLCETLTLLYKKFLESDCYSNALLFDALMRMDAKVKQHLVN 258
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BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A8K1C382_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C382_PYTOL)

HSP 1 Score: 84.3 bits (207), Expect = 1.230e-13
Identity = 39/91 (42.86%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   22 KFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEE-CYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            K+N   V+ +LLTP +PF LDY EV+ SLCD++ L+Y KF+E+  C +N  ++  +V+ D KIK  VI+   KEF+ ++ ++   EL S+R
Sbjct:  311 KWNQRPVFRRLLTPSIPFPLDYREVMLSLCDILALVYSKFVEDNICSENIFLFQAIVRFDEKIKKLVIDPVKKEFSAVAASVLNDELTSVR 401
[Close]
BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Match: A0A2P4Y6K6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6K6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.040e-12
Identity = 34/91 (37.36%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   22 KFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEE-CYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR 291
            K+NN  VY +L+TP +PF LDY EV+ SLCD++ LIY K +E+    +N +++  +++ D++IK   I+   KEF+ +++ +   E++ +R
Sbjct:   93 KWNNRPVYHRLMTPPIPFPLDYREVLLSLCDILALIYSKLIEDSSASENLNLFQSIIRFDDRIKKLFIDPVKKEFSAVASQVMAEEMRQVR 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20156.5688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV78_ECTSI5.570e-4583.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEB8_9STRA7.670e-3467.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CN58_9STRA3.880e-2657.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2GL83_9STRA1.320e-2048.91Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3MFY2_9STRA1.080e-1646.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A485KZ76_9STRA1.050e-1440.00Aste57867_13517 protein n=1 Tax=Aphanomyces stella... [more]
A0A4D9CUK2_9STRA3.480e-1442.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7R9Y7M0_9STRA1.060e-1344.44Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8K1C382_PYTOL1.230e-1342.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4Y6K6_9STRA1.040e-1237.36Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20156contigH-elongata_contig20156:3925..6318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue5.1e-39
Seed eggNOG ortholog2880.D7FV78
EggNOG OGs2ADY6@1,2RYUG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_000090.1
Exons2
Model size1838
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20156.5688.1prot_H-elongata_contig20156.5688.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20156 3928..4774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930133.8820615-UTR-H-elongata_contig20156:3924..39271622930133.8820615-UTR-H-elongata_contig20156:3924..3927Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20156 3925..3927 +
1691679293.793556-UTR-H-elongata_contig20156:3924..39271691679293.793556-UTR-H-elongata_contig20156:3924..3927Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20156 3925..3927 +
1622930133.9481072-UTR-H-elongata_contig20156:4774..63181622930133.9481072-UTR-H-elongata_contig20156:4774..6318Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20156 4775..6318 +
1691679293.8216436-UTR-H-elongata_contig20156:4774..63181691679293.8216436-UTR-H-elongata_contig20156:4774..6318Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20156 4775..6318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930133.8996081-CDS-H-elongata_contig20156:3927..40741622930133.8996081-CDS-H-elongata_contig20156:3927..4074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20156 3928..4074 +
1691679293.8047013-CDS-H-elongata_contig20156:3927..40741691679293.8047013-CDS-H-elongata_contig20156:3927..4074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20156 3928..4074 +
1622930133.9292827-CDS-H-elongata_contig20156:4630..47741622930133.9292827-CDS-H-elongata_contig20156:4630..4774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20156 4631..4774 +
1691679293.8128302-CDS-H-elongata_contig20156:4630..47741691679293.8128302-CDS-H-elongata_contig20156:4630..4774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20156 4631..4774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20156.5688.1

>prot_H-elongata_contig20156.5688.1 ID=prot_H-elongata_contig20156.5688.1|Name=mRNA_H-elongata_contig20156.5688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MVARLMKFNNEVVYEQLLTPQMPFALDYLEVVFSLCDVMCLIYGKFLEEE
CYKNAHVYNGLVKVDNKIKHHVINVFAKEFTDMSTNIARSELKSLR*
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mRNA from alignment at H-elongata_contig20156:3925..6318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20156.5688.1 ID=mRNA_H-elongata_contig20156.5688.1|Name=mRNA_H-elongata_contig20156.5688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2394bp|location=Sequence derived from alignment at H-elongata_contig20156:3925..6318+ (Himanthalia elongata Himel1 dioecious)
CAGATGGTGGCTCGGTTGATGAAGTTCAACAACGAGGTGGTGTACGAGCA
GCTTCTGACTCCTCAAATGCCGTTCGCGCTGGACTACTTGGAGGTGGTGT
TTTCTCTGTGTGACGTCATGTGCCTCATTTACGGCAAGTTTCTTGAAGAA
GTGAGTAAAGTGGAAGTAAGGTAACCGATGTCGTCGTTAGAGGTTAGGGG
TTAGGGAGAGAAGGAAGGGAATCATTCCTGCCTCAAATAGGGTCGAGCTG
CGAATCACCCCCAGGATTTCCGGCGTGCTGTTAACTTTTGTGACTATTGG
TTTTTAATCCTACAGTAGTTACCCCGGTTCCAGTTCCGGTTCCTTCAATA
GGGTTAGGGTTAGTCTAGATATAGGGATATAATGTAACGGTCTGTACAAT
CGTCTCAATGTCTCAATGTTGACTATCTCACTCCCTGTGAATACCGGTTA
TATGCAGTTGGTTGGTTCGTTTCACTGCCGGCTTGGAAGCCGTTATTCGC
GTTATTCCTGTTATTCCGCGCATTTCAATAAGTACAGCCTTACATTCGGT
GTTTGAGCGTATGTCTAATGACAAGGCGGCAGGGCATTGATTGGAGTTAA
AGATGAAGATGACAATAGAGATACTTAAATGTATGTGCGCTTTTACTGTC
GCCCCTATGTATTCTTCCCCTTCTTCCCCTTCTGACGACAAACAACAAAC
ATTAAGGAGTGTTACAAAAATGCCCATGTCTACAACGGTCTGGTGAAGGT
TGACAACAAAATTAAGCACCACGTCATCAACGTATTCGCCAAGGAGTTCA
CAGACATGAGCACCAACATCGCGAGGTCTGAGCTCAAAAGCTTACGCTGA
TCTACGCCGACGGTGGTTACAGCAATTCGATCCCGGCATATCCCATCATA
TTCAAGTATCATGATGGTGGTGGTGGCATCGACCGCATGGAAGAGGATAA
TTTTGCGAATCTGTGCTGCATAGGAACGGACCTCTCTCTTTTTCCTCAAA
GATGTTCCCAGACTGGCTACCAGATGCTGCTCGTCTTGACGTTTTGGGGT
ATGACTGACGTGACCCTGTATGACAGATGGCATGTTGTGATGCCATTATG
CCTTGTCTTGATATTAATAGTATTACCGTTTCAATTCTTGACGACAATGT
GCTGGTGTTGATTTGGGTGCGTATCTCGCGAGATCGCTGCTATCGTTGCA
TACCTATTTGGCCTATCTGGCCTATCGTTACCTCGAGGTCGCGTGAAGGA
TCTGATACAACAGAAGCAGCTCTTTTTTGAAGAACAAAAACGAGTCCGCT
CCCCGACCCCTTGAGGGTCCAAAGCTCTAGAATCTTCAGTCTCCTCGCCC
GGTGATCGAGATGGGAGATGTTCCAAAACGGCCTTATCCCCGTGAGGCGT
TCGGGGAGGTGAGAGACAAGATATGTTGCTACGGTGTGGTAAGAATTTGA
CGCGATTCCCCTGAGATTTGAAAGGTTGACTTTCAGTTCAGTCAAAATAT
GGGTTGTGCCGCCCATTATGAAAATTAGACAATGATGGAATGATGGTCCA
GTTTTTTCCTTGGGGGGGAAGAGGGTTGAATATATTTGTTTTCTTGACTC
TCATTCATCTGTCGCTGACAACTTGTCATACACTGTACCTAAGTTTTGAG
GTCCGCAGTAGGGTCCTGACAGTAACCGCAGCACTGTATCAAGTGGTAGG
TTTTATAGGGTGTGGAGGGCGTTCCTTCTTTTTAGGTAATACTAAATACG
GTACAGTATAAATCCATCCATCCACCCATTTCCAAGGGAAAATCGTTTTA
AGCACTGAAAGTGCGGTACGATGGAGTTGTCATTGGTTTGATATCGTTGG
TCGCTCTCCGCCACGAGATAGTGGGTTATTTACATGCATTTAGTAATAGT
ATTTACATGCATTTAGTATAGTATTTATTTTCGACCTTAACATTAGCGAG
AGGTGGGGGTATTACCTGTCGATTGTCGGCAGTAGTCATCCAGCCGGTGC
TATAGCTCGAGTTTGATATCGCCGGGCAGGTTTTTCGCAAACGCCTCCCT
ACGATGCACGCCCAGTGGATGTCGACGAAACCGACTCAGTTAGAGTTTCG
AAGTCCATTTTTCTTTGTGTGGTGCTACAGATTACACTCAAGTCCTACTA
CTATTTAGTACTACTGATTGTCAATGATGGTGGTGCAGTAGTTATAGGGT
TATAGGGTTAGTATTAGTCAGTTCGCACTGATTGATAAATAGTTCAAAGT
TGCTTCCTGGCGCTTATATAGCTAGTGGCTAATGACTTGTGCATGTAGTA
GCTACAGTATATCGTAGGGCTGACGCAGGATGGAACGGCCGAACCCTTCT
TGTGAGACCAAATTCCTAGGCGCGAACGGAGACAGAAAAAAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig20156:3925..6318+

>mRNA_H-elongata_contig20156.5688.1 ID=mRNA_H-elongata_contig20156.5688.1|Name=mRNA_H-elongata_contig20156.5688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig20156:3925..6318+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCTCGGTTGATGAAGTTCAACAACGAGGTGGTGTACGAGCAGCT
TCTGACTCCTCAAATGCCGTTCGCGCTGGACTACTTGGAGGTGGTGTTTT
CTCTGTGTGACGTCATGTGCCTCATTTACGGCAAGTTTCTTGAAGAAATG
GTGGCTCGGTTGATGAAGTTCAACAACGAGGTGGTGTACGAGCAGCTTCT
GACTCCTCAAATGCCGTTCGCGCTGGACTACTTGGAGGTGGTGTTTTCTC
TGTGTGACGTCATGTGCCTCATTTACGGCAAGTTTCTTGAAGAAGAGTGT
TACAAAAATGCCCATGTCTACAACGGTCTGGTGAAGGTTGACAACAAAAT
TAAGCACCACGTCATCAACGTATTCGCCAAGGAGTTCACAGACATGAGCA
CCAACATCGCGAGGTCTGAGCTCAAAAGCTTACGCTGAGAGTGTTACAAA
AATGCCCATGTCTACAACGGTCTGGTGAAGGTTGACAACAAAATTAAGCA
CCACGTCATCAACGTATTCGCCAAGGAGTTCACAGACATGAGCACCAACA
TCGCGAGGTCTGAGCTCAAAAGCTTACGCTGA
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