mRNA_H-elongata_contig201542.5687.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201542.5687.1
Unique NamemRNA_H-elongata_contig201542.5687.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: M5G2X2_DACPD (Chorismate mutase n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5G2X2_DACPD)

HSP 1 Score: 52.8 bits (125), Expect = 7.330e-7
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 NQTSVAPRSLESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            N  S  P SLE++R TLIR EETIIFSLIERGQF  N  IY
Sbjct:    5 NLLSADPLSLETIRGTLIRLEETIIFSLIERGQFALNPTIY 45
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A1Z5JID4_FISSO (Chorismate mutase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JID4_FISSO)

HSP 1 Score: 51.6 bits (122), Expect = 1.940e-6
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 NQTSVAPRSLESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            N T++   SLES+R+TLIRQEET+IF+LIER Q+ QN  +Y
Sbjct:   39 NLTTLDVLSLESIRSTLIRQEETVIFALIERAQYRQNRIVY 79
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A7S2PPT1_9STRA (Chorismate mutase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PPT1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.640e-6
Identity = 22/33 (66.67%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   25 SLESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            SL+++R +LIRQEETIIF+LIER QF+QN ++Y
Sbjct:   65 SLDTIRKSLIRQEETIIFALIERSQFMQNRNVY 97
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A7S2SIA4_9STRA (Chorismate mutase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIA4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.750e-6
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   25 SLESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            SL SVR +LIRQEETIIF+LIER QF+QN  IY
Sbjct:   28 SLASVRKSLIRQEETIIFALIERAQFVQNQRIY 60
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A167MMN7_CALVF (Chorismate mutase n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167MMN7_CALVF)

HSP 1 Score: 50.1 bits (118), Expect = 6.770e-6
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   10 SVAPRSLESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            S  P SL+S+R TLIR EETIIFSLIER QF  N  IY
Sbjct:    8 SADPLSLDSIRGTLIRLEETIIFSLIERAQFALNPTIY 45
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A484DYB4_BRELC (Chorismate mutase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYB4_BRELC)

HSP 1 Score: 50.1 bits (118), Expect = 6.820e-6
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   19 PRSLESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            P  L+  RN LIRQEETIIF+LIER QF +NL++Y
Sbjct:   13 PVKLDDFRNVLIRQEETIIFALIERAQFPRNLEVY 47
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A7S2A4D4_9STRA (Chorismate mutase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A4D4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.830e-6
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   25 SLESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            SL+S+R+TLIRQEETIIF+LIER Q+ QN  +Y
Sbjct:  111 SLDSIRSTLIRQEETIIFALIERAQYRQNAVVY 143
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A418F363_9STRA (Chorismate mutase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F363_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.300e-6
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   28 LESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            L+  RN LIRQEETIIFSLIER QFL+N  IY
Sbjct:   10 LDDYRNVLIRQEETIIFSLIERAQFLRNAPIY 41
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A261Y684_9FUNG (Chorismate mutase n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y684_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 8.570e-6
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   19 PRSLESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            P SL+++R TL+R E+TIIF+LIER QF QN D+Y
Sbjct:   10 PFSLDNIRRTLVRLEDTIIFALIERAQFAQNNDLY 44
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BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Match: A0A6A5AXR2_9STRA (Chorismate mutase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AXR2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.320e-6
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   28 LESVRNTLIRQEETIIFSLIERGQFLQNLDIY 123
            L+  RN LIRQEETIIFSLIER QFL+N  IY
Sbjct:   10 LDDYRNVLIRQEETIIFSLIERAQFLRNAPIY 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201542.5687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M5G2X2_DACPD7.330e-768.29Chorismate mutase n=1 Tax=Dacryopinax primogenitus... [more]
A0A1Z5JID4_FISSO1.940e-660.98Chorismate mutase n=2 Tax=Fistulifera solaris TaxI... [more]
A0A7S2PPT1_9STRA3.640e-666.67Chorismate mutase (Fragment) n=1 Tax=Leptocylindru... [more]
A0A7S2SIA4_9STRA6.750e-675.76Chorismate mutase n=1 Tax=Rhizochromulina marina T... [more]
A0A167MMN7_CALVF6.770e-668.42Chorismate mutase n=1 Tax=Calocera viscosa (strain... [more]
A0A484DYB4_BRELC6.820e-665.71Chorismate mutase n=1 Tax=Bremia lactucae TaxID=47... [more]
A0A7S2A4D4_9STRA6.830e-669.70Chorismate mutase n=1 Tax=Ditylum brightwellii Tax... [more]
A0A418F363_9STRA7.300e-675.00Chorismate mutase n=1 Tax=Aphanomyces astaci TaxID... [more]
A0A261Y684_9FUNG8.570e-662.86Chorismate mutase n=1 Tax=Bifiguratus adelaidae Ta... [more]
A0A6A5AXR2_9STRA9.320e-675.00Chorismate mutase (Fragment) n=1 Tax=Aphanomyces a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201542contigH-elongata_contig201542:23..145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930133.8355548-CDS-H-elongata_contig201542:22..1451622930133.8355548-CDS-H-elongata_contig201542:22..145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201542 23..145 -
1691679293.7807126-CDS-H-elongata_contig201542:22..1451691679293.7807126-CDS-H-elongata_contig201542:22..145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201542 23..145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201542.5687.1prot_H-elongata_contig201542.5687.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201542 23..145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201542.5687.1

>prot_H-elongata_contig201542.5687.1 ID=prot_H-elongata_contig201542.5687.1|Name=mRNA_H-elongata_contig201542.5687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
NQTSVAPRSLESVRNTLIRQEETIIFSLIERGQFLQNLDIY
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mRNA from alignment at H-elongata_contig201542:23..145-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201542.5687.1 ID=mRNA_H-elongata_contig201542.5687.1|Name=mRNA_H-elongata_contig201542.5687.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig201542:23..145- (Himanthalia elongata Himel1 dioecious)
AATCAGACCTCCGTAGCGCCACGGAGCCTGGAAAGTGTTCGGAACACACT
AATACGACAGGAGGAGACGATTATCTTCTCGCTGATCGAGAGGGGGCAAT
TCCTACAAAACTTGGACATCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig201542:23..145-

>mRNA_H-elongata_contig201542.5687.1 ID=mRNA_H-elongata_contig201542.5687.1|Name=mRNA_H-elongata_contig201542.5687.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig201542:23..145- (Himanthalia elongata Himel1 dioecious)
AATCAGACCTCCGTAGCGCCACGGAGCCTGGAAAGTGTTCGGAACACACT
AATACGACAGGAGGAGACGATTATCTTCTCGCTGATCGAGAGGGGGCAAT
TCCTACAAAACTTGGACATCTACAATCAGACCTCCGTAGCGCCACGGAGC
CTGGAAAGTGTTCGGAACACACTAATACGACAGGAGGAGACGATTATCTT
CTCGCTGATCGAGAGGGGGCAATTCCTACAAAACTTGGACATCTAC
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