mRNA_H-elongata_contig20137.5679.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20137.5679.1
Unique NamemRNA_H-elongata_contig20137.5679.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A6H5JE30_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE30_9PHAE)

HSP 1 Score: 457 bits (1175), Expect = 2.640e-155
Identity = 232/338 (68.64%), Postives = 263/338 (77.81%), Query Frame = 1
Query:    1 PPTMEAAVFEAPRFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQV------------------------GNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDAGCCI 942
            PP+MEAA+ E  RFR NTL Y+W QA  AIA+P +LPDGLP V+ER   GD+GP GV+SRKSACEFSS+   DV+ MLQACR RG TLSGALSAACLMACSDVAH EGSRG+N YKFL+AVDLRRFGTG+YS   DWTGGTVACAGG+IDY V V AGSG  L G  GE     AREEFW LA++CKTAT+DMV+KET+REAVAVFDWAMEN+ IWAS+ ++SRNAKTLGRAYTCGVSNMGRYPFDTQV                        GNLSLKA+HYGTSQSA GSLFQLSCGT+ GELFMTLQFAEP+VTR   +A+L+G+  N+ A C I
Sbjct:  244 PPSMEAAIVEGKRFRINTLRYMWRQATVAIAKPMVLPDGLPSVDERSEGGDEGPFGVSSRKSACEFSSVPADDVSAMLQACRERGLTLSGALSAACLMACSDVAHAEGSRGSNRYKFLLAVDLRRFGTGDYSDMGDWTGGTVACAGGSIDYAVTVPAGSGSMLVGRDGEEAARVAREEFWRLAKRCKTATQDMVEKETLREAVAVFDWAMENIHIWASVDMQSRNAKTLGRAYTCGVSNMGRYPFDTQVRSPFGTGVRSVSSPFLLVGATMCVGNLSLKAVHYGTSQSARGSLFQLSCGTIDGELFMTLQFAEPLVTREAGQAYLRGIIDNVRAACGI 581          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A6H5JIH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH8_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 2.710e-92
Identity = 145/200 (72.50%), Postives = 163/200 (81.50%), Query Frame = 1
Query:    1 PPTMEAAVFEAPRFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIR 600
            PP+MEAA+ E  RFR NTL Y+W+QA  AIA+P +LPDGLP V+ER   GD+GP GV+SRKSACEFSS+   DV+ MLQACR RG TLSGALSAACLMACSDVAH EGSRG N YKFL+AVDLRRFGTG+YS   DWTGGTVACAGGAIDY V V AGSG RLAG  GE     AREEFW LA++CKTAT+DMV+KET+R
Sbjct:  222 PPSMEAAIVEGKRFRINTLRYMWDQATVAIAKPMVLPDGLPSVDERSEGGDEGPFGVSSRKSACEFSSVPADDVSAMLQACRERGLTLSGALSAACLMACSDVAHAEGSRGLNLYKFLLAVDLRRFGTGDYSDMGDWTGGTVACAGGAIDYAVTVPAGSGSRLAGRDGEEAARVAREEFWRLAKRCKTATQDMVEKETLR 421          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A835ZIW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIW7_9STRA)

HSP 1 Score: 237 bits (605), Expect = 6.060e-70
Identity = 146/327 (44.65%), Postives = 185/327 (56.57%), Query Frame = 1
Query:    1 PPTME-AAVFEAPRFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANPYKFLMAVDLRRFGTG----------EYSGSD----DWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDAGC 936
            PP++E A V E  +F   T  YL +QAA+ +  P+++ D LP  E R            +R++ CE  ++   ++   L ACR +G TL+ ALSAA L+ACSDVAH +GS   + YKFL+AVDLR FG G             G++    DWT G VACAGGA+D+V G+ A SG  L      AE +     FW LA++ +          T REA AVFDW M  + I    + E+R   TLGRAYTCGVSNMGRY      G   + ALHY TS S  GSL+QLSCGTVGG L MT QFAEP+V R+M  AF   +   L A C
Sbjct:  277 PPSIEDATVAEPGKFGLGTARYLLKQAASGVFGPRLVHDHLPPPERRATPA----FAPEARRTICEVRALEADELQAALAACRQKGLTLTAALSAAALLACSDVAHADGSDAWHNYKFLLAVDLRPFGAGAPGHQGKPNANGGGAEARALDWTEGAVACAGGAMDWVAGLPANSGRALVSGAAGAERD-----FWRLARRARGEMAAFAASGTAREAAAVFDWGMRAIEIGDVCEREARRPATLGRAYTCGVSNMGRYAHAATTG-ARVAALHYATSHSPWGSLYQLSCGTVGGRLCMTFQFAEPIVGRAMGAAFADALVAVLRAAC 593          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S2V5Q7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5Q7_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.690e-49
Identity = 111/286 (38.81%), Postives = 160/286 (55.94%), Query Frame = 1
Query:   94 RPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAH-------VEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDA 930
            +P++  + LP +   E           +R +  E +++  + +A +   CR  G T+S AL+AA LMA SDVAH         GS  +  YKFL++VDLRRFG    S   DWT G VACAGGA+D+VV V+     + A E    +    +  FW LA+ C+    + +    +RE VA+FDW M+ + I   +  E+ + K LGR +TCGVSNMG Y      G+++L+ +HY TS +  G+L+QLSCGTV  EL +T QF EP+VTR   K F +     +D+
Sbjct:  321 QPELAEEELPAIVPEEYLSK-------NRNTFIELATLKASKLAALRDLCRREGVTVSAALAAASLMATSDVAHDTTXXXXTRGSPKSQLYKFLLSVDLRRFGD---SSGADWTKGAVACAGGAVDFVVPVTE----KAASEFLHGDSTQMKG-FWDLARTCRKEALEFIGTNFVRETVAMFDWGMKYVDIGEIMNDEADSKKALGRLFTCGVSNMGVYK-GHDYGSINLEKIHYATSHTITGTLYQLSCGTVNSELHLTFQFTEPLVTRQEGKEFCEKFCAIIDS 590          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S0LLM9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LLM9_9EUKA)

HSP 1 Score: 144 bits (363), Expect = 2.900e-36
Identity = 99/306 (32.35%), Postives = 163/306 (53.27%), Query Frame = 1
Query:   37 RFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHV-----EGSRGANPYKFLMAVDLRRFGTGEYS----GSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEA-EMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNL 924
            R R  TL Y   Q +A  A   +LP+ +P        G++  + +  R++A  F+ +S    A + Q CRA G T+SGA++AA L+A SD         +G+     YK L A+++R +G  +      GS DW+ G+V    G++D +V ++ GSG  L   + +A + + A    WS A++C   TR  +     RE++ +F    E M++   +++ +++  TLGRAY+CG SN+G Y   +   +LSL+ + +G SQS       LSC TV G L +T+Q+  P+ +   A AF + + KN+
Sbjct:  103 RVRLATLSYAGFQLSAGGA--PVLPNWVP---PPSKIGEE--MHLRERRTASIFAMVSSKSTASLRQRCRANGVTISGAVNAAALLAASDALGAVEKDEDGALKRLRYKLLQAINMRPYGGSDGGISGDGSRDWSAGSVLAGTGSLDLLVDLTPGSGRDLLDRVAQAPQASNALSTLWSTAKECNEQTRRWIDNGWPRESLVLFGAGWEFMNMNRVVELSAQDCSTLGRAYSCGTSNVGVYAHQSTGADLSLRRIFFGISQSVSAPAISLSCVTVDGGLCLTVQYCTPIWSNEQACAFTETL-KNI 400          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S4EXC7_CHRCT (Hypothetical protein n=4 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EXC7_CHRCT)

HSP 1 Score: 118 bits (295), Expect = 3.090e-27
Identity = 88/312 (28.21%), Postives = 148/312 (47.44%), Query Frame = 1
Query:   67 WEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDV---AHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDD----WTGGTVACAGGAIDYVVGVS--AGSGLRLAGELGEAE-----------MNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDAGCCI 942
            W+ +A   A    LPD  P  +E    GD+    V +R++   F  +  A    +  ACRARG T+SG L AA L++ SD       +G    + YK L A+++R FG     G  D    W+ G+V    G++D +V +   +G+ +R A E   +            M    +  W  A  C   TR  +     RE++ +F    E M++   +++ +++A +LGRAY+C  SN+G +   T  G++ L+++ +G SQ+        S  TV G L +T Q+ +P+ + + A  F   V + +    C+
Sbjct:    3 WQISAGGAA---ALPDWTPPPQE---IGDE--YHVKNRRTGAVFRCLDAAQTTALRDACRARGVTISGLLCAAALLSASDAMGGGKEDGKGEPSTYKLLQALNMRPFGKDTPKGGGDKGADWSKGSVVAGTGSLDLIVKLQPRSGAAVRRAAEAARSNDDDDGDGHASLMAGCLDLLWDTAADCNAQTRRWISSGWPRESLLLFAAGWEFMNMNRVVELSAQDATSLGRAYSCACSNVGVFNQGTVHGDIRLRSVFFGISQTVSAPSISTSSVTVDGLLCLTTQYCKPIWSDAQAADFADSVCELMRLAACL 306          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S2B0Z3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B0Z3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.790e-24
Identity = 82/276 (29.71%), Postives = 135/276 (48.91%), Query Frame = 1
Query:  169 VTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANP-------YKFLMAVDLRRFGTGEYSGSDDWTGG-TVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPF-------------DTQ-VGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDA 930
               R+S+  F+++ +  +  + +A + +G T+  AL+AA   +C      + + G +        +K L ++D+RRF       S DWT   T++C  G++D +V  +  +   L+    E    +AREEFW  A  CK      +       AV VFD A ++M +   +++ + +  +LGRAY+CGVSN G YP+             DT+ V +  L ++ Y TS    GSLFQ+SC T+ G L + L    P+V  + A  +L      L+A
Sbjct:  156 AAQRRSSMRFATVDKKTLGALRKAAKIKGTTVGAALAAAAAFSCMRTFPGDDNTGESDKETSSMTFKVLQSLDMRRFA------SSDWTDTETLSCHAGSMDLMVTPTFATAKALSSRNSE---ESAREEFWEAAASCKDQLGQFIGSGFGPAAVRVFDLASQSMEMSRLVELNADSPLSLGRAYSCGVSNAGVYPWPSSHSSSYIDPASDTKRVRSAELTSVLYATSHVHAGSLFQMSCVTLEGVLHICLNTVRPLVPDAAADIYLASFVNTLEA 422          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7R9YF98_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF98_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.930e-24
Identity = 82/249 (32.93%), Postives = 126/249 (50.60%), Query Frame = 1
Query:  166 GVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETI-REAVAVFDWAMENMSIWASIQIESR-NAKTLGRAYTCGVSNMGRYPF--DTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAF 900
            G  +R +  EF  +    V E++  CR  G T++GAL AA   A +        +  +  + LM++D+RRFG GE     DWT  T+ACAGGA D+V+  +              E +A     W LA++ +    D ++   + +E+V +FD     + +   ++ E R N  TLGRAY+ GVSN G +           +++ ++YGTS +  G LFQLS  TV G L +T Q   P+V+   AK+F
Sbjct:  224 GFRNRNTRVEFEVLDAGLVKELVARCRREGTTVTGALVAAVWRAAARSIETPSEK-VDKLRVLMSLDMRRFGQGE----GDWTQATMACAGGATDFVLRANP-------------ETSA-----WDLAREARARITDFIESPWLPQESVRLFDVGSRMLDMVQIVKSEGRDNLNTLGRAYSVGVSNAGLFSKGPSAPADRWAVRNVYYGTSHTHTGCLFQLSAVTVEGSLCLTFQTPAPIVSEEEAKSF 449          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: W7TVP6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVP6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.430e-21
Identity = 71/223 (31.84%), Postives = 114/223 (51.12%), Query Frame = 1
Query:  163 LGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANP----------------YKFLMAVDLRRFGT-----GEYSGSDD---WTGGTVACAGGAIDYVVGV--SAGSGLRLAGEL--GEAEMNAAREE--------FWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMG 723
            L   +R++ CEF ++    ++ +  AC++RG T++ AL AA L A SD AH +   G  P                Y+ L+++++R FG      G   G ++   W    VA A GA+D++V +    GS L L  +   G  E N   E+        FW+L ++C+    D ++   + E+V +FDW M+ + +   ++ E+ N +T GRAYTCGVSNMG
Sbjct:  400 LPAATRRTICEFRTLDSDSLSMLRAACKSRGVTVTAALCAAMLYATSDFAHGQDGGGGRPERGHKQQKGREGAYHNYRLLLSLNMRAFGRSRKDEGREGGGEEEKMWAEHAVASAAGAMDFMVRLPEQRGSTLSLRPKRTGGSEEANDGTEDGVWEGKRDFWALTKRCRRELVDFIEAGFVAESVQLFDWGMQTIELNDVVEKEAENPQTFGRAYTCGVSNMG 622          
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S1UC64_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC64_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.240e-20
Identity = 94/328 (28.66%), Postives = 144/328 (43.90%), Query Frame = 1
Query:    1 PPTMEAAVF---EAP---------RFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAH-VEGSRGA----NPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETI-REAVAVFDWAMENMSIWASIQIE-SRNAKTLGRAYTCGVSNMGRYPFDTQVGN-LSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNL 924
            PP++E AV     AP          F   TL Y + Q     +   +LP  +  ++  E   D+   G + R +  + + +   +   +L    A G T++GA  AA  +A  D      G   A    N  + LM++D+RRFG G  +  +DWT GT+AC GGA D+V          LA   GE+         W LA+  +    D +       E+V +FD     + +   ++ E S N  +LGR Y+ GVSN G +     V +   ++ +HY TS +  G LFQLS  TV     +T Q   P++    A  F+    + L
Sbjct:  270 PPSVEEAVLGPSHAPSPDFEGVVKNFSLATLRYGFFQIMNGASGAALLPPAVQALKPEER--DQQGYGFSKRSTRLQHAVLEPEEGKALLARSTAEGTTVTGAFVAAVTLAALDTLQKFSGDAAAGDVPNKLRILMSLDMRRFGRG--APQEDWTKGTMACGGGATDFV----------LAARDGESP--------WELARTARKRIVDFITDPDFPAESVRLFDIGSRFLDMPKFVKEEGSTNLASLGRGYSAGVSNTGVFRARASVDSAFQIRRVHYATSHTHTGCLFQLSAVTVDNNFCLTFQTPTPLLREEEAAYFVDNTVQRL 575          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JE30_9PHAE2.640e-15568.64Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JIH8_9PHAE2.710e-9272.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZIW7_9STRA6.060e-7044.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V5Q7_9STRA1.690e-4938.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0LLM9_9EUKA2.900e-3632.35Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4EXC7_CHRCT3.090e-2728.21Hypothetical protein n=4 Tax=Chrysotila carterae T... [more]
A0A7S2B0Z3_9STRA2.790e-2429.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9YF98_9STRA2.930e-2432.93Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TVP6_9STRA4.430e-2131.84Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1UC64_9STRA2.240e-2028.66Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20137contigH-elongata_contig20137:2..1725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score493.0
Seed ortholog evalue1e-136
Seed eggNOG ortholog2880.D7G762
EggNOG OGs29PU5@1,2RX60@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010900.3
Exons4
Model size960
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20137.5679.1prot_H-elongata_contig20137.5679.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20137 11..1725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.9839458-UTR-H-elongata_contig20137:1..101622930132.9839458-UTR-H-elongata_contig20137:1..10Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20137 2..10 +
1691679293.3834832-UTR-H-elongata_contig20137:1..101691679293.3834832-UTR-H-elongata_contig20137:1..10Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20137 2..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930133.0002446-CDS-H-elongata_contig20137:10..2461622930133.0002446-CDS-H-elongata_contig20137:10..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20137 11..246 +
1691679293.3990707-CDS-H-elongata_contig20137:10..2461691679293.3990707-CDS-H-elongata_contig20137:10..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20137 11..246 +
1622930133.0110614-CDS-H-elongata_contig20137:464..8181622930133.0110614-CDS-H-elongata_contig20137:464..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20137 465..818 +
1691679293.409296-CDS-H-elongata_contig20137:464..8181691679293.409296-CDS-H-elongata_contig20137:464..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20137 465..818 +
1622930133.0263124-CDS-H-elongata_contig20137:1118..12631622930133.0263124-CDS-H-elongata_contig20137:1118..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20137 1119..1263 +
1691679293.4176445-CDS-H-elongata_contig20137:1118..12631691679293.4176445-CDS-H-elongata_contig20137:1118..1263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20137 1119..1263 +
1622930133.0434694-CDS-H-elongata_contig20137:1509..17251622930133.0434694-CDS-H-elongata_contig20137:1509..1725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20137 1510..1725 +
1691679293.4253795-CDS-H-elongata_contig20137:1509..17251691679293.4253795-CDS-H-elongata_contig20137:1509..1725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20137 1510..1725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20137.5679.1

>prot_H-elongata_contig20137.5679.1 ID=prot_H-elongata_contig20137.5679.1|Name=mRNA_H-elongata_contig20137.5679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MEAAVFEAPRFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKG
PLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDV
AHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVV
GVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAV
AVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLS
LKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQG
VAKNLDAGCCIPKQIQ*
back to top

mRNA from alignment at H-elongata_contig20137:2..1725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20137.5679.1 ID=mRNA_H-elongata_contig20137.5679.1|Name=mRNA_H-elongata_contig20137.5679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1724bp|location=Sequence derived from alignment at H-elongata_contig20137:2..1725+ (Himanthalia elongata Himel1 dioecious)
CCACCGACCATGGAGGCGGCGGTTTTTGAAGCACCGCGTTTTCGAGCCAA TACGTTAGGGTACCTGTGGGAACAAGCCGCCGCGGCAATCGCGCGCCCCA AGATTTTACCGGACGGGCTTCCGTGTGTTGAGGAGAGAGAAAATGCGGGT GATAAAGGGCCGCTCGGCGTGACCAGCCGGAAGAGTGCGTGCGAATTTTC ATCGATCTCCCGCGCGGACGTCGCGGAGATGTTGCAGGCGTGCAGGTGCA TGTGTATGAGGAAAGTTCGTTGTGTGATCAGTAGCAAAATTCTTGCTGTT GGGGAAAATGACGGTGATAGCTGCTTGATTGTTTCCTCCGGGGTACATGG GTCGGTTCTTGTCTACGAAGTCCCTTGGAGCAAACTCTTGGTGTCTGTGT CACCCGATATACTCCTTGTCTACAGTGCCTGAAACTCGACAACCCCTAAA ACTCGGCGAACAGGGCTCGTGGCCAGACGCTATCGGGAGCGCTGAGTGCC GCCTGTCTAATGGCGTGCAGCGACGTGGCTCACGTTGAAGGTAGCCGTGG GGCTAACCCATACAAGTTTTTGATGGCCGTGGACCTCCGGCGCTTTGGCA CTGGAGAATATTCTGGTAGCGACGACTGGACGGGGGGTACAGTGGCGTGT GCTGGGGGGGCAATCGACTATGTTGTTGGCGTTTCTGCAGGGAGCGGGCT GAGACTTGCGGGAGAATTGGGCGAGGCGGAGATGAACGCCGCTCGTGAAG AGTTCTGGAGTCTGGCCCAGAAATGCAAGACGGCCACGAGGGATATGGTG AAGAAGGAAACGATCAGGTGATGCTTAAAGCCGGCGGGGCTAGATCTTCG TTCGTGCTCATCCCTCACGGCTACGGTCCCGGTGCGTCGTTTTGCAGAGT TCGTGAACTGTCGGCGTATTTAATCTGACCTTACTTGCTATTCCGAGACT GACAGCGTCAAATGGCACCAGGGATGCAACTCGTAGACTTGGGCGATCTT TCGTAGAGTTGTGTAAACTTGACACAAGCTAATGCTGGCGTACCAAACCG ATTTCATTACCATCGGACGCCGCGCCATTTCTTCTCGTCACCCCTTTGTG GAAAAATTATCCTCCAGGGAAGCCGTCGCGGTGTTTGACTGGGCCATGGA AAATATGAGCATATGGGCGTCCATCCAAATCGAGAGCCGGAACGCCAAGA CTCTAGGGCGAGCTTACACCTGCGGTGTCAGTAACATGGGACGCTACCCG TTCGACACTCAGGTGTGCACTATCGCCACTGGCCCGGGTGGGAATTCATT AATTCCATGTGATATTGAGGCCATCATGGTGTGTTTTTCTGTGAATTTCC TAATAGCACCGTCATCGATGACTGTATATAGAGCTGTGTCAACGTTGCGG GGCATACCAACGAGATGCGGGGTCGACCCCCTGGGTAGCGCGATATGGCG CATGACGTCATCGAACGAAGAAAACCTCTCATAGACGCACCGGTGCTGGC CGTAACAGGTTGGAAATCTCTCCCTGAAGGCTTTACACTACGGCACGAGT CAGTCTGCATGCGGCAGCCTGTTTCAGCTGAGCTGCGGCACAGTGGGCGG CGAGCTTTTCATGACCCTGCAGTTCGCGGAGCCGGTTGTTACTCGGTCAA TGGCGAAGGCATTTTTGCAGGGCGTTGCCAAAAATCTCGACGCTGGGTGC TGCATCCCGAAGCAGATTCAATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20137:2..1725+

>mRNA_H-elongata_contig20137.5679.1 ID=mRNA_H-elongata_contig20137.5679.1|Name=mRNA_H-elongata_contig20137.5679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig20137:2..1725+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGCGGCGGTTTTTGAAGCACCGCGTTTTCGAGCCAATACGTTAGG
GTACCTGTGGGAACAAGCCGCCGCGGCAATCGCGCGCCCCAAGATTTTAC
CGGACGGGCTTCCGTGTGTTGAGGAGAGAGAAAATGCGGGTGATAAAGGG
CCGCTCGGCGTGACCAGCCGGAAGAGTGCGTGCGAATTTTCATCGATCTC
CCGCGCGGACGTCGCGGAGATGTTGCAGGCGTGCAGATGGAGGCGGCGGT
TTTTGAAGCACCGCGTTTTCGAGCCAATACGTTAGGGTACCTGTGGGAAC
AAGCCGCCGCGGCAATCGCGCGCCCCAAGATTTTACCGGACGGGCTTCCG
TGTGTTGAGGAGAGAGAAAATGCGGGTGATAAAGGGCCGCTCGGCGTGAC
CAGCCGGAAGAGTGCGTGCGAATTTTCATCGATCTCCCGCGCGGACGTCG
CGGAGATGTTGCAGGCGTGCAGGGCTCGTGGCCAGACGCTATCGGGAGCG
CTGAGTGCCGCCTGTCTAATGGCGTGCAGCGACGTGGCTCACGTTGAAGG
TAGCCGTGGGGCTAACCCATACAAGTTTTTGATGGCCGTGGACCTCCGGC
GCTTTGGCACTGGAGAATATTCTGGTAGCGACGACTGGACGGGGGGTACA
GTGGCGTGTGCTGGGGGGGCAATCGACTATGTTGTTGGCGTTTCTGCAGG
GAGCGGGCTGAGACTTGCGGGAGAATTGGGCGAGGCGGAGATGAACGCCG
CTCGTGAAGAGTTCTGGAGTCTGGCCCAGAAATGCAAGACGGCCACGAGG
GATATGGTGAAGAAGGAAACGATCAGGGCTCGTGGCCAGACGCTATCGGG
AGCGCTGAGTGCCGCCTGTCTAATGGCGTGCAGCGACGTGGCTCACGTTG
AAGGTAGCCGTGGGGCTAACCCATACAAGTTTTTGATGGCCGTGGACCTC
CGGCGCTTTGGCACTGGAGAATATTCTGGTAGCGACGACTGGACGGGGGG
TACAGTGGCGTGTGCTGGGGGGGCAATCGACTATGTTGTTGGCGTTTCTG
CAGGGAGCGGGCTGAGACTTGCGGGAGAATTGGGCGAGGCGGAGATGAAC
GCCGCTCGTGAAGAGTTCTGGAGTCTGGCCCAGAAATGCAAGACGGCCAC
GAGGGATATGGTGAAGAAGGAAACGATCAGGGAAGCCGTCGCGGTGTTTG
ACTGGGCCATGGAAAATATGAGCATATGGGCGTCCATCCAAATCGAGAGC
CGGAACGCCAAGACTCTAGGGCGAGCTTACACCTGCGGTGTCAGTAACAT
GGGACGCTACCCGTTCGACACTCAGGGAAGCCGTCGCGGTGTTTGACTGG
GCCATGGAAAATATGAGCATATGGGCGTCCATCCAAATCGAGAGCCGGAA
CGCCAAGACTCTAGGGCGAGCTTACACCTGCGGTGTCAGTAACATGGGAC
GCTACCCGTTCGACACTCAGGTTGGAAATCTCTCCCTGAAGGCTTTACAC
TACGGCACGAGTCAGTCTGCATGCGGCAGCCTGTTTCAGCTGAGCTGCGG
CACAGTGGGCGGCGAGCTTTTCATGACCCTGCAGTTCGCGGAGCCGGTTG
TTACTCGGTCAATGGCGAAGGCATTTTTGCAGGGCGTTGCCAAAAATCTC
GACGCTGGGTGCTGCATCCCGAAGCAGATTCAATAGGTTGGAAATCTCTC
CCTGAAGGCTTTACACTACGGCACGAGTCAGTCTGCATGCGGCAGCCTGT
TTCAGCTGAGCTGCGGCACAGTGGGCGGCGAGCTTTTCATGACCCTGCAG
TTCGCGGAGCCGGTTGTTACTCGGTCAATGGCGAAGGCATTTTTGCAGGG
CGTTGCCAAAAATCTCGACGCTGGGTGCTGCATCCCGAAGCAGATTCAAT
AG
back to top