mRNA_H-elongata_contig20137.5679.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A6H5JE30_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE30_9PHAE) HSP 1 Score: 457 bits (1175), Expect = 2.640e-155 Identity = 232/338 (68.64%), Postives = 263/338 (77.81%), Query Frame = 1
Query: 1 PPTMEAAVFEAPRFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQV------------------------GNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDAGCCI 942
PP+MEAA+ E RFR NTL Y+W QA AIA+P +LPDGLP V+ER GD+GP GV+SRKSACEFSS+ DV+ MLQACR RG TLSGALSAACLMACSDVAH EGSRG+N YKFL+AVDLRRFGTG+YS DWTGGTVACAGG+IDY V V AGSG L G GE AREEFW LA++CKTAT+DMV+KET+REAVAVFDWAMEN+ IWAS+ ++SRNAKTLGRAYTCGVSNMGRYPFDTQV GNLSLKA+HYGTSQSA GSLFQLSCGT+ GELFMTLQFAEP+VTR +A+L+G+ N+ A C I
Sbjct: 244 PPSMEAAIVEGKRFRINTLRYMWRQATVAIAKPMVLPDGLPSVDERSEGGDEGPFGVSSRKSACEFSSVPADDVSAMLQACRERGLTLSGALSAACLMACSDVAHAEGSRGSNRYKFLLAVDLRRFGTGDYSDMGDWTGGTVACAGGSIDYAVTVPAGSGSMLVGRDGEEAARVAREEFWRLAKRCKTATQDMVEKETLREAVAVFDWAMENIHIWASVDMQSRNAKTLGRAYTCGVSNMGRYPFDTQVRSPFGTGVRSVSSPFLLVGATMCVGNLSLKAVHYGTSQSARGSLFQLSCGTIDGELFMTLQFAEPLVTREAGQAYLRGIIDNVRAACGI 581
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A6H5JIH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH8_9PHAE) HSP 1 Score: 290 bits (741), Expect = 2.710e-92 Identity = 145/200 (72.50%), Postives = 163/200 (81.50%), Query Frame = 1
Query: 1 PPTMEAAVFEAPRFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIR 600
PP+MEAA+ E RFR NTL Y+W+QA AIA+P +LPDGLP V+ER GD+GP GV+SRKSACEFSS+ DV+ MLQACR RG TLSGALSAACLMACSDVAH EGSRG N YKFL+AVDLRRFGTG+YS DWTGGTVACAGGAIDY V V AGSG RLAG GE AREEFW LA++CKTAT+DMV+KET+R
Sbjct: 222 PPSMEAAIVEGKRFRINTLRYMWDQATVAIAKPMVLPDGLPSVDERSEGGDEGPFGVSSRKSACEFSSVPADDVSAMLQACRERGLTLSGALSAACLMACSDVAHAEGSRGLNLYKFLLAVDLRRFGTGDYSDMGDWTGGTVACAGGAIDYAVTVPAGSGSRLAGRDGEEAARVAREEFWRLAKRCKTATQDMVEKETLR 421
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A835ZIW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIW7_9STRA) HSP 1 Score: 237 bits (605), Expect = 6.060e-70 Identity = 146/327 (44.65%), Postives = 185/327 (56.57%), Query Frame = 1
Query: 1 PPTME-AAVFEAPRFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANPYKFLMAVDLRRFGTG----------EYSGSD----DWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDAGC 936
PP++E A V E +F T YL +QAA+ + P+++ D LP E R +R++ CE ++ ++ L ACR +G TL+ ALSAA L+ACSDVAH +GS + YKFL+AVDLR FG G G++ DWT G VACAGGA+D+V G+ A SG L AE + FW LA++ + T REA AVFDW M + I + E+R TLGRAYTCGVSNMGRY G + ALHY TS S GSL+QLSCGTVGG L MT QFAEP+V R+M AF + L A C
Sbjct: 277 PPSIEDATVAEPGKFGLGTARYLLKQAASGVFGPRLVHDHLPPPERRATPA----FAPEARRTICEVRALEADELQAALAACRQKGLTLTAALSAAALLACSDVAHADGSDAWHNYKFLLAVDLRPFGAGAPGHQGKPNANGGGAEARALDWTEGAVACAGGAMDWVAGLPANSGRALVSGAAGAERD-----FWRLARRARGEMAAFAASGTAREAAAVFDWGMRAIEIGDVCEREARRPATLGRAYTCGVSNMGRYAHAATTG-ARVAALHYATSHSPWGSLYQLSCGTVGGRLCMTFQFAEPIVGRAMGAAFADALVAVLRAAC 593
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S2V5Q7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5Q7_9STRA) HSP 1 Score: 183 bits (464), Expect = 1.690e-49 Identity = 111/286 (38.81%), Postives = 160/286 (55.94%), Query Frame = 1
Query: 94 RPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAH-------VEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDA 930
+P++ + LP + E +R + E +++ + +A + CR G T+S AL+AA LMA SDVAH GS + YKFL++VDLRRFG S DWT G VACAGGA+D+VV V+ + A E + + FW LA+ C+ + + +RE VA+FDW M+ + I + E+ + K LGR +TCGVSNMG Y G+++L+ +HY TS + G+L+QLSCGTV EL +T QF EP+VTR K F + +D+
Sbjct: 321 QPELAEEELPAIVPEEYLSK-------NRNTFIELATLKASKLAALRDLCRREGVTVSAALAAASLMATSDVAHDTTXXXXTRGSPKSQLYKFLLSVDLRRFGD---SSGADWTKGAVACAGGAVDFVVPVTE----KAASEFLHGDSTQMKG-FWDLARTCRKEALEFIGTNFVRETVAMFDWGMKYVDIGEIMNDEADSKKALGRLFTCGVSNMGVYK-GHDYGSINLEKIHYATSHTITGTLYQLSCGTVNSELHLTFQFTEPLVTRQEGKEFCEKFCAIIDS 590
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S0LLM9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LLM9_9EUKA) HSP 1 Score: 144 bits (363), Expect = 2.900e-36 Identity = 99/306 (32.35%), Postives = 163/306 (53.27%), Query Frame = 1
Query: 37 RFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHV-----EGSRGANPYKFLMAVDLRRFGTGEYS----GSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEA-EMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNL 924
R R TL Y Q +A A +LP+ +P G++ + + R++A F+ +S A + Q CRA G T+SGA++AA L+A SD +G+ YK L A+++R +G + GS DW+ G+V G++D +V ++ GSG L + +A + + A WS A++C TR + RE++ +F E M++ +++ +++ TLGRAY+CG SN+G Y + +LSL+ + +G SQS LSC TV G L +T+Q+ P+ + A AF + + KN+
Sbjct: 103 RVRLATLSYAGFQLSAGGA--PVLPNWVP---PPSKIGEE--MHLRERRTASIFAMVSSKSTASLRQRCRANGVTISGAVNAAALLAASDALGAVEKDEDGALKRLRYKLLQAINMRPYGGSDGGISGDGSRDWSAGSVLAGTGSLDLLVDLTPGSGRDLLDRVAQAPQASNALSTLWSTAKECNEQTRRWIDNGWPRESLVLFGAGWEFMNMNRVVELSAQDCSTLGRAYSCGTSNVGVYAHQSTGADLSLRRIFFGISQSVSAPAISLSCVTVDGGLCLTVQYCTPIWSNEQACAFTETL-KNI 400
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S4EXC7_CHRCT (Hypothetical protein n=4 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EXC7_CHRCT) HSP 1 Score: 118 bits (295), Expect = 3.090e-27 Identity = 88/312 (28.21%), Postives = 148/312 (47.44%), Query Frame = 1
Query: 67 WEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDV---AHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDD----WTGGTVACAGGAIDYVVGVS--AGSGLRLAGELGEAE-----------MNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPFDTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDAGCCI 942
W+ +A A LPD P +E GD+ V +R++ F + A + ACRARG T+SG L AA L++ SD +G + YK L A+++R FG G D W+ G+V G++D +V + +G+ +R A E + M + W A C TR + RE++ +F E M++ +++ +++A +LGRAY+C SN+G + T G++ L+++ +G SQ+ S TV G L +T Q+ +P+ + + A F V + + C+
Sbjct: 3 WQISAGGAA---ALPDWTPPPQE---IGDE--YHVKNRRTGAVFRCLDAAQTTALRDACRARGVTISGLLCAAALLSASDAMGGGKEDGKGEPSTYKLLQALNMRPFGKDTPKGGGDKGADWSKGSVVAGTGSLDLIVKLQPRSGAAVRRAAEAARSNDDDDGDGHASLMAGCLDLLWDTAADCNAQTRRWISSGWPRESLLLFAAGWEFMNMNRVVELSAQDATSLGRAYSCACSNVGVFNQGTVHGDIRLRSVFFGISQTVSAPSISTSSVTVDGLLCLTTQYCKPIWSDAQAADFADSVCELMRLAACL 306
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S2B0Z3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B0Z3_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.790e-24 Identity = 82/276 (29.71%), Postives = 135/276 (48.91%), Query Frame = 1
Query: 169 VTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANP-------YKFLMAVDLRRFGTGEYSGSDDWTGG-TVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMGRYPF-------------DTQ-VGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNLDA 930
R+S+ F+++ + + + +A + +G T+ AL+AA +C + + G + +K L ++D+RRF S DWT T++C G++D +V + + L+ E +AREEFW A CK + AV VFD A ++M + +++ + + +LGRAY+CGVSN G YP+ DT+ V + L ++ Y TS GSLFQ+SC T+ G L + L P+V + A +L L+A
Sbjct: 156 AAQRRSSMRFATVDKKTLGALRKAAKIKGTTVGAALAAAAAFSCMRTFPGDDNTGESDKETSSMTFKVLQSLDMRRFA------SSDWTDTETLSCHAGSMDLMVTPTFATAKALSSRNSE---ESAREEFWEAAASCKDQLGQFIGSGFGPAAVRVFDLASQSMEMSRLVELNADSPLSLGRAYSCGVSNAGVYPWPSSHSSSYIDPASDTKRVRSAELTSVLYATSHVHAGSLFQMSCVTLEGVLHICLNTVRPLVPDAAADIYLASFVNTLEA 422
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7R9YF98_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF98_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.930e-24 Identity = 82/249 (32.93%), Postives = 126/249 (50.60%), Query Frame = 1
Query: 166 GVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETI-REAVAVFDWAMENMSIWASIQIESR-NAKTLGRAYTCGVSNMGRYPF--DTQVGNLSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAF 900
G +R + EF + V E++ CR G T++GAL AA A + + + + LM++D+RRFG GE DWT T+ACAGGA D+V+ + E +A W LA++ + D ++ + +E+V +FD + + ++ E R N TLGRAY+ GVSN G + +++ ++YGTS + G LFQLS TV G L +T Q P+V+ AK+F
Sbjct: 224 GFRNRNTRVEFEVLDAGLVKELVARCRREGTTVTGALVAAVWRAAARSIETPSEK-VDKLRVLMSLDMRRFGQGE----GDWTQATMACAGGATDFVLRANP-------------ETSA-----WDLAREARARITDFIESPWLPQESVRLFDVGSRMLDMVQIVKSEGRDNLNTLGRAYSVGVSNAGLFSKGPSAPADRWAVRNVYYGTSHTHTGCLFQLSAVTVEGSLCLTFQTPAPIVSEEEAKSF 449
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: W7TVP6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVP6_9STRA) HSP 1 Score: 104 bits (259), Expect = 4.430e-21 Identity = 71/223 (31.84%), Postives = 114/223 (51.12%), Query Frame = 1
Query: 163 LGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAHVEGSRGANP----------------YKFLMAVDLRRFGT-----GEYSGSDD---WTGGTVACAGGAIDYVVGV--SAGSGLRLAGEL--GEAEMNAAREE--------FWSLAQKCKTATRDMVKKETIREAVAVFDWAMENMSIWASIQIESRNAKTLGRAYTCGVSNMG 723
L +R++ CEF ++ ++ + AC++RG T++ AL AA L A SD AH + G P Y+ L+++++R FG G G ++ W VA A GA+D++V + GS L L + G E N E+ FW+L ++C+ D ++ + E+V +FDW M+ + + ++ E+ N +T GRAYTCGVSNMG
Sbjct: 400 LPAATRRTICEFRTLDSDSLSMLRAACKSRGVTVTAALCAAMLYATSDFAHGQDGGGGRPERGHKQQKGREGAYHNYRLLLSLNMRAFGRSRKDEGREGGGEEEKMWAEHAVASAAGAMDFMVRLPEQRGSTLSLRPKRTGGSEEANDGTEDGVWEGKRDFWALTKRCRRELVDFIEAGFVAESVQLFDWGMQTIELNDVVEKEAENPQTFGRAYTCGVSNMG 622
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Match: A0A7S1UC64_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC64_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.240e-20 Identity = 94/328 (28.66%), Postives = 144/328 (43.90%), Query Frame = 1
Query: 1 PPTMEAAVF---EAP---------RFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGPLGVTSRKSACEFSSISRADVAEMLQACRARGQTLSGALSAACLMACSDVAH-VEGSRGA----NPYKFLMAVDLRRFGTGEYSGSDDWTGGTVACAGGAIDYVVGVSAGSGLRLAGELGEAEMNAAREEFWSLAQKCKTATRDMVKKETI-REAVAVFDWAMENMSIWASIQIE-SRNAKTLGRAYTCGVSNMGRYPFDTQVGN-LSLKALHYGTSQSACGSLFQLSCGTVGGELFMTLQFAEPVVTRSMAKAFLQGVAKNL 924
PP++E AV AP F TL Y + Q + +LP + ++ E D+ G + R + + + + + +L A G T++GA AA +A D G A N + LM++D+RRFG G + +DWT GT+AC GGA D+V LA GE+ W LA+ + D + E+V +FD + + ++ E S N +LGR Y+ GVSN G + V + ++ +HY TS + G LFQLS TV +T Q P++ A F+ + L
Sbjct: 270 PPSVEEAVLGPSHAPSPDFEGVVKNFSLATLRYGFFQIMNGASGAALLPPAVQALKPEER--DQQGYGFSKRSTRLQHAVLEPEEGKALLARSTAEGTTVTGAFVAAVTLAALDTLQKFSGDAAAGDVPNKLRILMSLDMRRFGRG--APQEDWTKGTMACGGGATDFV----------LAARDGESP--------WELARTARKRIVDFITDPDFPAESVRLFDIGSRFLDMPKFVKEEGSTNLASLGRGYSAGVSNTGVFRARASVDSAFQIRRVHYATSHTHTGCLFQLSAVTVDNNFCLTFQTPTPLLREEEAAYFVDNTVQRL 575 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20137.5679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20137.5679.1 >prot_H-elongata_contig20137.5679.1 ID=prot_H-elongata_contig20137.5679.1|Name=mRNA_H-elongata_contig20137.5679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp MEAAVFEAPRFRANTLGYLWEQAAAAIARPKILPDGLPCVEERENAGDKGback to top mRNA from alignment at H-elongata_contig20137:2..1725+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20137.5679.1 ID=mRNA_H-elongata_contig20137.5679.1|Name=mRNA_H-elongata_contig20137.5679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1724bp|location=Sequence derived from alignment at H-elongata_contig20137:2..1725+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20137:2..1725+ >mRNA_H-elongata_contig20137.5679.1 ID=mRNA_H-elongata_contig20137.5679.1|Name=mRNA_H-elongata_contig20137.5679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig20137:2..1725+ (Himanthalia elongata Himel1 dioecious)back to top |