mRNA_H-elongata_contig201329.5678.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201329.5678.1
Unique NamemRNA_H-elongata_contig201329.5678.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 4.550e-65
Identity = 147/354 (41.53%), Postives = 189/354 (53.39%), Query Frame = 1
Query:   10 TSALYDNCISG--YIASIRNGWCDDENNNEECGYDGGDCCECTAVGTRSDNYFTDVLCLDPNSGCV-----STQVNSYPNCPGGYFPDIGDGSCDWENNNEGCDYDGGDCCDCNSGI--DESSSMFCVDPDDVCYSLAAVELQSKCIGRNIEY--------IGNSECNMENNSEECLYDGGDCCNCTNVGDNSSSSFSWTLF-CVDPNATCYDHAAVAL--LSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIRSDSYVYFLTDD----LCRDPNSGCVDHR--VEMYPNCNDGDIPSIGDGFCNLENNNKECFYDGGDCCDCTHIIDWYSSFN----SSFSLCVDP 981
            T  + ++C  G  Y+ASI +G+C DENNNE C YDGGDCCECT V       +    C+DP++ CV     +  +    +  GGY   +G+G C+  NN E CDYD GDCC C  GI  D+ S   CVD        A V+  + C+  ++           G+  CN  NN+E+C YDGGDCC CT V D  S+ F  T F C+DP A C D   V    L NC    I  +GDGYCD  NNN+ C+YDGGDCC CT   SDS    +  D    +C DP + C D    V+MY  C   D+  +GD  C   NN + C YD GDCC+ T  +D   + +    SSF+ CVDP
Sbjct:   57 TEDIAESCNDGGGYVASIGDGFCSDENNNEVCDYDGGDCCECTCVDAFYPCGYVAFACIDPSAACVDDDNITADIAESCHDGGGYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVD-------FACVDPNAPCVDDDVTEGMFEDCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVD-WSAEFGCTEFACIDPTAPCVDDDDVTADALENC---MIEYLGDGYCDTYNNNEICDYDGGDCCECT-CGSDSTDVLVGSDCSDFVCIDPTASCFDESITVDMYEYC---DVELLGDSICQPSNNFEVCDYDFGDCCEATCGVDSSGTLDELSCSSFA-CVDP 394          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.570e-64
Identity = 140/356 (39.33%), Postives = 189/356 (53.09%), Query Frame = 1
Query:   10 TSALYDNCISGYIASIRNGWCDDENNNEECGYDGGDCCECTAVGTRSDNY--FTDVLCLDPNSGCV---STQVNSYPNC--PGGYFPDIGDGSCDWENNNEGCDYDGGDCCDCNSGIDES------SSMFCVDPDDVCYS--LAAVELQSKC---IGRNIEYIGNSECNMENNSEECLYDGGDCCNCTNVGDNSSSSFSWTLFCVDPNATCY--DHAAVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIRSDSYVYFLTDDLCRDPNSGCV---DHRVEMYPNCNDGDIPSIGDGFCNLENNNKECFYDGGDCCDCT----HIIDWYSSFNSSFSLCVDPSQACY 996
            T  + ++C +    SI +G+C+ +NNNE C YDGGDCCECT   T ++    ++   C+DP + CV   S  V+   NC  PGG    IG+G CD +NNNE C YDGGDCC+C     E       ++  CVDP+  C       +++   C   +G     IG+  C+ + N+ EC YDGGDCC CT   D           C+DP A C   D   V +  NC      N+GDG+CDQ NNN+ C YDGGDCC CT        Y   +  C DP++ CV   D  ++M  NC  G +  IG+G+C+  NN +EC YDGGDCC CT    +  D+  S    +  C DPS +C+
Sbjct:  207 TVGMVESCDT---VSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAAPCVDDDSFTVDMIDNCEYPGG----IGNGWCDVDNNNELCAYDGGDCCECTCESLEDDDWACRNNFACVDPNAPCVDDDSVTIDMLENCPWAVG-----IGDGYCSEDLNTPECAYDGGDCCACTCQNDVDDDWXXXXFACIDPEAACVNDDDITVDMFVNCEYPV--NVGDGWCDQGNNNEACGYDGGDCCECTCENERDEDYRCMEFSCIDPSAPCVNDDDVTIDMVENC--GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCF 546          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 5.870e-60
Identity = 137/356 (38.48%), Postives = 182/356 (51.12%), Query Frame = 1
Query:   52 SIRNGWCDDENNNEECGYDGGDCCECTAV----GTRSDNYFTD----VLCLDPNSGCVSTQ------VNSYPNCPGGYFPDIGDGSCDWENNNEGCDYDGGDCCDCN-------------SGIDESSSMFCVDPDDVCYSLAAVELQSKCIGRNIEYIGNSECNMENNSEECLYDGGDCCNCT------NVGDNSSSSFSWTLF-CVDPNATCY--DHAAVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIRSDSYVYFLTDDLCRDPNSGCVDHRVEMYPNCND-GDIPSIGDGFCNLENNNKECFYDGGDCCDCT----HIIDWYSSFNSSFSLCVDPSQACY 996
            +I +G CD +NN EEC YDGGDCC CT      GT  D           C+DP++ CV+                GG    + DG CD  NNNE C YDGGDCC C              + ID S+   C D DDV      V+    C    +  IG+ +C+++NN EEC YDGGDCC+CT      + GD+ S     T+F C+DP+A C   D   V ++  C    IN  GDG+CD +NNNK C YD GDCC CT +   +Y   +    C DP++ CVD         +D G+  ++ +G+C+ +NN +EC YDGGDCC+CT     + D   S  S F  C DP+  C+
Sbjct:  103 AIGDGNCDKDNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAFLPEVVKETCGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRGFACIDPSAE--CADDDDV-----TVDTVENC---GVRSIGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTVFACIDPDAPCVNDDDITVDMMDTCGGHPIN-FGDGWCDDDNNNKECGYDSGDCCSCTCVDG-TYECGIVGFDCVDPSAECVDDDYPSTGVTDDCGNAGTVANGYCDFDNNKEECAYDGGDCCECTCEPSGLEDGSDSCTSGFD-CQDPTAPCF 445          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 5.010e-55
Identity = 129/316 (40.82%), Postives = 167/316 (52.85%), Query Frame = 1
Query:  100 GYDGGDCCECTAVGTRSDNYF---TD--VLCLDPNSGCVSTQ---VNSYPNCPGGYFP-DIGDGSCDWENNNEGCDYDGGDCCDC---NSGIDESS----------SMFCVDPDDVCYSLAAVELQSKCIGRNIEYIGNSECNMENNSEECLYDGGDCCNCT----NVGDNSSSSFSWT----LFCVDPNATCY--DHAAVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCT-----NIRSDSYVYFLTDDLCRDPNSGCVDH---RVEMYPNCNDGDIP-SIGDGFCNLENNNKECFYDGGDCCDCT 924
            G+DGGDCCECT V    D+Y    TD    C+DP + CV      +    NC    FP + GDG CD ENNNE C YDGGDCC+C   N+  D+ S          S  CVD DDV      V++   C    +  +GN  C+ ENN+E C YDGGDCC CT    +  D +   F         C+DPNA C   D   + ++ NC++  +   G+G+CD +NNN+ C YDGGDCC CT     N     +  F     C DP + CVD     V+M  +C     P S G+G+C+ +NN +EC YDGGDCC+CT
Sbjct:    5 GFDGGDCCECTCVSVYDDDYSCSSTDSGFACVDPTAPCVDDDDITIEQALNC----FPREFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANSACIDPSAPCVDDDDV-----TVDMVENC--GYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENCDSVAV---GNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFA----CIDPEAPCVDEDSFTVDMVESCK---YPGSFGNGWCDEDNNIEECAYDGGDCCECT 299          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 4.780e-48
Identity = 112/288 (38.89%), Postives = 149/288 (51.74%), Query Frame = 1
Query:   10 TSALYDNCISGYIASIRNGWCDDENNNEECGYDGGDCCECTAVGTRSDNYFT-DVLCLDPNSGCV---STQVNSYPNCPGGYFPDIGDGSCDWENNNEGCDYDGGDCCDCNSGI---DESSSMF--CVDPDDVCYSLAAVELQSKCIGRNIEY---IGNSECNMENNSEECLYDGGDCCNCTNVGDNSSSSFSWT---------LFCVDPNATCYDH--AAVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIRSDSYVYFLTDDL----CRDPNSGC 792
            T  + DNC   Y   I +GWCD++NNNE C YDGGDCCECT  G+  D++   +  C+DPN+ CV   S  ++   NC   +   IGDG C    N   C YDGGDCC C       D+   M+  C+DP+  C     + +    +  N EY   IGN  C+  NN E C YDGGDCC CT   +   S + W            C+DP+A C D     V ++ NC  G ++ IG+G+CD+ NN + C YDGGDCC CT        Y  + +     C+DPN+ C
Sbjct:   50 TVDMIDNCD--YPGGIGDGWCDEDNNNELCAYDGGDCCECTCEGSEDDDWHCRNFACVDPNAPCVDDDSVTIDMIENCS--WSTGIGDGYCSENLNTPECAYDGGDCCSCTCESPYDDDWGCMWFACIDPEAACVDDDDITVD---MFENCEYPVDIGNGWCDEANNIEACGYDGGDCCECTCEYE---SPYDWDDDWDYHCMEFACIDPSAPCVDDDDITVDMVENC--GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPNASC 325          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 8.580e-45
Identity = 112/303 (36.96%), Postives = 147/303 (48.51%), Query Frame = 1
Query:    4 AGTSALYDNCISGYIASIRNGWCDDENNNEECGYDGGDCCECTAV-GTRSDNYFTDVLCLDPNSGCV---STQVNSYPNCPGGYFPD-IGDGSCDWENNNEGCDYDGGDCCDC----------NSGIDESSSMF----CVDPDDVCYS--LAAVELQSKCIGRNIEYIGNSECNMENNSEECLYDGGDCCNCTNVGDNSSSSF---SWTLFCVDPNATCYDHAAVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIRSDSY--------VYFLTDDLCRDPNSGCVDHRVEMY 816
            A TS  +D C +     I NG C+  NN EECG+DGGDCCECT   G  +   +    C+DP++ CV   +  V+   NC   Y P  IG+G+CD   NNE C YDGGDCC+C          +SG+   + M+    C+DPD  C    +   E+   C   +   IGN  C+  NNS EC YDGGDCC CT    +    +     +  C+DP A C D          + G +  IGDG CD ENN + C +DGGDCC CT +   S         VY +    C D ++ C       Y
Sbjct:   83 ATTSDQFDACDA--AQDIGNGRCNMGNNIEECGFDGGDCCECTCEDGEYTCGQYYGYACIDPDATCVDDDAVTVDMMENC---YDPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLC---STGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECGFDGGDCCDCTCVVPSSAWSDYACQEVYNINSFDCLDTSASCYGEEHLSY 377          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.450e-43
Identity = 103/278 (37.05%), Postives = 146/278 (52.52%), Query Frame = 1
Query:   49 ASIRNGWCDDENNNEECGYDGGDCCECTAVGTRSDNYF-------TDVLCLDPNSGCVSTQ---VNSYPNCPGGYFPDIGDGSCDWENNNEGCDYDGGDCCDCNSGI----DESSSMF--------CVDPDDVCYSL--AAVELQSKCIGRNIEYIGNSECNMENNSEECLYDGGDCCNCTNVGDNSSSSFSWTLFCVDPNATCYDHAAVA--LLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCT--NIRSDSYVYFLTDDL--CRDPNSGC 792
            A   +G+C   NNN ECGYDGGDCCECT    +  ++        +   C+DP++ C +     V +   C    F D+GDG CD  NNNE C YDGGDCC+C   +    D  + ++        C+DP   C +     V++   C   +   +G+  C+M+NN+  C YDGGDCC CT   +N     S    C+DP A C D  +V   ++ NC+   +  +G+G+CD+ENNN+ C YDGGDCC CT  +  +D Y          C+DPN+ C
Sbjct:   34 ALYGDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQECD---FWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVDVDESC---DAVGMGDGYCDMDNNNAACAYDGGDCCECTCEPNNKCGGRSG-FACIDPGAPCVDDDSVTVDMIDNCD--YLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASC 302          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 3.880e-41
Identity = 133/380 (35.00%), Postives = 173/380 (45.53%), Query Frame = 1
Query:   13 SALYDNCISGYIASIRNGWCDDENNNEECGYDGGDCCECTAVGTRSDNYFTDVL--------CLDPN--SGCVSTQVNS----YPNCPGGYFPDIGDGSCDWENNNEGCDYDGGDCCDCNSGIDESSSMF---------CVDPD--DVCY------SLAAVELQSKCIGRNIEYIGNSECNMENNSEECLYDGGDCCNCTNVGDNSSSSFSWTLFCVDPNATCYDHAAVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIRSDSYVYFLTDDLCRDPNSGCVDHRVEMYPN-------------------CNDGDIPSIGDGFCNLENNNKECFYDGGDCCDCTHIIDWYSSFN-SSFSL-CVDPSQACY 996
            S+ Y  C+ GY   I++G+CD + NN ECG+DGGDCC CT  G  SD               CLDP+    C  T   +    YP+C   Y  +  DG CD   N   C YDGGDCC C    D SS  +         C+DPD    C       S AA     +C G  I  IG+  C+  NN+EEC +DGGDCC+CT  G    S  S+++ C DPNA C   +        +        DGYCD   N + C++DGGDCC           Y  +   C DP  GC D     Y +                   C DG + ++ DG C+  NNN  C YDGGDCC+C    D+  ++   +F   C+D +  CY
Sbjct:   61 SSEYLGCL-GYTNHIKDGYCDTDLNNAECGWDGGDCCACTC-GADSDEELAHPCGQLGDGYNCLDPDVPDDCGVTPSPAAAIGYPDCEE-YLYEWQDGVCDDNLNTAACGYDGGDCCRCTCR-DYSSWGYSTCGYYGYDCMDPDAPSACSTDSPTPSPAAGTDWPECEGY-IYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSYYYSCSSYSMDCQDPNANCTTPSPTPYCPFAS--------DGYCDSYYNTEDCDWDGGDCC----------AYGCSSTTCLDPIYGC-DSITTSYGDSDDSTSTFITYTTSSDDSGCFDG-VWAVSDGKCDSGNNNAACDYDGGDCCECD-CYDYGEAYECGAFGYYCLDQTSICY 414          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.360e-40
Identity = 127/382 (33.25%), Postives = 166/382 (43.46%), Query Frame = 1
Query:   13 SALYDNCISGYIASIRNGWCDDENNNEECGYDGGDCCECTAVGTRSDNYFTDVL--------CLDPN--SGCVSTQVNS----YPNCPGGYFPDIGDGSCDWENNNEGCDYDGGDCCDCNSGIDESSSMF---------CVDPDDVCYSLAAVELQSKCIGRN-------IEYIGNSECNMENNSEECLYDGGDCCNCTNVGDNSSSSFSWTLFCVDPNATCYDHAAVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIRSDSYVYFLTDDLCRDPNSGCV-------DHRVE---------------MYPNCNDGDIPSIGDGFCNLENNNKECFYDGGDCCDCTHIIDWYSSFNSSFS--LCVDPSQACY 996
            S  Y  C+ GY   I++G+CD + NN ECG+DGGDCC CT  G+ SD               CLDP+    C  T   +    YP+C   Y  +  DG CD   N   C YDGGDCC C      S   +         C+DPD            S   G +       I  IG+  C+  NN+EEC +DGGDCC+CT  G +  S  S+++ C DPNA C   +        +        DGYCD   N + C++DGGDCC           Y  +   C DP  GC        D+ V                +   C DGD  ++ DG C+  NNN  C YDGGDCC+C    D+   +        C+D +  CY
Sbjct:   61 SPEYLGCL-GYTNHIKDGYCDTDLNNAECGWDGGDCCACTC-GSDSDEELAHPCGQLGDGYDCLDPDVPDDCGVTPSPAAAIGYPDCEE-YLYEWQDGVCDDNLNTAECGYDGGDCCRCTCRDYNSWGYYTNCGYYGYDCMDPDAPSSCSTDSPTPSPAAGTDWPECEGYIYMIGDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSYSMDCQDPNANCTTPSPTPYCPWAS--------DGYCDSYYNTEDCDWDGGDCC----------AYGCSSTTCLDPIYGCDSITTYYGDNDVSTSTFSTYLTSSDADSVSSGCFDGDW-AVSDGKCDSGNNNAACDYDGGDCCECD-CYDYGEVYECGVVGYYCLDQTSLCY 419          
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 4.450e-38
Identity = 106/323 (32.82%), Postives = 141/323 (43.65%), Query Frame = 1
Query:  253 IGDGSCDWENNNEGCDYDGGDCCDCNS----GIDES-------SSMFCVDPDDVCYSL--AAVELQSKCIGRNIEYIGNSECNMENNSEECLYDGGDCCNCTNVG-----DNSSSSFSWTLFCVDPNATCYDH--AAVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIR---SDSYVYFLTDDL-----------------CRDPNSGCVDH-----------------------------------RVEMYPNCNDGDIP-SIGDGFCNLENNNKECFYDGGDCCDCTHIIDWYSSFNSSFSLCVDPSQAC 993
             GDG C  +NNN  C YDGGDCC+C      G D+            C+DPD  C       +E+   C+  +   +GN  C+ +NN+E C YD GDCC CT V      D   SS      C+DP A C D     + ++ NC  G +  +GDG+CD  NNN+ C YDGGDCC CT +    +D +                         C DPN+ CV+                                      +M  NC   + P  +GDG+CN +NNN+ C YDGGDCC CT   D+   +  +   C+DP  AC
Sbjct:   29 FGDGYCQLQNNNAECGYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSD---LGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC--GYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVAPPANDDWDXXXXXXXXXXXXXXXXGACGGGFACIDPNAACVNDDDITVGMDTPSNKCGWRXXXXXXXXXXXXXXXXXXXXDMIENC---EYPWGVGDGYCNQQNNNELCAYDGGDCCSCTCQNDFDDDWACTTFACIDPEAAC 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201329.5678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJK5_9PHAE4.550e-6541.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM92_9PHAE1.570e-6439.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT4_9PHAE5.870e-6038.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S4_ECTSI5.010e-5540.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI4.780e-4838.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI8.580e-4536.96Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI2.450e-4337.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6K0_9PHAE3.880e-4135.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX77_ECTSI1.360e-4033.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI4.450e-3832.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201329contigH-elongata_contig201329:103..1098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue8.6e-38
Seed eggNOG ortholog2880.D7FX77
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size996
Cds size996
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.9425287-CDS-H-elongata_contig201329:102..10981622930132.9425287-CDS-H-elongata_contig201329:102..1098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201329 103..1098 +
1691679293.3734612-CDS-H-elongata_contig201329:102..10981691679293.3734612-CDS-H-elongata_contig201329:102..1098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201329 103..1098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201329.5678.1prot_H-elongata_contig201329.5678.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201329 103..1098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201329.5678.1

>prot_H-elongata_contig201329.5678.1 ID=prot_H-elongata_contig201329.5678.1|Name=mRNA_H-elongata_contig201329.5678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
GAGTSALYDNCISGYIASIRNGWCDDENNNEECGYDGGDCCECTAVGTRS
DNYFTDVLCLDPNSGCVSTQVNSYPNCPGGYFPDIGDGSCDWENNNEGCD
YDGGDCCDCNSGIDESSSMFCVDPDDVCYSLAAVELQSKCIGRNIEYIGN
SECNMENNSEECLYDGGDCCNCTNVGDNSSSSFSWTLFCVDPNATCYDHA
AVALLSNCNNGTINNIGDGYCDQENNNKGCNYDGGDCCPCTNIRSDSYVY
FLTDDLCRDPNSGCVDHRVEMYPNCNDGDIPSIGDGFCNLENNNKECFYD
GGDCCDCTHIIDWYSSFNSSFSLCVDPSQACY
back to top

mRNA from alignment at H-elongata_contig201329:103..1098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201329.5678.1 ID=mRNA_H-elongata_contig201329.5678.1|Name=mRNA_H-elongata_contig201329.5678.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=996bp|location=Sequence derived from alignment at H-elongata_contig201329:103..1098+ (Himanthalia elongata Himel1 dioecious)
GGAGCTGGCACTAGTGCTTTGTACGATAACTGTATTAGCGGGTACATCGC TAGCATACGGAATGGTTGGTGCGATGATGAGAACAACAACGAGGAGTGTG GCTATGACGGGGGAGATTGCTGTGAATGCACCGCCGTGGGAACTCGGAGC GACAATTACTTCACGGATGTATTATGTCTTGATCCAAACTCGGGCTGTGT CAGCACGCAGGTCAATAGTTATCCCAACTGCCCCGGCGGGTATTTCCCAG ACATAGGGGATGGAAGCTGCGATTGGGAGAACAACAATGAGGGGTGTGAC TATGACGGGGGAGATTGCTGTGACTGCAACAGTGGCATCGATGAATCGTC TTCTATGTTCTGTGTGGACCCGGATGACGTTTGTTACAGTCTCGCCGCAG TCGAGCTACAATCGAAATGTATCGGCAGAAATATCGAATATATAGGAAAC AGCGAGTGTAATATGGAGAATAACAGCGAGGAATGTCTTTACGACGGGGG CGATTGCTGTAATTGCACCAACGTGGGCGATAATTCCTCTTCGTCCTTCT CCTGGACACTTTTTTGTGTGGACCCAAATGCCACTTGTTACGATCACGCC GCTGTCGCTTTACTATCAAACTGCAACAATGGAACAATCAACAACATCGG GGACGGTTATTGTGATCAGGAGAACAATAATAAGGGATGCAACTATGACG GAGGGGACTGCTGCCCCTGCACAAATATTCGGAGTGATTCTTATGTTTAT TTTCTTACAGACGATCTCTGTCGAGATCCAAATTCGGGCTGCGTCGACCA CCGTGTCGAAATGTACCCGAACTGTAACGACGGGGATATCCCAAGCATAG GGGACGGATTCTGCAACCTAGAGAACAACAATAAGGAATGTTTCTATGAC GGGGGAGATTGCTGTGATTGCACACACATCATCGATTGGTATTCGTCCTT CAACTCCTCATTCTCGCTCTGTGTGGACCCCAGCCAAGCTTGCTAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig201329:103..1098+

>mRNA_H-elongata_contig201329.5678.1 ID=mRNA_H-elongata_contig201329.5678.1|Name=mRNA_H-elongata_contig201329.5678.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig201329:103..1098+ (Himanthalia elongata Himel1 dioecious)
GGAGCTGGCACTAGTGCTTTGTACGATAACTGTATTAGCGGGTACATCGC
TAGCATACGGAATGGTTGGTGCGATGATGAGAACAACAACGAGGAGTGTG
GCTATGACGGGGGAGATTGCTGTGAATGCACCGCCGTGGGAACTCGGAGC
GACAATTACTTCACGGATGTATTATGTCTTGATCCAAACTCGGGCTGTGT
CAGCACGCAGGTCAATAGTTATCCCAACTGCCCCGGCGGGTATTTCCCAG
ACATAGGGGATGGAAGCTGCGATTGGGAGAACAACAATGAGGGGTGTGAC
TATGACGGGGGAGATTGCTGTGACTGCAACAGTGGCATCGATGAATCGTC
TTCTATGTTCTGTGTGGACCCGGATGACGTTTGTTACAGTCTCGCCGCAG
TCGAGCTACAATCGAAATGTATCGGCAGAAATATCGAATATATAGGAAAC
AGCGAGTGTAATATGGAGAATAACAGCGAGGAATGTCTTTACGACGGGGG
CGATTGCTGTAATTGCACCAACGTGGGCGATAATTCCTCTTCGTCCTTCT
CCTGGACACTTTTTTGTGTGGACCCAAATGCCACTTGTTACGATCACGCC
GCTGTCGCTTTACTATCAAACTGCAACAATGGAACAATCAACAACATCGG
GGACGGTTATTGTGATCAGGAGAACAATAATAAGGGATGCAACTATGACG
GAGGGGACTGCTGCCCCTGCACAAATATTCGGAGTGATTCTTATGTTTAT
TTTCTTACAGACGATCTCTGTCGAGATCCAAATTCGGGCTGCGTCGACCA
CCGTGTCGAAATGTACCCGAACTGTAACGACGGGGATATCCCAAGCATAG
GGGACGGATTCTGCAACCTAGAGAACAACAATAAGGAATGTTTCTATGAC
GGGGGAGATTGCTGTGATTGCACACACATCATCGATTGGTATTCGTCCTT
CAACTCCTCATTCTCGCTCTGTGTGGACCCCAGCCAAGCTTGCTATGGAG
CTGGCACTAGTGCTTTGTACGATAACTGTATTAGCGGGTACATCGCTAGC
ATACGGAATGGTTGGTGCGATGATGAGAACAACAACGAGGAGTGTGGCTA
TGACGGGGGAGATTGCTGTGAATGCACCGCCGTGGGAACTCGGAGCGACA
ATTACTTCACGGATGTATTATGTCTTGATCCAAACTCGGGCTGTGTCAGC
ACGCAGGTCAATAGTTATCCCAACTGCCCCGGCGGGTATTTCCCAGACAT
AGGGGATGGAAGCTGCGATTGGGAGAACAACAATGAGGGGTGTGACTATG
ACGGGGGAGATTGCTGTGACTGCAACAGTGGCATCGATGAATCGTCTTCT
ATGTTCTGTGTGGACCCGGATGACGTTTGTTACAGTCTCGCCGCAGTCGA
GCTACAATCGAAATGTATCGGCAGAAATATCGAATATATAGGAAACAGCG
AGTGTAATATGGAGAATAACAGCGAGGAATGTCTTTACGACGGGGGCGAT
TGCTGTAATTGCACCAACGTGGGCGATAATTCCTCTTCGTCCTTCTCCTG
GACACTTTTTTGTGTGGACCCAAATGCCACTTGTTACGATCACGCCGCTG
TCGCTTTACTATCAAACTGCAACAATGGAACAATCAACAACATCGGGGAC
GGTTATTGTGATCAGGAGAACAATAATAAGGGATGCAACTATGACGGAGG
GGACTGCTGCCCCTGCACAAATATTCGGAGTGATTCTTATGTTTATTTTC
TTACAGACGATCTCTGTCGAGATCCAAATTCGGGCTGCGTCGACCACCGT
GTCGAAATGTACCCGAACTGTAACGACGGGGATATCCCAAGCATAGGGGA
CGGATTCTGCAACCTAGAGAACAACAATAAGGAATGTTTCTATGACGGGG
GAGATTGCTGTGATTGCACACACATCATCGATTGGTATTCGTCCTTCAAC
TCCTCATTCTCGCTCTGTGTGGACCCCAGCCAAGCTTGCTAT
back to top