mRNA_H-elongata_contig201318.5676.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201318.5676.1
Unique NamemRNA_H-elongata_contig201318.5676.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: D8LEB7_ECTSI (IRK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 2.770e-65
Identity = 107/152 (70.39%), Postives = 129/152 (84.87%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTISHFLGCHLDLPSLREAFLFSLETMSTVGYGTSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GRWNIRRLK   + +KL+  DPFHS +N ST KIIL ++ALY+++V +F++VY TIS  LGC+L L S+RE FLFSLETM+TVGYGT DYLF +C IMLP+L+LQAC+GLLIDAFLIGILF RLSRPQTRA+TVVF+  AVIRRVRGE+YFM
Sbjct:  129 GRWNIRRLKTQADVQKLIGLDPFHSFLNQSTLKIILLIIALYLSLVLLFAIVYTTISLTLGCNLQLTSIREGFLFSLETMTTVGYGTHDYLFGSCWIMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFM 280          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: A0A6H5K8M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M2_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 4.570e-63
Identity = 107/152 (70.39%), Postives = 130/152 (85.53%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTISHFLGCHLDLPSLREAFLFSLETMSTVGYGTSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GRWNIRRLK   + +KL+  DPFHS +N ST KIIL ++ LY+++VF+F++VY TISH LGC+L L S+RE FLFSLETM+TVGYGT DYLF +C +MLP+L+LQAC+GLLIDAFLIGILF RLSRPQTRA+TVVF+  AVIRRVRGE+YFM
Sbjct:   92 GRWNIRRLKTQADVQKLIGLDPFHSFLNQSTLKIILRIIGLYLSLVFLFAIVYTTISHTLGCNLQLTSIREGFLFSLETMTTVGYGTHDYLFGSCWVMLPMLSLQACIGLLIDAFLIGILFARLSRPQTRANTVVFTKNAVIRRVRGEAYFM 243          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: A0A836CL18_9STRA (Inward rectifier potassium channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL18_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.150e-46
Identity = 79/152 (51.97%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTISHFLGCHLDLPSLREAFLFSLETMSTVGYGTSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GRWNI R       + L  +D FH++++++T+K++  +   Y+ +V  F+++Y  ISHF GC++ +   REA+ FSLETM+TVGYGT D  F  C  ++ ++  QAC GLLIDA LIG+LF RL+RPQTRASTVVFSN+AV+RR+RGE YFM
Sbjct:   16 GRWNIDRNTKDDHIRTLFNNDRFHTVLHMTTWKVLSYLFFAYLVVVSTFALIYLIISHFDGCNMGIVDYREAYYFSLETMTTVGYGTQDVFFGRCWSVMVIITAQACCGLLIDALLIGVLFARLARPQTRASTVVFSNKAVLRRIRGEYYFM 167          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: A0A835YU47_9STRA (Inward rectifier potassium channel-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU47_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.800e-45
Identity = 78/152 (51.32%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTISHFLGCHLDLPSLREAFLFSLETMSTVGYGTSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GRWNI R       +KL  +D FH++++++T+K++  +   Y+A+V +F+ +Y  I+ F GC+L +   REA+ FSLETM+TVG+GT D  F  C  ++ ++  QAC GLLIDA LIG+LF RL RPQTRASTVVFS++AV+RR+RGE YFM
Sbjct:   41 GRWNIGRNTKDEGMRKLFSNDWFHTVLHMTTWKVLGALFLTYLAVVTVFAALYLAIARFDGCNLGIVDYREAYYFSLETMTTVGFGTQDVFFGRCWSVMVIITAQACSGLLIDALLIGLLFARLGRPQTRASTVVFSDKAVLRRIRGEYYFM 192          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: A0A482S2N8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2N8_9ARCH)

HSP 1 Score: 122 bits (306), Expect = 2.150e-31
Identity = 66/152 (43.42%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTISHFLGCHLDLPSLREAFLFSLETMSTVGYGTSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GR  +++     +   L  +D FHS+V+  T +I+  +  +Y+A V  F+ +Y+ I     C LD  +   AF FSLETM+T+GY T D  F NC I+  VL LQ C+ L++D   IGI++ RL+RP +RAST++FS  AVIRR+RG+ YFM
Sbjct:   50 GRIYVKKRIQKADWWALYGNDWFHSLVDAPTLRIVALLFTVYVATVAFFATLYYAIRLNYVCELDFETWLGAFDFSLETMATIGYTTKDLSFANCAIVTVVLTLQCCIRLIVDGSTIGIIYCRLARPHSRASTIIFSKNAVIRRIRGKLYFM 201          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: F0WGM8_9STRA (Animal inward rectifier K channel (IRKC) family protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0WGM8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.920e-30
Identity = 63/155 (40.65%), Postives = 101/155 (65.16%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTISHF-LGCHLDLPSLREAFLFSLETMSTVGYG--TSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GR+NI+R+    + +K    DPFH++VN ST +I++G+ ALY  I+ +F+  Y  +S     CH+ L ++ EA++FSLET+ T+GYG  T+D  +  C  M  +L+L+A  G+ +D+  IG+ F R +R   RA+T++F+N  +IR +RG  YFM
Sbjct:   37 GRFNIKRIGG--DWRKRYYDDPFHTVVNTSTSRIVIGIFALYTLIILLFAFAYLFVSRVESNCHVGLNTVMEAYIFSLETIMTIGYGAPTNDIFYGGCKTMAILLSLEAYAGIFLDSICIGMFFTRFARANKRANTIMFTNYGIIREIRGHYYFM 189          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: A0A7S2UYT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYT9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.960e-29
Identity = 60/152 (39.47%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTIS-HFLGCHLDLPSLREAFLFSLETMSTVGYGTSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYF 453
            G+WN+ R  DLP   ++  +D FH++VN  T K++  +L  Y+ I   F  VYW IS      +LD+ +L E ++FSLET++T+GYGT D  F   + ++ V  +Q  +GL++D    G++F R+SR  TRA +++FS++AV+ RV G+  F
Sbjct:   59 GKWNLVRTGDLPIRARVYGADWFHTLVNSGTKKLLGCLLLAYVVIALFFGGVYWAISVSDPSTNLDIQNLVEGYMFSLETLTTIGYGTHDIFFGGNMYVVVVFTVQVLVGLVLDCVTFGVIFSRISRANTRAFSIIFSDKAVVTRVNGKLTF 210          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: A0A833SV26_PHYIN (Inward rectifier potassium channel transmembrane domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SV26_PHYIN)

HSP 1 Score: 116 bits (290), Expect = 1.450e-28
Identity = 62/155 (40.00%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTIS-HFLGCHLDLPSLREAFLFSLETMSTVGYG--TSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GR+N+ R     + +K+   DPFH+++N  T +II G+   Y  I+  F+V Y  +S     CH+ L S+ +A++FSLET+ T+GYG  T D  +  C  +  +L L++  G+++D+  IGI + R SR   RA+T++FSN AVIR++RG  YFM
Sbjct:   42 GRFNVYRKGG--DWRKIYWDDPFHTVINTRTSRIIWGVFIAYFFIILFFAVAYLDVSVRHPTCHVGLSSIMDAYIFSLETIMTIGYGAPTDDIFYGGCTSIATLLTLESFSGIILDSVCIGIFYARFSRANQRANTIMFSNSAVIRKIRGHFYFM 194          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: H3GJH8_PHYRM (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=H3GJH8_PHYRM)

HSP 1 Score: 117 bits (293), Expect = 1.890e-28
Identity = 63/155 (40.65%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFSVVYWTIS-HFLGCHLDLPSLREAFLFSLETMSTVGYG--TSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GR+NI R     + +K+   DPFH+++N  T +II G+   Y  I+F F++ Y  +S     CH+ L S+ +A++FSLET+ T+GYG  T D  +  C  +  +L L++  G+++D+  IGI + R SR   RA+T++FSN AVIR++RG  YFM
Sbjct:   42 GRFNIYRKGG--DWRKIYWDDPFHTVINTRTSRIIWGVFIAYFFIIFFFALAYLDVSVRHPTCHVGLSSIMDAYVFSLETIMTIGYGAPTDDIFYGGCTSIATLLTLESFAGIILDSVCIGIFYARFSRANQRANTIMFSNSAVIRKIRGHYYFM 194          
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Match: A9UNU4_MONBE (Uncharacterized protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UNU4_MONBE)

HSP 1 Score: 117 bits (293), Expect = 4.850e-28
Identity = 66/153 (43.14%), Postives = 105/153 (68.63%), Query Frame = 1
Query:    1 GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFS-VVYWTISHFLGCHLDLPSLREAFLFSLETMSTVGYGTSDYLFDNCLIMLPVLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESYFM 456
            GR+ +RR   L    +L +SD FH +VNL+T+KI++ M+ LY+ +  +++ + +W+ S    C L+L + R+AF+ SLE+++T+GYG  D  F++CL    V+  QA +GL +D+ LIG+LF R SR  TR+ +V+FSN+AVIR VR + +FM
Sbjct:  128 GRFAVRRSMPL-HAFRLYRSDWFHFLVNLATWKIVVIMMFLYVVVCVVYAGLFHWSSS---ACGLELKTFRQAFMLSLESLTTIGYGVPDPYFNDCLAGPFVVLSQAIVGLFVDSVLIGVLFTRFSRGTTRSRSVIFSNKAVIRAVRDQWHFM 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201318.5676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEB7_ECTSI2.770e-6570.39IRK domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8M2_9PHAE4.570e-6370.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CL18_9STRA1.150e-4651.97Inward rectifier potassium channel-domain-containi... [more]
A0A835YU47_9STRA3.800e-4551.32Inward rectifier potassium channel-domain-containi... [more]
A0A482S2N8_9ARCH2.150e-3143.42Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F0WGM8_9STRA5.920e-3040.65Animal inward rectifier K channel (IRKC) family pr... [more]
A0A7S2UYT9_9STRA6.960e-2939.47Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A833SV26_PHYIN1.450e-2840.00Inward rectifier potassium channel transmembrane d... [more]
H3GJH8_PHYRM1.890e-2840.65Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
A9UNU4_MONBE4.850e-2843.14Uncharacterized protein n=1 Tax=Monosiga brevicoll... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201318contigH-elongata_contig201318:114..927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3.7e-52
Seed eggNOG ortholog2880.D8LEB7
KEGG koko:K05005,ko:K05330
KEGG TC1.A.2.1.14,1.A.2.1.15,1.A.2.1.9
KEGG Pathwayko04725,ko04921,map04725,map04921
EggNOG free text desc.inward rectifier potassium channel activity
EggNOG OGsKOG3827@1,KOG3827@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categorysignal anchor
Exons2
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.805401-CDS-H-elongata_contig201318:113..4491622930132.805401-CDS-H-elongata_contig201318:113..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201318 114..449 -
1691679293.3206077-CDS-H-elongata_contig201318:113..4491691679293.3206077-CDS-H-elongata_contig201318:113..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201318 114..449 -
1622930132.838013-CDS-H-elongata_contig201318:804..9271622930132.838013-CDS-H-elongata_contig201318:804..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201318 805..927 -
1691679293.3407485-CDS-H-elongata_contig201318:804..9271691679293.3407485-CDS-H-elongata_contig201318:804..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201318 805..927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201318.5676.1prot_H-elongata_contig201318.5676.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201318 114..927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201318.5676.1

>prot_H-elongata_contig201318.5676.1 ID=prot_H-elongata_contig201318.5676.1|Name=mRNA_H-elongata_contig201318.5676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
GRWNIRRLKDLPETKKLVQSDPFHSMVNLSTFKIILGMLALYIAIVFIFS
VVYWTISHFLGCHLDLPSLREAFLFSLETMSTVGYGTSDYLFDNCLIMLP
VLALQACMGLLIDAFLIGILFVRLSRPQTRASTVVFSNEAVIRRVRGESY
FM*
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mRNA from alignment at H-elongata_contig201318:114..927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201318.5676.1 ID=mRNA_H-elongata_contig201318.5676.1|Name=mRNA_H-elongata_contig201318.5676.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=814bp|location=Sequence derived from alignment at H-elongata_contig201318:114..927- (Himanthalia elongata Himel1 dioecious)
GGGAGGTGGAACATTCGTCGCCTCAAGGACCTACCTGAAACGAAAAAACT CGTGCAGTCCGACCCTTTTCACTCCATGGTGAACCTTTCGACCTTCAAGA TCATCCTCGGAATGCTGGCTTTGGTGAGAACCTCGAGGAATGCCACATCA TGTTGAAGTTTATAAAAGCACATATTCGGCAAGCGGTGTGTGTTTCTGCG TACCACCTTTCGCCATACCGAGAAAGCGATGCTGTCATGATCTGAGCGGC CGCCACTTCGAACCCCTCGATCCCTGTTAGATTATGTTTTGTACGTCGTT TGTCACGAGATGGCTTACCGTCCTGGCCTCACCACCATGCCTATTTTTTG TACCCAAGACAAAACAGCGCGATCCTGGTACCCCCCCCACCCCCCGTCAG CCTTCCCCCCTCCCCGCCCCGACCTCAGTTGGCCCTTGACCCCTACGCGC TGCACCCGTCTGATGTTCTCCCTCCCAGTACATCGCGATCGTGTTCATCT TCTCGGTGGTGTACTGGACGATCTCGCACTTTTTGGGGTGCCACTTGGAC TTGCCGTCCCTCCGCGAGGCCTTCCTCTTCTCCCTGGAGACCATGTCGAC CGTCGGTTACGGCACCAGCGACTACTTGTTCGACAACTGCCTGATCATGC TGCCGGTGCTGGCCTTGCAGGCGTGCATGGGGTTGCTGATCGACGCCTTC CTCATTGGGATTCTCTTCGTCAGGCTCAGTCGGCCTCAGACGCGCGCGAG CACGGTGGTCTTCTCCAATGAAGCTGTCATTCGCCGAGTGCGAGGGGAGT CGTACTTCATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig201318:114..927-

>mRNA_H-elongata_contig201318.5676.1 ID=mRNA_H-elongata_contig201318.5676.1|Name=mRNA_H-elongata_contig201318.5676.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig201318:114..927- (Himanthalia elongata Himel1 dioecious)
GGGAGGTGGAACATTCGTCGCCTCAAGGACCTACCTGAAACGAAAAAACT
CGTGCAGTCCGACCCTTTTCACTCCATGGTGAACCTTTCGACCTTCAAGA
TCATCCTCGGAATGCTGGCTTTGGGGAGGTGGAACATTCGTCGCCTCAAG
GACCTACCTGAAACGAAAAAACTCGTGCAGTCCGACCCTTTTCACTCCAT
GGTGAACCTTTCGACCTTCAAGATCATCCTCGGAATGCTGGCTTTGTACA
TCGCGATCGTGTTCATCTTCTCGGTGGTGTACTGGACGATCTCGCACTTT
TTGGGGTGCCACTTGGACTTGCCGTCCCTCCGCGAGGCCTTCCTCTTCTC
CCTGGAGACCATGTCGACCGTCGGTTACGGCACCAGCGACTACTTGTTCG
ACAACTGCCTGATCATGCTGCCGGTGCTGGCCTTGCAGGCGTGCATGGGG
TTGCTGATCGACGCCTTCCTCATTGGGATTCTCTTCGTCAGGCTCAGTCG
GCCTCAGACGCGCGCGAGCACGGTGGTCTTCTCCAATGAAGCTGTCATTC
GCCGAGTGCGAGGGGAGTCGTACTTCATGTGATACATCGCGATCGTGTTC
ATCTTCTCGGTGGTGTACTGGACGATCTCGCACTTTTTGGGGTGCCACTT
GGACTTGCCGTCCCTCCGCGAGGCCTTCCTCTTCTCCCTGGAGACCATGT
CGACCGTCGGTTACGGCACCAGCGACTACTTGTTCGACAACTGCCTGATC
ATGCTGCCGGTGCTGGCCTTGCAGGCGTGCATGGGGTTGCTGATCGACGC
CTTCCTCATTGGGATTCTCTTCGTCAGGCTCAGTCGGCCTCAGACGCGCG
CGAGCACGGTGGTCTTCTCCAATGAAGCTGTCATTCGCCGAGTGCGAGGG
GAGTCGTACTTCATGTGA
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