mRNA_H-elongata_contig201211.5670.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: D8LKJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ8_ECTSI) HSP 1 Score: 130 bits (327), Expect = 1.830e-35 Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1
Query: 1 SIGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEE 186
SIGGREVPTYIVSRH SNWGFLLESCWT+YTSWEMPPR+GP+CD+SLLDDKL VTMDDQWEE
Sbjct: 253 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 314
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A6H5LH86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH86_9PHAE) HSP 1 Score: 130 bits (327), Expect = 6.670e-35 Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1
Query: 1 SIGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEE 186
SIGGREVPTYIVSRH SNWGFLLESCWT+YTSWEMPPR+GP+CD+SLLDDKL VTMDDQWEE
Sbjct: 193 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 254
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S4DSF9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSF9_9EUKA) HSP 1 Score: 68.6 bits (166), Expect = 5.440e-12 Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 22 PTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEV 189
P+Y++SRHS NWGFL++SCW L+TS+ MP P D+ L D L+V +DDQ EEV
Sbjct: 184 PSYVISRHSRNWGFLMQSCWVLWTSFPMP---APGIDKFLDDGHLEVRVDDQIEEV 236
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S0DF25_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DF25_9EUKA) HSP 1 Score: 68.2 bits (165), Expect = 6.140e-12 Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 22 PTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEV 189
P+YI SRH NWGF+++SCW L+TS+ MP P D L+D KL+V +DDQ EEV
Sbjct: 182 PSYITSRHPRNWGFIMQSCWVLWTSFPMP---APGHDDLLVDQKLEVKVDDQMEEV 234
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A812PGR1_9DINO (Kif11-b protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PGR1_9DINO) HSP 1 Score: 68.6 bits (166), Expect = 6.350e-12 Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 10 GREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEVSVDN 201
GREVPTY V R+ NWG+ +ESCW +++SW MP +D PE + L D++L V+ D Q ++ N
Sbjct: 186 GREVPTYCVRRNKHNWGWTMESCWVVWSSWPMPRKDSPEAEL-LEDERLPVSFDVQEDQAMAFN 248
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A1Q9F4B6_SYMMI (Kinesin-like protein KIF11-B n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F4B6_SYMMI) HSP 1 Score: 68.6 bits (166), Expect = 6.480e-12 Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 10 GREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEVSVDN 201
GREVPTY V R+ NWG+ +ESCW +++SW MP +D PE + L D++L V+ D Q ++ N
Sbjct: 1217 GREVPTYCVRRNKHNWGWTMESCWVVWSSWPMPRKDSPEAEL-LEDERLPVSFDVQEDQAMAFN 1279
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A0M0J8D1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8D1_9EUKA) HSP 1 Score: 68.2 bits (165), Expect = 6.800e-12 Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 4 IGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEVSVDN 201
+ GR+VPTY VSRHS NWGFL++SCW LYTS+ MP R D SL D+ L++T++ Q E N
Sbjct: 193 VDGRKVPTYHVSRHS-NWGFLMQSCWVLYTSFPMPVRG---TDPSLDDEALEITIERQSREARAYN 254
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S0T873_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T873_9RHOD) HSP 1 Score: 66.6 bits (161), Expect = 1.690e-11 Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 16 EVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEVSVDN 201
+ P Y+VSRH NWGF+++SCW + TS+EMPPR G E L D+ L VT++ Q E N
Sbjct: 91 QFPAYVVSRHERNWGFIMQSCWVVLTSFEMPPRGGDEL---LEDEALSVTVEYQASEAMAYN 149
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S0E3L2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E3L2_9CRYP) HSP 1 Score: 63.2 bits (152), Expect = 4.690e-10 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 1 SIGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEV 189
S+ GR+VPTY+VSRH + GFL++SCW + +S+ +PP P D + D+ L VT++ Q EV
Sbjct: 225 SVEGRDVPTYVVSRHPKHRGFLMQSCWAVMSSFPLPP---PREDPDMEDEALSVTLECQQTEV 284
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S3JQG3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQG3_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 8.430e-10 Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 4 IGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEE 186
+ G++VPTYI+SRH + GF+++SCW LYT++ MPP+ D L DD L+V DQ E
Sbjct: 202 VDGQDVPTYIISRHPKHKGFIMQSCWVLYTAFPMPPKG---TDPYLEDDALQVGWVDQARE 259 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig201211.5670.1 >prot_H-elongata_contig201211.5670.1 ID=prot_H-elongata_contig201211.5670.1|Name=mRNA_H-elongata_contig201211.5670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp SIGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDback to top mRNA from alignment at H-elongata_contig201211:113..313+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig201211.5670.1 ID=mRNA_H-elongata_contig201211.5670.1|Name=mRNA_H-elongata_contig201211.5670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig201211:113..313+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig201211:113..313+ >mRNA_H-elongata_contig201211.5670.1 ID=mRNA_H-elongata_contig201211.5670.1|Name=mRNA_H-elongata_contig201211.5670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig201211:113..313+ (Himanthalia elongata Himel1 dioecious)back to top |