mRNA_H-elongata_contig201211.5670.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201211.5670.1
Unique NamemRNA_H-elongata_contig201211.5670.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: D8LKJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ8_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.830e-35
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1
Query:    1 SIGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEE 186
            SIGGREVPTYIVSRH SNWGFLLESCWT+YTSWEMPPR+GP+CD+SLLDDKL VTMDDQWEE
Sbjct:  253 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 314          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A6H5LH86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH86_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 6.670e-35
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1
Query:    1 SIGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEE 186
            SIGGREVPTYIVSRH SNWGFLLESCWT+YTSWEMPPR+GP+CD+SLLDDKL VTMDDQWEE
Sbjct:  193 SIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 254          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S4DSF9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSF9_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 5.440e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   22 PTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEV 189
            P+Y++SRHS NWGFL++SCW L+TS+ MP    P  D+ L D  L+V +DDQ EEV
Sbjct:  184 PSYVISRHSRNWGFLMQSCWVLWTSFPMP---APGIDKFLDDGHLEVRVDDQIEEV 236          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S0DF25_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DF25_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 6.140e-12
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   22 PTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEV 189
            P+YI SRH  NWGF+++SCW L+TS+ MP    P  D  L+D KL+V +DDQ EEV
Sbjct:  182 PSYITSRHPRNWGFIMQSCWVLWTSFPMP---APGHDDLLVDQKLEVKVDDQMEEV 234          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A812PGR1_9DINO (Kif11-b protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PGR1_9DINO)

HSP 1 Score: 68.6 bits (166), Expect = 6.350e-12
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   10 GREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEVSVDN 201
            GREVPTY V R+  NWG+ +ESCW +++SW MP +D PE +  L D++L V+ D Q ++    N
Sbjct:  186 GREVPTYCVRRNKHNWGWTMESCWVVWSSWPMPRKDSPEAEL-LEDERLPVSFDVQEDQAMAFN 248          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A1Q9F4B6_SYMMI (Kinesin-like protein KIF11-B n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F4B6_SYMMI)

HSP 1 Score: 68.6 bits (166), Expect = 6.480e-12
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   10 GREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEVSVDN 201
            GREVPTY V R+  NWG+ +ESCW +++SW MP +D PE +  L D++L V+ D Q ++    N
Sbjct: 1217 GREVPTYCVRRNKHNWGWTMESCWVVWSSWPMPRKDSPEAEL-LEDERLPVSFDVQEDQAMAFN 1279          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A0M0J8D1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8D1_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 6.800e-12
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    4 IGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEVSVDN 201
            + GR+VPTY VSRHS NWGFL++SCW LYTS+ MP R     D SL D+ L++T++ Q  E    N
Sbjct:  193 VDGRKVPTYHVSRHS-NWGFLMQSCWVLYTSFPMPVRG---TDPSLDDEALEITIERQSREARAYN 254          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S0T873_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T873_9RHOD)

HSP 1 Score: 66.6 bits (161), Expect = 1.690e-11
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   16 EVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEVSVDN 201
            + P Y+VSRH  NWGF+++SCW + TS+EMPPR G E    L D+ L VT++ Q  E    N
Sbjct:   91 QFPAYVVSRHERNWGFIMQSCWVVLTSFEMPPRGGDEL---LEDEALSVTVEYQASEAMAYN 149          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S0E3L2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E3L2_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 4.690e-10
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 SIGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEEV 189
            S+ GR+VPTY+VSRH  + GFL++SCW + +S+ +PP   P  D  + D+ L VT++ Q  EV
Sbjct:  225 SVEGRDVPTYVVSRHPKHRGFLMQSCWAVMSSFPLPP---PREDPDMEDEALSVTLECQQTEV 284          
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Match: A0A7S3JQG3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQG3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.430e-10
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    4 IGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDDKLKVTMDDQWEE 186
            + G++VPTYI+SRH  + GF+++SCW LYT++ MPP+     D  L DD L+V   DQ  E
Sbjct:  202 VDGQDVPTYIISRHPKHKGFIMQSCWVLYTAFPMPPKG---TDPYLEDDALQVGWVDQARE 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201211.5670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKJ8_ECTSI1.830e-3590.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LH86_9PHAE6.670e-3590.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DSF9_9EUKA5.440e-1255.36Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0DF25_9EUKA6.140e-1255.36Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A812PGR1_9DINO6.350e-1246.88Kif11-b protein n=1 Tax=Symbiodinium sp. CCMP2592 ... [more]
A0A1Q9F4B6_SYMMI6.480e-1246.88Kinesin-like protein KIF11-B n=1 Tax=Symbiodinium ... [more]
A0A0M0J8D1_9EUKA6.800e-1253.03Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S0T873_9RHOD1.690e-1148.39Hypothetical protein n=2 Tax=Erythrolobus madagasc... [more]
A0A7S0E3L2_9CRYP4.690e-1046.03Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3JQG3_9STRA8.430e-1047.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201211contigH-elongata_contig201211:113..313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.2106419-CDS-H-elongata_contig201211:112..3131622930132.2106419-CDS-H-elongata_contig201211:112..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201211 113..313 +
1691679293.1525073-CDS-H-elongata_contig201211:112..3131691679293.1525073-CDS-H-elongata_contig201211:112..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201211 113..313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201211.5670.1prot_H-elongata_contig201211.5670.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201211 113..313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201211.5670.1

>prot_H-elongata_contig201211.5670.1 ID=prot_H-elongata_contig201211.5670.1|Name=mRNA_H-elongata_contig201211.5670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
SIGGREVPTYIVSRHSSNWGFLLESCWTLYTSWEMPPRDGPECDRSLLDD
KLKVTMDDQWEEVSVDN
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mRNA from alignment at H-elongata_contig201211:113..313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201211.5670.1 ID=mRNA_H-elongata_contig201211.5670.1|Name=mRNA_H-elongata_contig201211.5670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig201211:113..313+ (Himanthalia elongata Himel1 dioecious)
AGCATCGGAGGACGCGAGGTGCCGACGTACATCGTGTCGAGGCACTCATC GAACTGGGGCTTCCTCCTGGAGAGCTGCTGGACCCTCTATACGAGCTGGG AAATGCCTCCTCGTGACGGACCAGAGTGCGACCGGTCGCTCTTGGATGAC AAGCTAAAGGTCACTATGGACGATCAGTGGGAAGAGGTTAGTGTAGATAA T
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Coding sequence (CDS) from alignment at H-elongata_contig201211:113..313+

>mRNA_H-elongata_contig201211.5670.1 ID=mRNA_H-elongata_contig201211.5670.1|Name=mRNA_H-elongata_contig201211.5670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig201211:113..313+ (Himanthalia elongata Himel1 dioecious)
AGCATCGGAGGACGCGAGGTGCCGACGTACATCGTGTCGAGGCACTCATC
GAACTGGGGCTTCCTCCTGGAGAGCTGCTGGACCCTCTATACGAGCTGGG
AAATGCCTCCTCGTGACGGACCAGAGTGCGACCGGTCGCTCTTGGATGAC
AAGCTAAAGGTCACTATGGACGATCAGTGGGAAGAGGTTAGTGTAGATAA
TAGCATCGGAGGACGCGAGGTGCCGACGTACATCGTGTCGAGGCACTCAT
CGAACTGGGGCTTCCTCCTGGAGAGCTGCTGGACCCTCTATACGAGCTGG
GAAATGCCTCCTCGTGACGGACCAGAGTGCGACCGGTCGCTCTTGGATGA
CAAGCTAAAGGTCACTATGGACGATCAGTGGGAAGAGGTTAGTGTAGATA
AT
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