mRNA_H-elongata_contig200742.5653.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: UPI001B7DD8DC (RNA polymerase II-associated protein 3 isoform X1 n=2 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DD8DC) HSP 1 Score: 58.2 bits (139), Expect = 1.050e-7 Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 13 NLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKMLRRLAEE 240
N A ACIK + EAEA CS+A+ + +KA+ RRG AR+ LG++ EA DF V ++EP N +A L ++ +E
Sbjct: 318 NRAMACIKLEKFAEAEADCSQAISLDNTYSKAFARRGTARMCLGKMKEAKEDFEMVLLLEPGNKQALTELEKINKE 393
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: A0A8H5B3H2_9AGAR (RPAP3_C domain-containing protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5B3H2_9AGAR) HSP 1 Score: 56.2 bits (134), Expect = 4.790e-7 Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 13 NLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKMLRRLAE 237
N A A +K G+ ++AE C+ L P + KA FRRGQAR+A+ +L+EA DF ++ + EP+N L+++ +
Sbjct: 45 NRAAAYLKLGKAEDAERDCNIVLRLNPKNVKALFRRGQARVAMNKLLEAHKDFSDILVAEPSNAAVQDELKKVVD 119
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: A0A834KPG9_VESGE (Peptidylprolyl isomerase n=9 Tax=Vespinae TaxID=7439 RepID=A0A834KPG9_VESGE) HSP 1 Score: 55.5 bits (132), Expect = 9.120e-7 Identity = 35/72 (48.61%), Postives = 42/72 (58.33%), Query Frame = 1
Query: 7 YCNLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKML 222
+ NLA +K + EA+ ACS AL P + KAYFRRGQA LAL A DF EV IEP N A+K +
Sbjct: 342 HLNLALCYLKTDQNVEAKDACSEALKLDPRNEKAYFRRGQAYLALASPEIAIKDFEEVLKIEPKNVAASKQI 413
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: E2LL38_MONPE (Uncharacterized protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LL38_MONPE) HSP 1 Score: 55.1 bits (131), Expect = 1.050e-6 Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 13 NLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKMLRRL 231
N A A +K G+ ++AE C+ L PS+ KA FRRGQARL +G+L EA DF A IEP N L ++
Sbjct: 49 NRAAAYLKIGKNEDAERDCTTVLTLSPSNVKAIFRRGQARLGMGKLDEAKADFEAAAKIEPGNQAVKDELEKI 121
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: A0A4Z2FR30_9TELE (RNA polymerase II-associated protein 3 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2FR30_9TELE) HSP 1 Score: 53.5 bits (127), Expect = 2.170e-6 Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 37 GGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKMLRRL 231
G +EAE CSRA+ S AKA+ RR AR+ALG+L EA DF+EV +EP N +A L++L
Sbjct: 11 GCRNEEAEEDCSRAVALDGSYAKAFARRATARVALGKLEEAKQDFQEVLKLEPGNKQALNQLQKL 75
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: A0A0W0FC10_9AGAR (RPAP3_C domain-containing protein n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=A0A0W0FC10_9AGAR) HSP 1 Score: 53.9 bits (128), Expect = 3.020e-6 Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 13 NLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTN 201
N A A +K G+ ++AE C+ L PS+ KA FRRGQARL +G+L EA DF A IEP N
Sbjct: 46 NRAAAYLKLGKNEDAERDCTTVLTLSPSNVKAIFRRGQARLGMGKLDEAKADFEAAAKIEPGN 108
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: A0A6P7VD93_IXOSC (RNA polymerase II-associated protein 3 n=3 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7VD93_IXOSC) HSP 1 Score: 53.9 bits (128), Expect = 3.100e-6 Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 7 YCNLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKMLRRL 231
Y N A A ++ + AE CSRAL KAY RRG AR LG+ AA DFR+V ++P+N EAA+ LR L
Sbjct: 144 YANRAMAFLRKNMLGAAEEDCSRALAWDDGYVKAYHRRGLARDGLGKHQLAAEDFRKVLQLDPSNKEAAERLRVL 218
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: UPI002008E905 (RNA polymerase II-associated protein 3 n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=UPI002008E905) HSP 1 Score: 53.9 bits (128), Expect = 3.130e-6 Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 13 NLAFACIKGGEMKEAEAACSRAL--HKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKMLRRLA 234
N A A +K G+ ++ E C+ L ++ KA FRRGQAR+ +G L+EA DF +V + EP+N AA+ L+ LA
Sbjct: 45 NRAAAYLKLGKFEDTERDCNTVLTLSAPKTNVKALFRRGQARVGMGNLLEAQKDFSDVLLQEPSNASAAEELKNLA 120
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: B7PI94_IXOSC (Heat shock protein 70 (HSP70)-interacting protein, putative n=5 Tax=Ixodes TaxID=6944 RepID=B7PI94_IXOSC) HSP 1 Score: 53.5 bits (127), Expect = 4.160e-6 Identity = 35/75 (46.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query: 7 YCNLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKMLRRL 231
Y N A A ++ + AE CSRAL KAY RRG AR LG+ AA DFR V ++P+N EAA+ LR L
Sbjct: 117 YANRAMAFLRKNMLGAAEEDCSRALAWDDGYVKAYHRRGLARDGLGKHQLAAEDFRRVLQLDPSNKEAAQRLRVL 191
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Match: A0A067QFH1_9AGAM (RPAP3_C domain-containing protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067QFH1_9AGAM) HSP 1 Score: 52.8 bits (125), Expect = 7.840e-6 Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 13 NLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLIEAANDFREVAIIEPTNPEAAKMLRRL 231
N A A +K G+ +AE CS + ++AKAYFRRGQAR+ L +L EA D +E +EP N + L ++
Sbjct: 45 NRAAAYLKLGKNADAERDCSTVIRLNATNAKAYFRRGQARVGLAKLAEAQGDLKEALKLEPGNKSVREELSKV 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200742.5653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig200742.5653.1 >prot_H-elongata_contig200742.5653.1 ID=prot_H-elongata_contig200742.5653.1|Name=mRNA_H-elongata_contig200742.5653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp ACYCNLAFACIKGGEMKEAEAACSRALHKWPSSAKAYFRRGQARLALGRLback to top mRNA from alignment at H-elongata_contig200742:462..761- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig200742.5653.1 ID=mRNA_H-elongata_contig200742.5653.1|Name=mRNA_H-elongata_contig200742.5653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig200742:462..761- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig200742:462..761- >mRNA_H-elongata_contig200742.5653.1 ID=mRNA_H-elongata_contig200742.5653.1|Name=mRNA_H-elongata_contig200742.5653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig200742:462..761- (Himanthalia elongata Himel1 dioecious)back to top |