mRNA_H-elongata_contig200401.5643.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200401.5643.1
Unique NamemRNA_H-elongata_contig200401.5643.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 6.550e-26
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QVNIFLTYTGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            +VN+FLTY GDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLL ++RRD  LDVLSQV
Sbjct:  729 EVNVFLTYMGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQV 785
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.220e-25
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QVNIFLTYTGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            +VN+FLTY GDRYLELEDVDNVHLK+HPLVYTNKTWTPRKLL ++RRD  LDVLSQV
Sbjct: 1217 EVNVFLTYMGDRYLELEDVDNVHLKIHPLVYTNKTWTPRKLLFRMRRDVILDVLSQV 1273
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: I2CQJ8_NANGC (Apt1 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQJ8_NANGC)

HSP 1 Score: 65.5 bits (158), Expect = 1.150e-12
Identity = 28/57 (49.12%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 QVNIFLTYTGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            ++NIF +Y+G +   LED++++HLK+HP++YTNKT + R+LL ++R+D  LD+L QV
Sbjct:    2 EINIFFSYSG-KGGNLEDLEHLHLKVHPIIYTNKTLSARELLARLRKDVVLDLLKQV 57
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: A0A485LBR3_9STRA (Aste57867_19007 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBR3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.140e-6
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    4 VNIFLTYTGDRYL----ELEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            V + LTY   +       LE++    LKLH LVYT+KT T   LLL++RRD  LD+LSQV
Sbjct: 2109 VLVLLTYKSGKSAVTPQHLEEMRGFELKLHSLVYTDKTCTVSDLLLRVRRDILLDILSQV 2168
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: A0A3L6VCD5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VCD5_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.480e-6
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   10 IFLTYTGDRYL-----ELEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            + LTY   +        LE++    LKLH LVYT+KT T  +L+L++RRD  LDVLSQV
Sbjct: 1692 VLLTYKSGKATPTTPQHLEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQV 1750
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: A0A3R6W6P9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6W6P9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.270e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            LE++    LKLH LVYT+KT T  +L+L++RRD  LDVLSQV
Sbjct:  224 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQV 265
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: A0A3L6VUH8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VUH8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.440e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            LE++    LKLH LVYT+KT T  +L+L++RRD  LDVLSQV
Sbjct:  706 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQV 747
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: A0A3R7Y0C2_9STRA (Apt1 domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y0C2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.500e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            LE++    LKLH LVYT+KT T  +L+L++RRD  LDVLSQV
Sbjct: 1992 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQV 2033
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: A0A067C0M8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0M8_SAPPC)

HSP 1 Score: 50.8 bits (120), Expect = 7.500e-6
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    4 VNIFLTYTGDRYL-----ELEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            + I L+Y   + +      LED+    LK+H LVYT+KT T   L L+IRRD  LD+LSQV
Sbjct: 2099 IQILLSYKSGKSVTQPQQHLEDMRGFDLKIHALVYTDKTCTLDDLFLRIRRDIILDILSQV 2159
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BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Match: A0A024TSZ0_9STRA (Apt1 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSZ0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.030e-5
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDACLDVLSQV 171
            LE++    LKLH LVYT+KT T   L+L++RRD  LDVLSQV
Sbjct: 2228 LEEMRGFELKLHSLVYTDKTCTVSDLVLRVRRDILLDVLSQV 2269
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200401.5643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G7J9_ECTSI6.550e-2685.96Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUC4_9PHAE1.220e-2584.21Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
I2CQJ8_NANGC1.150e-1249.12Apt1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A485LBR3_9STRA2.140e-648.33Aste57867_19007 protein n=1 Tax=Aphanomyces stella... [more]
A0A3L6VCD5_9STRA5.480e-647.46Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R6W6P9_9STRA7.270e-659.52Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A3L6VUH8_9STRA7.440e-659.52Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7Y0C2_9STRA7.500e-659.52Apt1 domain-containing protein n=10 Tax=Aphanomyce... [more]
A0A067C0M8_SAPPC7.500e-645.90Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024TSZ0_9STRA1.030e-559.52Apt1 domain-containing protein n=2 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200401contigH-elongata_contig200401:479..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionFMP27, C-terminal
Ec32 orthologEc-22_002130.1
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930128.4355745-CDS-H-elongata_contig200401:478..6491622930128.4355745-CDS-H-elongata_contig200401:478..649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200401 479..649 -
1691679291.9868107-CDS-H-elongata_contig200401:478..6491691679291.9868107-CDS-H-elongata_contig200401:478..649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200401 479..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200401.5643.1prot_H-elongata_contig200401.5643.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200401 479..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200401.5643.1

>prot_H-elongata_contig200401.5643.1 ID=prot_H-elongata_contig200401.5643.1|Name=mRNA_H-elongata_contig200401.5643.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QVNIFLTYTGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLLLKIRRDAC
LDVLSQV
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mRNA from alignment at H-elongata_contig200401:479..649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200401.5643.1 ID=mRNA_H-elongata_contig200401.5643.1|Name=mRNA_H-elongata_contig200401.5643.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig200401:479..649- (Himanthalia elongata Himel1 dioecious)
CAGGTGAACATCTTCCTTACCTATACGGGCGACCGCTACCTGGAGCTCGA
AGACGTGGACAACGTGCACCTGAAGCTGCACCCCCTGGTGTATACGAATA
AGACCTGGACCCCGCGGAAGCTTCTGTTGAAGATTCGGAGAGATGCATGT
CTCGACGTTCTCTCGCAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig200401:479..649-

>mRNA_H-elongata_contig200401.5643.1 ID=mRNA_H-elongata_contig200401.5643.1|Name=mRNA_H-elongata_contig200401.5643.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig200401:479..649- (Himanthalia elongata Himel1 dioecious)
CAGGTGAACATCTTCCTTACCTATACGGGCGACCGCTACCTGGAGCTCGA
AGACGTGGACAACGTGCACCTGAAGCTGCACCCCCTGGTGTATACGAATA
AGACCTGGACCCCGCGGAAGCTTCTGTTGAAGATTCGGAGAGATGCATGT
CTCGACGTTCTCTCGCAGGTTCAGGTGAACATCTTCCTTACCTATACGGG
CGACCGCTACCTGGAGCTCGAAGACGTGGACAACGTGCACCTGAAGCTGC
ACCCCCTGGTGTATACGAATAAGACCTGGACCCCGCGGAAGCTTCTGTTG
AAGATTCGGAGAGATGCATGTCTCGACGTTCTCTCGCAGGTT
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