mRNA_H-elongata_contig20003.5633.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20003.5633.1
Unique NamemRNA_H-elongata_contig20003.5633.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20003.5633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20003contigH-elongata_contig20003:1026..3297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004150.1
Exons3
Model size576
Cds size573
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20003.5633.1prot_H-elongata_contig20003.5633.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20003 1026..3295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930127.4803996-CDS-H-elongata_contig20003:1025..12801622930127.4803996-CDS-H-elongata_contig20003:1025..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20003 1026..1280 +
1691679291.5609438-CDS-H-elongata_contig20003:1025..12801691679291.5609438-CDS-H-elongata_contig20003:1025..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20003 1026..1280 +
1622930127.4936602-CDS-H-elongata_contig20003:1853..20281622930127.4936602-CDS-H-elongata_contig20003:1853..2028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20003 1854..2028 +
1691679291.5707552-CDS-H-elongata_contig20003:1853..20281691679291.5707552-CDS-H-elongata_contig20003:1853..2028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20003 1854..2028 +
1622930127.5106113-CDS-H-elongata_contig20003:3152..32951622930127.5106113-CDS-H-elongata_contig20003:3152..3295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20003 3153..3295 +
1691679291.578106-CDS-H-elongata_contig20003:3152..32951691679291.578106-CDS-H-elongata_contig20003:3152..3295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20003 3153..3295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20003.5633.1

>prot_H-elongata_contig20003.5633.1 ID=prot_H-elongata_contig20003.5633.1|Name=mRNA_H-elongata_contig20003.5633.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
ALYVITGLGIGPSTRFPKIIISTTMKLPSTARGSAASLKAAHHQRRLAFA
LSVGIFTCFAWEVMMSSWTTIPGPRRFFNDLPSLLMAVVCYVFAAFVRYS
VSEVAALTASVPSPVQVVVVVVAHTVIGLPLGLSAWQVAVARAGTNLAPA
LALQSGARGGLIAGGAACGVLSALHFFAESKHQLLVGLLPR
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mRNA from alignment at H-elongata_contig20003:1026..3297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20003.5633.1 ID=mRNA_H-elongata_contig20003.5633.1|Name=mRNA_H-elongata_contig20003.5633.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2272bp|location=Sequence derived from alignment at H-elongata_contig20003:1026..3297+ (Himanthalia elongata Himel1 dioecious)
GCACTTTATGTGATCACTGGCTTAGGAATAGGGCCTAGCACAAGATTCCC
TAAAATCATTATCAGTACAACCATGAAACTACCATCTACCGCGCGTGGGA
GCGCCGCATCGCTGAAAGCGGCCCACCATCAACGGAGGCTGGCTTTTGCT
CTGAGCGTTGGGATTTTTACCTGTTTCGCATGGGAGGTCATGATGTCTTC
GTGGACAACCATACCAGGGCCACGGAGGTTCTTCAACGATCTCCCGTCGC
TACTTGTGAGTTTGCCGCCGATTTTCACTACTGGGTGCGAGCCACTAAAT
GAGCCTCGTGCTCATGCAACTTTATACGATGGGATCTATTCAAACGATGT
GTGCTCATTTTTTTAAAAGGAGTAAGATACCGATACCGCCCAAACTATTG
ACTCTTCACCCGGCATCAGGCCGCAGAGGTGCAGAGTCCATGACACCGCC
TTCGTTCTCTATCCGAATGTGCGAAACGGGCCTGAAAATATCCTACACTG
CGTATAGTCGTGCAAACAAAGGTATTTTTGCATTGACTTCGTGCATCGTG
CGCTCGCCTGACAGAAACGATTACCACCAGGAGCATGTGTCGCAACCCCG
AAAATCTCACGGCTGTAGTTCCCCCTGGGATGCCGTTCTCGATAGAGTTC
CGAGGACCTTTCTTTGTAATAAGAAGTTAATTTTTCTGATGGATCATCAT
CCGCGCGTTCATAGTTTAAAATTTAAAATTTTCAGTTCGAGTGCGGCCGC
AGTGTGTCGCATATGACCCGCTGACGCCGAAAGCCCTTTCCGTTATCATC
CAACCTTCACACACGACTTTATGGACAGATGGCGGTGGTTTGCTATGTCT
TTGCGGCCTTCGTTCGCTACAGCGTGTCCGAAGTAGCCGCCCTTACCGCA
TCCGTGCCGTCCCCGGTACAAGTCGTGGTTGTGGTGGTCGCTCACACTGT
GATCGGTCTTCCCCTAGGCCTCAGCGCGTGGCAGGTGGCGGTGGCAAGAG
CAGGTAGGAGAGAAAGAGGGGCTTGCTCTACCAAAACGTCCTTTATTGTA
TGTACTATAATAAAACTCGCTTAGCCGTAGAAAATTACTTGCTGACTATT
AATACTAAAGACTTGTGTTCAACCTAAACAACATTTCTCCTAGAGTATCA
TGGAGGTACAAGAGTACCTTGAACGTTTTTATCCTTTCCGAATGGTGTGT
TTTTTTTCTACCTTGTGACTACGGGCTGGATTTTGACATCAGCTTATGTG
AGAATTCAATCAAATCAATCAATCGAAAATTATTAGCGCCCGTGTTTGTT
GCGAAATGCTCTCTTACATCAAAAACCTATTTTAGTTTTTAGCCGCCGAC
GTGTAGACTAGTCCCCAGCCTGTTGGAGAGACAGTTGCTTATGATGTCAT
TCACGTAAAGGTTTCCATCAAAATCTAGGTATTATGCCCCAGGTTTTTGG
TTTGGCGGCATGCCTTGCCCCTCGTAGCTAAACTCATGATTCACGCACAG
TAAACCGTGCTTGGAGGTACTCAGCCGTGAACAAATCAAGACCGAAATAA
TTTGCCTTCTCGCAACGGTTACAAGGGAAAATTATTTTCCCCATTCAGCT
GACCACGAGCAGAAGGCAACCAAATCCGGCTGCTCCTTCTGCTAAAAGTG
CGACCAACAACATCCGCAAATAACGCCGACGCGTTCTGCCTTAACGCTCA
TGCATCGATAACATTCAGGAGTGAACCTTGAGCCGCGCTTTTGACGAACC
CGTCGTGCAATCAAGCAAGTCTTTGATATGAAAAAATATGTCCCGAGTAC
CGAATGTCACATCAAACAGTATTAAAAACAGTATTGTGTAAAGCATGCTA
TTAATATTATAGAGGTATCGGGTAAGATAAATTGAGAAATTTGCCCTCTT
CGATGAAGCCTACGATGCCAAGACCACCCCTGACTTACGATATGGTGAAG
AGCTAGGATAGGATGTATACAGATCAGGCTGACGGCTTGAGCCTGGATGA
TCTTCGGGCGGGTAGGTTAGGTACTACAGTACCGGCACTGTATTTTACAG
TACCTTCTCAGGGTATTTCACGTCTCCACTACGGATTTTCTGCTTTCAAC
CACTCATTGTCTCTTCCGTCCGCACAGGCACGAATCTGGCTCCAGCACTA
GCCCTCCAGAGCGGAGCACGTGGAGGGCTCATCGCTGGCGGGGCAGCCTG
CGGCGTCCTTTCTGCCTTGCACTTCTTTGCTGAATCCAAGCACCAACTTC
TCGTCGGACTGCTGCCGCGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig20003:1026..3297+

>mRNA_H-elongata_contig20003.5633.1 ID=mRNA_H-elongata_contig20003.5633.1|Name=mRNA_H-elongata_contig20003.5633.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig20003:1026..3297+ (Himanthalia elongata Himel1 dioecious)
GCACTTTATGTGATCACTGGCTTAGGAATAGGGCCTAGCACAAGATTCCC
TAAAATCATTATCAGTACAACCATGAAACTACCATCTACCGCGCGTGGGA
GCGCCGCATCGCTGAAAGCGGCCCACCATCAACGGAGGCTGGCTTTTGCT
CTGAGCGTTGGGATTTTTACCTGTTTCGCATGGGAGGTCATGATGTCTTC
GTGGACAACCATACCAGGGCCACGGAGGTTCTTCAACGATCTCCCGTCGC
TACTTGCACTTTATGTGATCACTGGCTTAGGAATAGGGCCTAGCACAAGA
TTCCCTAAAATCATTATCAGTACAACCATGAAACTACCATCTACCGCGCG
TGGGAGCGCCGCATCGCTGAAAGCGGCCCACCATCAACGGAGGCTGGCTT
TTGCTCTGAGCGTTGGGATTTTTACCTGTTTCGCATGGGAGGTCATGATG
TCTTCGTGGACAACCATACCAGGGCCACGGAGGTTCTTCAACGATCTCCC
GTCGCTACTTATGGCGGTGGTTTGCTATGTCTTTGCGGCCTTCGTTCGCT
ACAGCGTGTCCGAAGTAGCCGCCCTTACCGCATCCGTGCCGTCCCCGGTA
CAAGTCGTGGTTGTGGTGGTCGCTCACACTGTGATCGGTCTTCCCCTAGG
CCTCAGCGCGTGGCAGGTGGCGGTGGCAAGAGCAGATGGCGGTGGTTTGC
TATGTCTTTGCGGCCTTCGTTCGCTACAGCGTGTCCGAAGTAGCCGCCCT
TACCGCATCCGTGCCGTCCCCGGTACAAGTCGTGGTTGTGGTGGTCGCTC
ACACTGTGATCGGTCTTCCCCTAGGCCTCAGCGCGTGGCAGGTGGCGGTG
GCAAGAGCAGGCACGAATCTGGCTCCAGCACTAGCCCTCCAGAGCGGAGC
ACGTGGAGGGCTCATCGCTGGCGGGGCAGCCTGCGGCGTCCTTTCTGCCT
TGCACTTCTTTGCTGAATCCAAGCACCAACTTCTCGTCGGACTGCTGCCG
CGGGCACGAATCTGGCTCCAGCACTAGCCCTCCAGAGCGGAGCACGTGGA
GGGCTCATCGCTGGCGGGGCAGCCTGCGGCGTCCTTTCTGCCTTGCACTT
CTTTGCTGAATCCAAGCACCAACTTCTCGTCGGACTGCTGCCGCGG
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