mRNA_H-elongata_contig19989.5625.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19989.5625.1
Unique NamemRNA_H-elongata_contig19989.5625.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19989.5625.1 vs. uniprot
Match: A0A6H5JI60_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI60_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.950e-15
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    1 MEWLLWASEGFNRSATAENGGWISPHEIFYGNRPSLSLLPCYQSAYHRVPQQHKMDPRARLCYFLNFGYNHEHDRHKLLGVEARKVVFSHDATW 282
            ME   WA++  N+SAT +N GW SPHE+F G +    +LP  Q  +    ++ K+D +A LCY+LN G NH     K+L     +VV++++ +W
Sbjct:  479 MESAKWAADALNQSATKDNPGWRSPHEMFTGEQGPFRVLPFIQPGFMHEDRRTKLDDQATLCYYLNGGDNHPSSTVKVLKASTGRVVYTNNVSW 572
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19989.5625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI60_9PHAE1.950e-1538.30Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19989contigH-elongata_contig19989:6500..6949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.5752032-CDS-H-elongata_contig19989:6499..69491622930126.5752032-CDS-H-elongata_contig19989:6499..6949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19989 6500..6949 -
1691679291.1596608-CDS-H-elongata_contig19989:6499..69491691679291.1596608-CDS-H-elongata_contig19989:6499..6949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19989 6500..6949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19989.5625.1prot_H-elongata_contig19989.5625.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19989 6500..6949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19989.5625.1

>prot_H-elongata_contig19989.5625.1 ID=prot_H-elongata_contig19989.5625.1|Name=mRNA_H-elongata_contig19989.5625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MEWLLWASEGFNRSATAENGGWISPHEIFYGNRPSLSLLPCYQSAYHRVP
QQHKMDPRARLCYFLNFGYNHEHDRHKLLGVEARKVVFSHDATWHHPEAP
LIPPVTAVENPLTAPLEDIYVSIPAHVPNVAAPAPAPMPAPTMRPPPMSN
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mRNA from alignment at H-elongata_contig19989:6500..6949-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19989.5625.1 ID=mRNA_H-elongata_contig19989.5625.1|Name=mRNA_H-elongata_contig19989.5625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig19989:6500..6949- (Himanthalia elongata Himel1 dioecious)
ATGGAGTGGCTGCTATGGGCCTCGGAGGGCTTTAATCGGTCGGCTACCGC
GGAAAATGGCGGCTGGATCTCCCCTCACGAAATATTCTATGGGAACCGAC
CGTCGTTGTCGCTGCTGCCATGTTACCAGTCGGCGTACCACCGAGTGCCC
CAACAGCACAAGATGGATCCCCGTGCCCGCCTGTGTTATTTTCTGAACTT
TGGCTATAATCACGAGCATGACCGCCATAAACTGCTGGGCGTGGAGGCGA
GGAAAGTTGTGTTTTCGCACGATGCTACGTGGCACCATCCAGAGGCACCG
TTGATTCCCCCGGTAACTGCTGTCGAGAATCCGCTCACTGCCCCACTGGA
AGACATTTACGTGTCGATACCGGCGCATGTGCCCAACGTCGCCGCGCCCG
CTCCTGCGCCGATGCCCGCACCAACAATGCGACCTCCACCTATGTCAAAT
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Coding sequence (CDS) from alignment at H-elongata_contig19989:6500..6949-

>mRNA_H-elongata_contig19989.5625.1 ID=mRNA_H-elongata_contig19989.5625.1|Name=mRNA_H-elongata_contig19989.5625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig19989:6500..6949- (Himanthalia elongata Himel1 dioecious)
ATGGAGTGGCTGCTATGGGCCTCGGAGGGCTTTAATCGGTCGGCTACCGC
GGAAAATGGCGGCTGGATCTCCCCTCACGAAATATTCTATGGGAACCGAC
CGTCGTTGTCGCTGCTGCCATGTTACCAGTCGGCGTACCACCGAGTGCCC
CAACAGCACAAGATGGATCCCCGTGCCCGCCTGTGTTATTTTCTGAACTT
TGGCTATAATCACGAGCATGACCGCCATAAACTGCTGGGCGTGGAGGCGA
GGAAAGTTGTGTTTTCGCACGATGCTACGTGGCACCATCCAGAGGCACCG
TTGATTCCCCCGGTAACTGCTGTCGAGAATCCGCTCACTGCCCCACTGGA
AGACATTTACGTGTCGATACCGGCGCATGTGCCCAACGTCGCCGCGCCCG
CTCCTGCGCCGATGCCCGCACCAACAATGCGACCTCCACCTATGTCAAAT
ATGGAGTGGCTGCTATGGGCCTCGGAGGGCTTTAATCGGTCGGCTACCGC
GGAAAATGGCGGCTGGATCTCCCCTCACGAAATATTCTATGGGAACCGAC
CGTCGTTGTCGCTGCTGCCATGTTACCAGTCGGCGTACCACCGAGTGCCC
CAACAGCACAAGATGGATCCCCGTGCCCGCCTGTGTTATTTTCTGAACTT
TGGCTATAATCACGAGCATGACCGCCATAAACTGCTGGGCGTGGAGGCGA
GGAAAGTTGTGTTTTCGCACGATGCTACGTGGCACCATCCAGAGGCACCG
TTGATTCCCCCGGTAACTGCTGTCGAGAATCCGCTCACTGCCCCACTGGA
AGACATTTACGTGTCGATACCGGCGCATGTGCCCAACGTCGCCGCGCCCG
CTCCTGCGCCGATGCCCGCACCAACAATGCGACCTCCACCTATGTCAAAT
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