mRNA_H-elongata_contig199649.5615.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199649.5615.1
Unique NamemRNA_H-elongata_contig199649.5615.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: A0A6H5JIN0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.070e-17
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   10 RFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTLLS 129
            RFFQLNRLLMWHLPEL++HFE+CGV TNL+ATSWFVTLLS
Sbjct:  764 RFFQLNRLLMWHLPELYDHFEACGVQTNLYATSWFVTLLS 803
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: D8LJB4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB4_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.080e-17
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   10 RFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTLLS 129
            RFFQLNRLLMWHLPEL++HFE+CGV TNL+ATSWFVTLLS
Sbjct:  534 RFFQLNRLLMWHLPELYDHFEACGVQTNLYATSWFVTLLS 573
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: A0A835ZLD6_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLD6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.340e-10
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   10 RFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTLLS 129
            RFFQLNRL++WHLP L  HF +C V  +L+AT WF+TLL+
Sbjct:  350 RFFQLNRLVLWHLPRLHAHFATCDVAADLYATPWFITLLA 389
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: A0A7S4DB79_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB79_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 8.850e-8
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   10 RFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTLLS 129
            RFFQL RL  WHLPEL +   S  +  NL+AT WFVTLL+
Sbjct:   47 RFFQLERLQQWHLPELADRLRSLQIPANLYATGWFVTLLT 86
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: UPI001884DAE8 (LOW QUALITY PROTEIN: rab GTPase-activating protein 1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884DAE8)

HSP 1 Score: 52.0 bits (123), Expect = 1.560e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 RFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTL 123
            RF+QL+RLL  HLPEL+ HF   GV +++FA+ WF+TL
Sbjct:  547 RFYQLDRLLEEHLPELWSHFAELGVESHMFASQWFLTL 584
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: UPI001884A5C0 (rab GTPase-activating protein 1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884A5C0)

HSP 1 Score: 52.0 bits (123), Expect = 1.560e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 RFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTL 123
            RF+QL+RLL  HLPEL+ HF   GV +++FA+ WF+TL
Sbjct:  547 RFYQLDRLLEEHLPELWSHFAELGVESHMFASQWFLTL 584
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: UPI0018856B3F (rab GTPase-activating protein 1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018856B3F)

HSP 1 Score: 52.0 bits (123), Expect = 1.560e-6
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 RFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTL 123
            RF+QL+RLL  HLPEL+ HF   GV +++FA+ WF+TL
Sbjct:  469 RFYQLDRLLEEHLPELWSHFAELGVESHMFASQWFLTL 506
[Close]
BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: A0A6J8ABF2_MYTCO (RABGAP1 n=4 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8ABF2_MYTCO)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   10 RFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTLLS 129
            +F+QL RL+  H+P+LFEHF   G+  ++FA+ WF+TL +
Sbjct:  642 KFYQLERLMEDHIPDLFEHFTEMGLEIHMFASQWFLTLFT 681
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: A0A0K2T7D3_LEPSM (Rab-GAP TBC domain-containing protein (Fragment) n=6 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2T7D3_LEPSM)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 19/38 (50.00%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   16 FQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTLLS 129
            +QL+ LL  H+P+++ HF+S  V+TNL+A+SWF+TL +
Sbjct:  315 YQLDMLLQEHVPDVYAHFQSQSVHTNLYASSWFLTLFT 352
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BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Match: A0A0K2T6Z7_LEPSM (Rab-GAP TBC domain-containing protein (Fragment) n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2T6Z7_LEPSM)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 19/38 (50.00%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   16 FQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTLLS 129
            +QL+ LL  H+P+++ HF+S  V+TNL+A+SWF+TL +
Sbjct:  258 YQLDMLLQEHVPDVYAHFQSQSVHTNLYASSWFLTLFT 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199649.5615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JIN0_9PHAE4.070e-1787.50Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D8LJB4_ECTSI4.080e-1787.50Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZLD6_9STRA3.340e-1062.50Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A7S4DB79_HETAK8.850e-860.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001884DAE81.560e-657.89LOW QUALITY PROTEIN: rab GTPase-activating protein... [more]
UPI001884A5C01.560e-657.89rab GTPase-activating protein 1-like n=1 Tax=Polli... [more]
UPI0018856B3F1.560e-657.89rab GTPase-activating protein 1-like n=1 Tax=Polli... [more]
A0A6J8ABF2_MYTCO1.020e-547.50RABGAP1 n=4 Tax=Mytilus coruscus TaxID=42192 RepID... [more]
A0A0K2T7D3_LEPSM1.020e-550.00Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A0K2T6Z7_LEPSM1.020e-550.00Rab-GAP TBC domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199649contigH-elongata_contig199649:200..328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D8LJB4
Preferred nameFASTKD3
KEGG koko:K19944
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.7998285-CDS-H-elongata_contig199649:199..3281622930125.7998285-CDS-H-elongata_contig199649:199..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199649 200..328 +
1691679290.8446102-CDS-H-elongata_contig199649:199..3281691679290.8446102-CDS-H-elongata_contig199649:199..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199649 200..328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199649.5615.1prot_H-elongata_contig199649.5615.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199649 200..328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199649.5615.1

>prot_H-elongata_contig199649.5615.1 ID=prot_H-elongata_contig199649.5615.1|Name=mRNA_H-elongata_contig199649.5615.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
LCFRFFQLNRLLMWHLPELFEHFESCGVYTNLFATSWFVTLLS
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mRNA from alignment at H-elongata_contig199649:200..328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199649.5615.1 ID=mRNA_H-elongata_contig199649.5615.1|Name=mRNA_H-elongata_contig199649.5615.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig199649:200..328+ (Himanthalia elongata Himel1 dioecious)
CTATGCTTCAGATTTTTCCAGCTGAACCGGCTACTGATGTGGCACCTACC
GGAACTGTTCGAGCACTTTGAATCGTGCGGAGTGTACACAAATCTGTTCG
CAACCAGCTGGTTTGTGACTCTTCTCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig199649:200..328+

>mRNA_H-elongata_contig199649.5615.1 ID=mRNA_H-elongata_contig199649.5615.1|Name=mRNA_H-elongata_contig199649.5615.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig199649:200..328+ (Himanthalia elongata Himel1 dioecious)
CTATGCTTCAGATTTTTCCAGCTGAACCGGCTACTGATGTGGCACCTACC
GGAACTGTTCGAGCACTTTGAATCGTGCGGAGTGTACACAAATCTGTTCG
CAACCAGCTGGTTTGTGACTCTTCTCTCCCTATGCTTCAGATTTTTCCAG
CTGAACCGGCTACTGATGTGGCACCTACCGGAACTGTTCGAGCACTTTGA
ATCGTGCGGAGTGTACACAAATCTGTTCGCAACCAGCTGGTTTGTGACTC
TTCTCTCC
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