mRNA_H-elongata_contig199604.5612.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 144 bits (362), Expect = 2.600e-37 Identity = 85/191 (44.50%), Postives = 113/191 (59.16%), Query Frame = 1
Query: 4 AVVTDCEPSMVKAGRLLDDKKLTTHVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVDAGIKPMTVKQDVPTRWSSTVDSVDRLLELRKVIRTDEVLEGISPSLSDVDWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDLRDHLASARE----YCAPRLDVCAEAQ 564
A TDCEPSMVKAGRLL++ + TH+GC HRL+S F G GV++ALA AR+ +TRY SSQA+ RL + ++ V QDV TRW ST S+ RLL LR+ I E ++ I P L + DW +L+ V+ +P + Q+ E V+ SLVIP DLRD L A E + P + AEA+
Sbjct: 117 ATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESIVAEAK 307
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 140 bits (352), Expect = 5.210e-35 Identity = 81/191 (42.41%), Postives = 111/191 (58.12%), Query Frame = 1
Query: 4 AVVTDCEPSMVKAGRLLDDKKLTTHVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVDAGIKPMTVKQDVPTRWSSTVDSVDRLLELRKVIRTDEVLEGISPSLSDVDWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDLRDHLASARE----YCAPRLDVCAEAQ 564
A+ TDCE SMVKAGRLL++ + TH+GC HRL+S F G GV++ALA AR +TRY SSQA+ RL + C ++ V QDV TRW ST S+ RL+ LR+ I E+++ P L + DW +L+ V+ L+P Q+ E V+ LV P DL+D L A E + P + AEA+
Sbjct: 73 AITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAK 263
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 137 bits (345), Expect = 1.620e-34 Identity = 78/173 (45.09%), Postives = 106/173 (61.27%), Query Frame = 1
Query: 4 AVVTDCEPSMVKAGRLLD-DKKLTTHVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVDAGIKPMTVKQDVPTRWSSTVDSVDRLLELRKVIRTDEVLEGISPSLSDVDWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDLRDHLASA 519
A VTDCEPSM+KAGRLL+ D +H+GC+ HR++S+ VF G + AL AR + RYK SSQ ARL + C ++P++V QDV TRW ST V RLL L K I+ E ++ + P LSD DW +L ++ L P Q+ EG YV+GS+ I +LR+ L +A
Sbjct: 108 ACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAA 279
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 134 bits (336), Expect = 2.540e-33 Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 1 TAVVTDCEPSMVKAGRLLD-DKKLTTHVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVDAGIKPMTVKQDVPTRWSSTVDSVDRLLELRKVIRTDEVLEGISPSLSDVDWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDLRDHLASA 519
TA VTDCEPSMVKAGRLL+ H+GC+ HR++S+ VF G + ALA AR + RYK SSQ + RL + P++V QDV TRW S+ ++RLL L K I+ E + I+P LS+ DW +L ++ L P Q+ EG YV+GS+ +P +LR+ L +A
Sbjct: 143 TACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAA 315
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.080e-28 Identity = 75/191 (39.27%), Postives = 98/191 (51.31%), Query Frame = 1
Query: 4 AVVTDCEPSMVKAGRLLDDKKLTTHVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVDAGIKPMTVKQDVPTRWSSTVDSVDRLLELRKVIRTDEVLEGISPSLSDVDWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDLRDHLASARE----YCAPRLDVCAEAQ 564
A TDCEP MVKAGRLL++ + +H+GC HR +S F G GV++ALA R +TRY SSQA+ RL + C ++ V QDV TRW ST +D I P L++ DW +L+ V+ L P Q+ E V+ SLV DLRD L A E Y P + AEA+
Sbjct: 61 ATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTPREID----------------SIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAK 235
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: UPI001B88A203 (zinc finger BED domain-containing protein 4-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88A203) HSP 1 Score: 78.2 bits (191), Expect = 1.260e-13 Identity = 56/180 (31.11%), Postives = 93/180 (51.67%), Query Frame = 1
Query: 7 VVTDCEPSMVKAGRLLDDKKLTTHVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVDAGIKPMTVKQDVPTRWSSTVDSVDRLLELRK----VIRTDEV---LEGISPSLSDVDWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDLRDHLASARE 525
+VTD +M A R + H+GC H L +A + V+R LA R ++ + S+ ATA L ++ G+K + + QDVPTRW+S D ++R LE++ V+ E+ + GIS +LS+ D I E + L P++ + V E + S+++PL K L + ++E
Sbjct: 117 LVTDNAENMEVAAR---EACCIPHIGCYAHTLNLAAQKGLKVNAVSRILARVRHVVSFFHRSTTATALLKEKTKQLGLKNVKLLQDVPTRWNSACDKLERFLEMQPAIYDVLVAKEIHSNVNGIS-TLSEADITIAEDIVACLLPLKAITTVLCTEKMPTVSIILPLQKKLLTSVLVSKE 292
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: A0A835GBL2_SPOEX (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835GBL2_SPOEX) HSP 1 Score: 75.5 bits (184), Expect = 1.210e-12 Identity = 50/146 (34.25%), Postives = 75/146 (51.37%), Query Frame = 1
Query: 76 HVGCAGHRLQSSA--GVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVD--AGIKPMTVKQDVPTRWSSTVDSVDRLLELRKVIR-TDEVLEGISPSLSDVDWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDL 498
H GC GH L ++F + L +K + YK SS A +L K D A P + Q+VPTRW+ST V R +EL + +R T +L+ P +S+ +W +L ++ L+P GE Y++GSLVI +T+ L
Sbjct: 106 HYGCYGHSLNLIVQDALIF----IQPLLEKVKKIVRHYKTSSTALEKLLKAQTDDKADCIPKRLIQEVPTRWNSTFQMVKRFVELEQYLRATMAILKKDLPIISNEEWLLLYEISKNLQPFDQATETINGEKYMTGSLVIVMTRCL 247
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.560e-12 Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 1 TAVVTDCEPSMVKAGRLL-DDKKLTTHVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVDA--GIKPMTVKQDVPTRW----------SSTVDSVDRLLEL 318
TAV TDCEPSMVK GRLL D ++T +GC +RL+S++ +VF G V + + AR +TRY SSQA RL K+ V G+ V QDV T +S D++D L+EL
Sbjct: 107 TAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRL-KQFVKTYLGVDNKRVIQDVVTGSLVVPFIYDLRNSLEDAIDDLVEL 224
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: A0A835G454_SPOEX (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835G454_SPOEX) HSP 1 Score: 73.2 bits (178), Expect = 2.990e-12 Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 1
Query: 76 HVGCAGHRLQSSA--GVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVD--AGIKPMTVKQDVPTRWSSTVDSVDRLLELRKVIR-TDEVLEGISPSLSDVDWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDL 498
H GC GH L ++F + L +K + YK SS A +L K D + P + Q+VPTRW+ST R +EL + +R T +L+ P +S+ +W +L ++ L+P GE Y++GSLVI +T+ L
Sbjct: 26 HYGCYGHSLNLIVQDALIF----IQPLLEKVKKIVRHYKTSSTALEKLLKAQTDDKSDCIPKRLIQEVPTRWNSTFHMFKRFVELEQYLRATMAILKKDLPIISNEEWLLLSEISKILQPFDQATETISGERYMTGSLVIVMTRCL 167
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Match: UPI001B88C6E0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88C6E0) HSP 1 Score: 73.2 bits (178), Expect = 7.670e-12 Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 1
Query: 76 HVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRYKASSQATARLHKRCVDAGIKPMTVKQDVPTRWSSTVDSVDRLLELRKVIRTDEVLEGISPSLSDV------DWAILEKVKIALEPIRILQRVFEGENYVSGSLVIPLTKDL 498
H+GC H L +A + V+R LA R+ ++ + S+ A A L ++ G+K + + QDVPTRW+S D ++R LEL+ V + I +++D+ D I E + L P++ + V E + S+++PL + L
Sbjct: 126 HIGCYAHTLNLAAQRGLKVNSVSRILARVRRVVSFFHRSTTAAALLKEKTKQQGLKNVKLLQDVPTRWNSACDMLERFLELQPAFYAALVAKEIRSNVNDISTLSEADITIAEDIVSCLLPLKAITTVLCTEKMPTVSIILPLQRKL 272 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199604.5612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig199604.5612.1 >prot_H-elongata_contig199604.5612.1 ID=prot_H-elongata_contig199604.5612.1|Name=mRNA_H-elongata_contig199604.5612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp MVKAGRLLDDKKLTTHVGCAGHRLQSSAGVVFTGDGVTRALANARKTITRback to top mRNA from alignment at H-elongata_contig199604:550..1116- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig199604.5612.1 ID=mRNA_H-elongata_contig199604.5612.1|Name=mRNA_H-elongata_contig199604.5612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=567bp|location=Sequence derived from alignment at H-elongata_contig199604:550..1116- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig199604:550..1116- >mRNA_H-elongata_contig199604.5612.1 ID=mRNA_H-elongata_contig199604.5612.1|Name=mRNA_H-elongata_contig199604.5612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig199604:550..1116- (Himanthalia elongata Himel1 dioecious)back to top |