mRNA_H-elongata_contig199141.5593.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199141.5593.1
Unique NamemRNA_H-elongata_contig199141.5593.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: D7FXP5_ECTSI (Aldose 1-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 9.380e-15
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 PTPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNEQ 120
            PTP+NLTNHAYWNLSG  KR  R HEL +RCDRYLPL+EQ
Sbjct:  241 PTPVNLTNHAYWNLSGDRKRSVRDHELMMRCDRYLPLDEQ 280
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A6H5KFI7_9PHAE (Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.150e-14
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 PTPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNEQ 120
            PTP+NLTNHAYWNLSG  KR  R HEL +RCDRYLPL+EQ
Sbjct:  192 PTPVNLTNHAYWNLSGDRKRSVRDHELMMRCDRYLPLDEQ 231
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A1D2QZ66_9ARCH (Aldose 1-epimerase n=1 Tax=Candidatus Altiarchaeales archaeon WOR_SM1_79 TaxID=1849365 RepID=A0A1D2QZ66_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 3.720e-10
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 TPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNE 117
            TP+NLTNHAYWNL+G+G      HEL L C RYLP+NE
Sbjct:  174 TPVNLTNHAYWNLAGAGSGSILDHELLLNCSRYLPVNE 211
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A517Q274_9PLAN (Aldose 1-epimerase n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q274_9PLAN)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-9
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 PTPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNEQ 120
            PTPIN+TNH YWNL+G+G+     HEL L CD+YLP++ +
Sbjct:  225 PTPINVTNHCYWNLAGAGEGTILDHELLLNCDKYLPVSAE 264
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A2E6NRA6_9BACT (Aldose 1-epimerase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6NRA6_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-9
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 PTPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNE 117
            PTPINLTNH YWNL+G+G     GHEL +  DRYLP++E
Sbjct:  172 PTPINLTNHTYWNLAGAGSGDVLGHELSIVADRYLPVDE 210
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A7C4ISV9_9BACT (Aldose 1-epimerase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4ISV9_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 1.980e-9
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 PTPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNE 117
            PT +NLTNHAYWNL+G+G     GHEL +R DRYLP+++
Sbjct:  223 PTVLNLTNHAYWNLAGAGNGDVLGHELVIRADRYLPVDQ 261
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A2E7KI95_9PLAN (Aldose 1-epimerase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KI95_9PLAN)

HSP 1 Score: 59.7 bits (143), Expect = 2.580e-9
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 TPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNEQ 120
            TPIN+TNH YWNLSG+G      HEL L CD+YLP+ ++
Sbjct:  225 TPINVTNHCYWNLSGAGDGTVLDHELMLNCDKYLPVTDE 263
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A2E3A5C9_9BACT (Aldose 1-epimerase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A5C9_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.410e-9
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 PTPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNE 117
            PTP+NLTNH YWNLSG+G     GH+L +  DRYLP++E
Sbjct:  172 PTPVNLTNHTYWNLSGAGSGEIFGHQLSIVADRYLPVDE 210
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A7W0MCU0_9PLAN (Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0MCU0_9PLAN)

HSP 1 Score: 58.9 bits (141), Expect = 4.810e-9
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 TPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNE 117
            TPINLTNHAYWNLSG G      H + L+CD+YLP++E
Sbjct:  204 TPINLTNHAYWNLSGEGSGTILDHTVTLQCDKYLPVDE 241
[Close]
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Match: A0A1V5KQK2_9BACT (Aldose 1-epimerase n=1 Tax=bacterium ADurb.Bin478 TaxID=1866932 RepID=A0A1V5KQK2_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 6.410e-9
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 TPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNE 117
            TPINLTNHAYWN +G+G+     HEL L+C  YLP++E
Sbjct:  174 TPINLTNHAYWNFAGAGRSTIYDHELMLKCPSYLPVDE 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199141.5593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXP5_ECTSI9.380e-1577.50Aldose 1-epimerase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KFI7_9PHAE1.150e-1477.50Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A1D2QZ66_9ARCH3.720e-1065.79Aldose 1-epimerase n=1 Tax=Candidatus Altiarchaeal... [more]
A0A517Q274_9PLAN1.010e-957.50Aldose 1-epimerase n=5 Tax=Gimesia panareensis Tax... [more]
A0A2E6NRA6_9BACT1.810e-964.10Aldose 1-epimerase n=1 Tax=Planctomycetes bacteriu... [more]
A0A7C4ISV9_9BACT1.980e-961.54Aldose 1-epimerase (Fragment) n=1 Tax=Planctomycet... [more]
A0A2E7KI95_9PLAN2.580e-958.97Aldose 1-epimerase n=8 Tax=Gimesia TaxID=1649453 R... [more]
A0A2E3A5C9_9BACT3.410e-961.54Aldose 1-epimerase n=2 Tax=Planctomycetes bacteriu... [more]
A0A7W0MCU0_9PLAN4.810e-963.16Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacte... [more]
A0A1V5KQK2_9BACT6.410e-960.53Aldose 1-epimerase n=1 Tax=bacterium ADurb.Bin478 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199141contigH-elongata_contig199141:775..894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6.4e-12
Seed eggNOG ortholog2880.D7FXP5
KEGG rclassRC00563
KEGG koko:K01785
KEGG ReactionR01602,R10619
KEGG Pathwayko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130
KEGG ModuleM00632
EggNOG free text desc.aldose 1-epimerase activity
EggNOG OGsCOG2017@1,KOG1604@2759
EC5.1.3.3
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionGalactose mutarotase-like domain
Ec32 orthologEc-28_002510.1
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930124.1687627-CDS-H-elongata_contig199141:774..8941622930124.1687627-CDS-H-elongata_contig199141:774..894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199141 775..894 -
1691679290.2714283-CDS-H-elongata_contig199141:774..8941691679290.2714283-CDS-H-elongata_contig199141:774..894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199141 775..894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199141.5593.1prot_H-elongata_contig199141.5593.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199141 775..894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199141.5593.1

>prot_H-elongata_contig199141.5593.1 ID=prot_H-elongata_contig199141.5593.1|Name=mRNA_H-elongata_contig199141.5593.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
PTPINLTNHAYWNLSGSGKRLARGHELFLRCDRYLPLNEQ
back to top

mRNA from alignment at H-elongata_contig199141:775..894-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199141.5593.1 ID=mRNA_H-elongata_contig199141.5593.1|Name=mRNA_H-elongata_contig199141.5593.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig199141:775..894- (Himanthalia elongata Himel1 dioecious)
CCCACCCCCATCAACCTGACTAATCACGCCTACTGGAATCTCAGTGGGAG
CGGAAAGCGCTTGGCAAGAGGCCACGAGCTCTTCCTTCGCTGCGATCGGT
ACCTTCCGCTCAATGAGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig199141:775..894-

>mRNA_H-elongata_contig199141.5593.1 ID=mRNA_H-elongata_contig199141.5593.1|Name=mRNA_H-elongata_contig199141.5593.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig199141:775..894- (Himanthalia elongata Himel1 dioecious)
CCCACCCCCATCAACCTGACTAATCACGCCTACTGGAATCTCAGTGGGAG
CGGAAAGCGCTTGGCAAGAGGCCACGAGCTCTTCCTTCGCTGCGATCGGT
ACCTTCCGCTCAATGAGCAGCCCACCCCCATCAACCTGACTAATCACGCC
TACTGGAATCTCAGTGGGAGCGGAAAGCGCTTGGCAAGAGGCCACGAGCT
CTTCCTTCGCTGCGATCGGTACCTTCCGCTCAATGAGCAG
back to top