mRNA_H-elongata_contig1990.5584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1990.5584.1
Unique NamemRNA_H-elongata_contig1990.5584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1990.5584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1990contigH-elongata_contig1990:5735..7152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002980.1
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.3234131-CDS-H-elongata_contig1990:5735..58311622930123.3234131-CDS-H-elongata_contig1990:5735..5831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1990 5736..5831 -
1691679289.8544948-CDS-H-elongata_contig1990:5735..58311691679289.8544948-CDS-H-elongata_contig1990:5735..5831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1990 5736..5831 -
1622930123.3383944-CDS-H-elongata_contig1990:6981..71521622930123.3383944-CDS-H-elongata_contig1990:6981..7152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1990 6982..7152 -
1691679289.8643048-CDS-H-elongata_contig1990:6981..71521691679289.8643048-CDS-H-elongata_contig1990:6981..7152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1990 6982..7152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1990.5584.1prot_H-elongata_contig1990.5584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1990 5736..7152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1990.5584.1

>prot_H-elongata_contig1990.5584.1 ID=prot_H-elongata_contig1990.5584.1|Name=mRNA_H-elongata_contig1990.5584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
LAIDEADAVVGAGTPNYLDKVTDAGGWNPELGGMNRWIARYHKEVLRESR
PVIIHVHGDDACALENEISRSARAFTVQREGLRYGDAYQ
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mRNA from alignment at H-elongata_contig1990:5735..7152-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1990.5584.1 ID=mRNA_H-elongata_contig1990.5584.1|Name=mRNA_H-elongata_contig1990.5584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1418bp|location=Sequence derived from alignment at H-elongata_contig1990:5735..7152- (Himanthalia elongata Himel1 dioecious)
CTGGCGATCGATGAGGCTGATGCCGTGGTGGGAGCCGGGACGCCCAATTA
CCTCGACAAAGTGACGGACGCTGGTGGTTGGAATCCGGAGCTGGGAGGTA
TGAACCGCTGGATCGCACGGTACCACAAGGAAGTTTTGAGGGAATCCCGC
CCCGTGATAATCCACGTACATGTGAGTCGGGGTCCGTTTCCACCTTCCAA
CGAGTGCGACCCTGTGATTCATTTAATCCATAGGTGGTAATCTTTGTGTT
AGGTTTGTTCTTAATATTGTATCTGTGGTCCTATTTTTGACGCTTAAAAT
CATAGCGAATGGCGGCCAGAGATTGCCAAAATCTGTTTGGAACTCCGGTA
GCGAGCATTTGAACCAAAGTTCACCCCCTTGATTTAGTAATATCTGGTGC
TTTTTAGGGGTGGGGTACGGGATGGGGAAGGGGCGTGGTCTCCGACACAA
AACATGCATTTACAGAATTAAATTGCTCAATGCATTTGGACGGACTTCCC
GAGAGCTGTCTCTGTCAAACCCTTGAAAACATGTATCAAGCAGGGATTCC
TAGCGCCAACCGTAATTACTGCGTATTTCAATATTTTAATCGCCAATTAC
ACATATGGGTTTCCACACAGCCATCAACGCCATCTTGGGACCTCCGACCC
CAGAACCGTTTGTGAATGCATGTACGTGCAGGACTTTCACTTGCTTGAGC
GTTTAATACGTTAGCCTCAAAGAGGGCTAGCTTTAACCCGTTGTACTCGA
CCCTTGGAATTATTTTCAATATTCACGAGCATAGAGCTAAAAGTTGGTTT
CTTCTCCCTGGAGTTTGACTTCGCTTGACTACTTCAACTGTTGAAATGCA
TACCTATTTCACCTATTTTTTTTTATCAGTTATAGTATGTTGTACATGGA
ACTAAATCCAGGAGGCACTCCTCTGGGCGTTCTTGCAAACATTGGTGTAC
TGTCTGTGAGAAGGTAATTAGTTTGCCGGGTAACTCACTTGCCTGTATGT
TAGTCTGTCGGTGAAGCTGCTTATATTCCCACCCTGCTGGTATCTTAGAA
GGGAGACCAGCTTATACCGCTAGCAAAAATTGTGCTGTTTTACCGCCACC
TCCACCTATTCATTCCTCAATATGATTTTGCAGAACTAAACTCGTTAAGT
TAGTCCTCTCCCGCAAACGATGCAAAGCGTTTTTTATTTTTTTAAACGGC
TTCGGGGGACAGCTCCCGAGCACGGAAGCTTTAACGCGATCCAATCACCC
CTCGTGTCTCACCGCTACCACCACAACGACGTCAACATCAACCATGATTG
TAACCGTTACGTCGACGAAAGGGTGACGACGCCTGCGCGCTGGAGAATGA
GATCTCGCGATCGGCGAGAGCTTTCACGGTCCAGCGAGAGGGACTAAGAT
ATGGTGACGCTTACCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig1990:5735..7152-

>mRNA_H-elongata_contig1990.5584.1 ID=mRNA_H-elongata_contig1990.5584.1|Name=mRNA_H-elongata_contig1990.5584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig1990:5735..7152- (Himanthalia elongata Himel1 dioecious)
CTGGCGATCGATGAGGCTGATGCCGTGGTGGGAGCCGGGACGCCCAATTA
CCTCGACAAAGTGACGGACGCTGGTGGTTGGAATCCGGAGCTGGGAGGTA
TGAACCGCTGGATCGCACGGTACCACAAGGAAGTTTTGAGGGAATCCCGC
CCCGTGATAATCCACGTACATCTGGCGATCGATGAGGCTGATGCCGTGGT
GGGAGCCGGGACGCCCAATTACCTCGACAAAGTGACGGACGCTGGTGGTT
GGAATCCGGAGCTGGGAGGTATGAACCGCTGGATCGCACGGTACCACAAG
GAAGTTTTGAGGGAATCCCGCCCCGTGATAATCCACGTACATGGTGACGA
CGCCTGCGCGCTGGAGAATGAGATCTCGCGATCGGCGAGAGCTTTCACGG
TCCAGCGAGAGGGACTAAGATATGGTGACGCTTACCAAGGTGACGACGCC
TGCGCGCTGGAGAATGAGATCTCGCGATCGGCGAGAGCTTTCACGGTCCA
GCGAGAGGGACTAAGATATGGTGACGCTTACCAA
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