mRNA_H-elongata_contig198845.5577.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198845.5577.1
Unique NamemRNA_H-elongata_contig198845.5577.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 4.880e-16
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIVKELT 135
            RHEKTQVKKENDRTRLTHVQNANAGPVFLTYR++E VDEIV  +T
Sbjct:  122 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRTSETVDEIVGRMT 166
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: A0A836CBS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.340e-13
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIVKEL 132
            RHEKTQVKKENDRTRLT+VQNAN GPVFLTYR N  V+ IV ++
Sbjct:  122 RHEKTQVKKENDRTRLTYVQNANVGPVFLTYRDNAAVNSIVNQV 165
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: W7TNQ3_9STRA (Uncharacterized conserved protein UCP033563 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNQ3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.550e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIVKELT 135
            RHEKTQVKKENDRTRLT+ QNAN GPVFL Y+ ++ +DEIV+ +T
Sbjct:  121 RHEKTQVKKENDRTRLTYTQNANVGPVFLMYKPHDALDEIVRTVT 165
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: A0A1F3VML3_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrionales bacterium RIFOXYC1_FULL_37_79 TaxID=1797395 RepID=A0A1F3VML3_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 3.560e-7
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIVKELT 135
            +HE T+  KE+DRTR     NANAGPVFLTYR N+ +D+IV + T
Sbjct:  121 KHELTRKNKEDDRTRHVITLNANAGPVFLTYRDNKNIDQIVNQFT 165
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: A0A1R2BV90_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BV90_9CILI)

HSP 1 Score: 53.9 bits (128), Expect = 3.560e-7
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIVKELT 135
            +HE T+ KKE DRT+LT +Q AN GPVFLTYR+ +++D I + +T
Sbjct:  121 KHELTRKKKEEDRTKLTDIQGANVGPVFLTYRNCDRIDAITQIVT 165
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: A0A7Y3U9X0_9BACT (DUF1015 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y3U9X0_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.660e-7
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIVKELT 135
            +HE+T+  KE+DRTR     NANAGPVFLTYRS E +D +V ++T
Sbjct:  120 KHERTRQAKEDDRTRHVLTLNANAGPVFLTYRSLEPIDRVVADVT 164
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: A0A257U5E2_9BACT (Uncharacterized protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A257U5E2_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.660e-7
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIV 123
            RHE T+  KE+DRTR TH  NANAGPVFLTYR   ++D IV
Sbjct:  121 RHEFTRKDKEDDRTRHTHELNANAGPVFLTYRKRAEIDAIV 161
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: A0A522MLS7_9BACT (DUF1015 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A522MLS7_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.660e-7
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIV 123
            RHE T+  KE+DRTR TH  NANAGPVFLTYR   ++D IV
Sbjct:  121 RHEFTRKDKEDDRTRHTHELNANAGPVFLTYRKRAEIDAIV 161
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: A0A1F2QF65_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RBG_13_68_16 TaxID=1797171 RepID=A0A1F2QF65_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 9.110e-7
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIV 123
            RHE T+  KE+DRTR TH  NANAGPVFLTYR    VD IV
Sbjct:  121 RHEFTRKDKEDDRTRHTHELNANAGPVFLTYRKRADVDAIV 161
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BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Match: A0A078AGH2_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AGH2_STYLE)

HSP 1 Score: 52.8 bits (125), Expect = 9.120e-7
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSN----EKVDEIVKE 129
            +HEKT  KKE DRT+L  +QNAN GPVFLTY+      EKV+ IVK+
Sbjct:  121 KHEKTLPKKEEDRTKLIDIQNANIGPVFLTYKKGDSIKEKVNSIVKQ 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198845.5577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D7_ECTSI4.880e-1686.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS0_9STRA9.340e-1377.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TNQ3_9STRA4.550e-1271.11Uncharacterized conserved protein UCP033563 n=3 Ta... [more]
A0A1F3VML3_9PROT3.560e-757.78Uncharacterized protein n=1 Tax=Bdellovibrionales ... [more]
A0A1R2BV90_9CILI3.560e-755.56Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A7Y3U9X0_9BACT6.660e-757.78DUF1015 domain-containing protein n=1 Tax=Planctom... [more]
A0A257U5E2_9BACT6.660e-765.85Uncharacterized protein n=2 Tax=unclassified Acido... [more]
A0A522MLS7_9BACT6.660e-765.85DUF1015 domain-containing protein n=1 Tax=Acidobac... [more]
A0A1F2QF65_9BACT9.110e-768.29Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A078AGH2_STYLE9.120e-759.57Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198845contigH-elongata_contig198845:675..809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog2880.D7G0D7
EggNOG free text desc.Protein of unknown function (DUF1015)
EggNOG OGs2SMYX@2759,COG4198@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930122.6536367-CDS-H-elongata_contig198845:674..8091622930122.6536367-CDS-H-elongata_contig198845:674..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198845 675..809 +
1691679289.5780318-CDS-H-elongata_contig198845:674..8091691679289.5780318-CDS-H-elongata_contig198845:674..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198845 675..809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198845.5577.1prot_H-elongata_contig198845.5577.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198845 675..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198845.5577.1

>prot_H-elongata_contig198845.5577.1 ID=prot_H-elongata_contig198845.5577.1|Name=mRNA_H-elongata_contig198845.5577.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRSNEKVDEIVKELT
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mRNA from alignment at H-elongata_contig198845:675..809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198845.5577.1 ID=mRNA_H-elongata_contig198845.5577.1|Name=mRNA_H-elongata_contig198845.5577.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig198845:675..809+ (Himanthalia elongata Himel1 dioecious)
AGGCACGAAAAGACGCAGGTCAAGAAAGAGAACGACCGCACCAGACTCAC
CCACGTGCAGAATGCCAACGCGGGGCCGGTATTTCTCACCTACCGCTCCA
ACGAGAAGGTGGACGAAATCGTCAAGGAGTTGACA
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Coding sequence (CDS) from alignment at H-elongata_contig198845:675..809+

>mRNA_H-elongata_contig198845.5577.1 ID=mRNA_H-elongata_contig198845.5577.1|Name=mRNA_H-elongata_contig198845.5577.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig198845:675..809+ (Himanthalia elongata Himel1 dioecious)
AGGCACGAAAAGACGCAGGTCAAGAAAGAGAACGACCGCACCAGACTCAC
CCACGTGCAGAATGCCAACGCGGGGCCGGTATTTCTCACCTACCGCTCCA
ACGAGAAGGTGGACGAAATCGTCAAGGAGTTGACAAGGCACGAAAAGACG
CAGGTCAAGAAAGAGAACGACCGCACCAGACTCACCCACGTGCAGAATGC
CAACGCGGGGCCGGTATTTCTCACCTACCGCTCCAACGAGAAGGTGGACG
AAATCGTCAAGGAGTTGACA
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