mRNA_H-elongata_contig198770.5574.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.820e-15 Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 22 SWWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVTV 204
+WWD+H+A PLL REL+ R+ CV ASSA+SERLFSKAG TLTK+RS G RVAQLVT+
Sbjct: 504 TWWDQHKATFPLL--RELSHRILCVPASSAASERLFSKAGLTLTKQRSLLAGNRVAQLVTL 562
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A6H5KHJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ9_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 9.860e-7 Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 25 WWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVTV 204
WW++ Q R+LA RV CV A SASS+RLF K G KR++ +G RVAQ +TV
Sbjct: 409 WWEQGQQRWSFPSLRQLAMRVLCVPACSASSKRLFFKTGVVGNSKRARLRGSRVAQRLTV 468
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A8J9UI59_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UI59_BRAAE) HSP 1 Score: 53.1 bits (126), Expect = 1.850e-6 Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 22 SWWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLV 198
WW E ++ P L+ +LA + CV A+S SER+FSKAG T+T +R++ G +V QLV
Sbjct: 445 KWWQERKSIYPRLY--QLAVKKLCVVATSVPSERIFSKAGQTVTDRRNRLSGEKVRQLV 501
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A1A8SIR0_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8SIR0_9TELE) HSP 1 Score: 50.1 bits (118), Expect = 2.790e-6 Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 25 WWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLV 198
WW EH+ P L +LA R V ASS +ER+FSKAG L+K+RS+ KG V L+
Sbjct: 34 WWQEHEQTFPAL--SKLAVRYLGVVASSVPAERIFSKAGEVLSKRRSRLKGKTVNMLL 89
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: J9KYE6_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KYE6_ACYPI) HSP 1 Score: 50.1 bits (118), Expect = 2.270e-5 Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 28 WDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVTVG 207
W++ ++ PL++ A +V CV A+S SERLFSKAG TL+K+R++ G R+ +L+ +G
Sbjct: 493 WEDMKSVFPLMYME--AQKVLCVVATSVPSERLFSKAGATLSKERNRLLGKRLFKLLFLG 550
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: UPI0018914D3C (zinc finger BED domain-containing protein 4-like n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=UPI0018914D3C) HSP 1 Score: 48.5 bits (114), Expect = 2.910e-5 Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 25 WWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLV 198
WW EH+ P L +LA R ++A+S +ER+FSKAG L+KKR++ KG V ++
Sbjct: 87 WWKEHEPTFPAL--SKLAVRYMGITATSVPAERVFSKAGEVLSKKRNRLKGKTVNMIL 142
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A8C6PX52_NOTFU (BED-type domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6PX52_NOTFU) HSP 1 Score: 49.7 bits (117), Expect = 3.110e-5 Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 25 WWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVT 201
WW EH P L +LA R + ASS +ER+FSKAG L KKRS+ KG +A+ +T
Sbjct: 476 WWQEHGQTFPAL--SKLAVRYLGIVASSVPAERIFSKAGEVLRKKRSRLKGKTLAKQLT 532
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A8B8FAF4_9HEMI (zinc finger BED domain-containing protein 1-like n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8FAF4_9HEMI) HSP 1 Score: 49.3 bits (116), Expect = 4.230e-5 Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 28 WDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVTVG 207
W++ ++ PL++ A +V CV A+S SERLFSKAG TL+K+R++ G R+ +L+ +G
Sbjct: 424 WEDMKSVYPLIYME--AQKVFCVVATSVPSERLFSKAGATLSKERNRLLGKRLFKLLFLG 481 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198770.5574.1 >prot_H-elongata_contig198770.5574.1 ID=prot_H-elongata_contig198770.5574.1|Name=mRNA_H-elongata_contig198770.5574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp MGSWWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSback to top mRNA from alignment at H-elongata_contig198770:860..1066- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198770.5574.1 ID=mRNA_H-elongata_contig198770.5574.1|Name=mRNA_H-elongata_contig198770.5574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig198770:860..1066- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198770:860..1066- >mRNA_H-elongata_contig198770.5574.1 ID=mRNA_H-elongata_contig198770.5574.1|Name=mRNA_H-elongata_contig198770.5574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig198770:860..1066- (Himanthalia elongata Himel1 dioecious)back to top |