mRNA_H-elongata_contig198770.5574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198770.5574.1
Unique NamemRNA_H-elongata_contig198770.5574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.820e-15
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   22 SWWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVTV 204
            +WWD+H+A  PLL  REL+ R+ CV ASSA+SERLFSKAG TLTK+RS   G RVAQLVT+
Sbjct:  504 TWWDQHKATFPLL--RELSHRILCVPASSAASERLFSKAGLTLTKQRSLLAGNRVAQLVTL 562          
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A6H5KHJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.860e-7
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   25 WWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVTV 204
            WW++ Q        R+LA RV CV A SASS+RLF K G     KR++ +G RVAQ +TV
Sbjct:  409 WWEQGQQRWSFPSLRQLAMRVLCVPACSASSKRLFFKTGVVGNSKRARLRGSRVAQRLTV 468          
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A8J9UI59_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UI59_BRAAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.850e-6
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   22 SWWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLV 198
             WW E ++  P L+  +LA +  CV A+S  SER+FSKAG T+T +R++  G +V QLV
Sbjct:  445 KWWQERKSIYPRLY--QLAVKKLCVVATSVPSERIFSKAGQTVTDRRNRLSGEKVRQLV 501          
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A1A8SIR0_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8SIR0_9TELE)

HSP 1 Score: 50.1 bits (118), Expect = 2.790e-6
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   25 WWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLV 198
            WW EH+   P L   +LA R   V ASS  +ER+FSKAG  L+K+RS+ KG  V  L+
Sbjct:   34 WWQEHEQTFPAL--SKLAVRYLGVVASSVPAERIFSKAGEVLSKRRSRLKGKTVNMLL 89          
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: J9KYE6_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KYE6_ACYPI)

HSP 1 Score: 50.1 bits (118), Expect = 2.270e-5
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   28 WDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVTVG 207
            W++ ++  PL++    A +V CV A+S  SERLFSKAG TL+K+R++  G R+ +L+ +G
Sbjct:  493 WEDMKSVFPLMYME--AQKVLCVVATSVPSERLFSKAGATLSKERNRLLGKRLFKLLFLG 550          
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: UPI0018914D3C (zinc finger BED domain-containing protein 4-like n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=UPI0018914D3C)

HSP 1 Score: 48.5 bits (114), Expect = 2.910e-5
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   25 WWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLV 198
            WW EH+   P L   +LA R   ++A+S  +ER+FSKAG  L+KKR++ KG  V  ++
Sbjct:   87 WWKEHEPTFPAL--SKLAVRYMGITATSVPAERVFSKAGEVLSKKRNRLKGKTVNMIL 142          
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A8C6PX52_NOTFU (BED-type domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6PX52_NOTFU)

HSP 1 Score: 49.7 bits (117), Expect = 3.110e-5
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   25 WWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVT 201
            WW EH    P L   +LA R   + ASS  +ER+FSKAG  L KKRS+ KG  +A+ +T
Sbjct:  476 WWQEHGQTFPAL--SKLAVRYLGIVASSVPAERIFSKAGEVLRKKRSRLKGKTLAKQLT 532          
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Match: A0A8B8FAF4_9HEMI (zinc finger BED domain-containing protein 1-like n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8FAF4_9HEMI)

HSP 1 Score: 49.3 bits (116), Expect = 4.230e-5
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   28 WDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRSKFKGPRVAQLVTVG 207
            W++ ++  PL++    A +V CV A+S  SERLFSKAG TL+K+R++  G R+ +L+ +G
Sbjct:  424 WEDMKSVYPLIYME--AQKVFCVVATSVPSERLFSKAGATLSKERNRLLGKRLFKLLFLG 481          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198770.5574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE2.820e-1567.21Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KHJ9_9PHAE9.860e-748.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A8J9UI59_BRAAE1.850e-645.76Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A1A8SIR0_9TELE2.790e-648.28Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
J9KYE6_ACYPI2.270e-543.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ac... [more]
UPI0018914D3C2.910e-543.10zinc finger BED domain-containing protein 4-like n... [more]
A0A8C6PX52_NOTFU3.110e-547.46BED-type domain-containing protein n=1 Tax=Nothobr... [more]
A0A8B8FAF4_9HEMI4.230e-543.33zinc finger BED domain-containing protein 1-like n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198770contigH-elongata_contig198770:860..1066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930122.0536602-CDS-H-elongata_contig198770:859..10511622930122.0536602-CDS-H-elongata_contig198770:859..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198770 860..1051 -
1691679289.283748-CDS-H-elongata_contig198770:859..10511691679289.283748-CDS-H-elongata_contig198770:859..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198770 860..1051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930122.0709538-UTR-H-elongata_contig198770:1051..10661622930122.0709538-UTR-H-elongata_contig198770:1051..1066Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198770 1052..1066 -
1691679289.2921617-UTR-H-elongata_contig198770:1051..10661691679289.2921617-UTR-H-elongata_contig198770:1051..1066Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198770 1052..1066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198770.5574.1prot_H-elongata_contig198770.5574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198770 860..1051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198770.5574.1

>prot_H-elongata_contig198770.5574.1 ID=prot_H-elongata_contig198770.5574.1|Name=mRNA_H-elongata_contig198770.5574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MGSWWDEHQAALPLLFFRELATRVRCVSASSASSERLFSKAGFTLTKKRS
KFKGPRVAQLVTVG
back to top

mRNA from alignment at H-elongata_contig198770:860..1066-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198770.5574.1 ID=mRNA_H-elongata_contig198770.5574.1|Name=mRNA_H-elongata_contig198770.5574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig198770:860..1066- (Himanthalia elongata Himel1 dioecious)
CGAGTAGTTGATTACATGGGATCGTGGTGGGATGAACACCAAGCGGCCCT TCCACTTCTTTTTTTCCGGGAACTCGCCACGCGTGTCCGGTGCGTCTCGG CTTCGTCGGCGTCGTCAGAGCGTCTGTTCTCCAAGGCAGGCTTTACTTTG ACGAAGAAACGCTCTAAGTTCAAGGGACCGAGGGTGGCCCAGCTGGTCAC CGTGGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig198770:860..1066-

>mRNA_H-elongata_contig198770.5574.1 ID=mRNA_H-elongata_contig198770.5574.1|Name=mRNA_H-elongata_contig198770.5574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig198770:860..1066- (Himanthalia elongata Himel1 dioecious)
ATGGGATCGTGGTGGGATGAACACCAAGCGGCCCTTCCACTTCTTTTTTT
CCGGGAACTCGCCACGCGTGTCCGGTGCGTCTCGGCTTCGTCGGCGTCGT
CAGAGCGTCTGTTCTCCAAGGCAGGCTTTACTTTGACGAAGAAACGCTCT
AAGTTCAAGGGACCGAGGGTGGCCCAGCTGGTCACCGTGGGTATGGGATC
GTGGTGGGATGAACACCAAGCGGCCCTTCCACTTCTTTTTTTCCGGGAAC
TCGCCACGCGTGTCCGGTGCGTCTCGGCTTCGTCGGCGTCGTCAGAGCGT
CTGTTCTCCAAGGCAGGCTTTACTTTGACGAAGAAACGCTCTAAGTTCAA
GGGACCGAGGGTGGCCCAGCTGGTCACCGTGGGT
back to top