mRNA_H-elongata_contig198678.5569.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198678.5569.1
Unique NamemRNA_H-elongata_contig198678.5569.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: D8LFP8_ECTSI (Similar to peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFP8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-19
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   25 TQVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFER 165
            T+VV NIL NPA+VKFRELR NNKTIQRAVL CHGGREFLSLLGFE+
Sbjct:   37 TKVVENILSNPADVKFRELRANNKTIQRAVLSCHGGREFLSLLGFEK 83          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: A0A7S4M1Z1_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M1Z1_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 9.530e-8
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    7 TCLCLPTQVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFE 162
            T L    +VV NIL +PA  K+R L+V NKTI+  VL C GGR  L  +GFE
Sbjct:   13 TALSTLLKVVGNILADPAEPKYRTLKVENKTIKEKVLSCPGGRALLLSVGFE 64          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: A0A0M0JXN5_9EUKA (Thioredoxin domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXN5_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 1.660e-7
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   28 QVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFER 165
            +++RNIL +P   K+R L+ +NKT++  VL C GG EFL   GFER
Sbjct:  144 KILRNILKDPTEPKYRALKADNKTLKEKVLACRGGSEFLLAAGFER 189          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: A0A1S2YDV4_CICAR (plant UBX domain-containing protein 2 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YDV4_CICAR)

HSP 1 Score: 51.2 bits (121), Expect = 5.160e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   28 QVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFE 162
            +++RNI+  P NVKFR++R+NN  I+ A+    GG E LS LGFE
Sbjct:  189 KLLRNIVREPENVKFRKIRMNNPKIKEAIADVIGGVELLSFLGFE 233          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: A0A2Z6MQ22_TRISU (UBX domain-containing protein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2Z6MQ22_TRISU)

HSP 1 Score: 51.2 bits (121), Expect = 5.160e-6
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   28 QVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFE 162
            +++RNI+  P NVKFR++R++N  I+ AV   +GG E LS LGFE
Sbjct:  187 KLLRNIVKEPENVKFRKIRLSNPKIKEAVAEVNGGIELLSFLGFE 231          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: A0A6J2W7V0_CHACN (UBX domain-containing protein 6 isoform X1 n=2 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W7V0_CHACN)

HSP 1 Score: 50.8 bits (120), Expect = 7.050e-6
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   34 VRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFE 162
            + NI  NPA  K+R+++V+NK  Q  V G  G REFL  LGFE
Sbjct:  178 IENICKNPAEEKYRKIKVSNKIFQEKVRGIEGSREFLQALGFE 220          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: A0A5J4XGV6_9CHLO (UBX domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XGV6_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 1.810e-5
Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   25 TQVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFE 162
            ++V+RNI+++PA  K+R+L++NNK +Q+ V+   G  E L   GFE
Sbjct:  130 SKVLRNIVEHPAEAKYRKLKLNNKKVQQCVVNVDGSLELLQASGFE 175          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: I1K5Q4_SOYBN (UBX domain-containing protein n=4 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1K5Q4_SOYBN)

HSP 1 Score: 49.3 bits (116), Expect = 2.470e-5
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   28 QVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFE 162
            +++RNI   PANVKFR +R+NN  I+ AV    GG E LS +GFE
Sbjct:  184 KLLRNIGREPANVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFE 228          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: A0A7S3FHF4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FHF4_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 2.980e-5
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1
Query:    4 STCLCLPTQVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFE 162
            +  L +  +VV NIL NPA+ K+R L+V N  ++  V  C GGRE L   G+ 
Sbjct:   43 NVALHIMLKVVTNILSNPADPKYRTLKVENSALKAKVFACPGGRELLLAAGWR 95          
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Match: S8CCH2_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CCH2_9LAMI)

HSP 1 Score: 48.9 bits (115), Expect = 3.380e-5
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   28 QVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSLLGFE 162
            ++VRNIL +P+N KFR++R  N  I+ A++   GG EFL  +GF+
Sbjct:  159 KLVRNILKDPSNPKFRKVRTGNIKIKEAIIDVAGGVEFLEFIGFK 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198678.5569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LFP8_ECTSI2.460e-1985.11Similar to peptide-N(4)-(N-acetyl-beta-glucosaminy... [more]
A0A7S4M1Z1_9EUKA9.530e-851.92Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A0M0JXN5_9EUKA1.660e-750.00Thioredoxin domain-containing protein n=1 Tax=Chry... [more]
A0A1S2YDV4_CICAR5.160e-651.11plant UBX domain-containing protein 2 n=1 Tax=Cice... [more]
A0A2Z6MQ22_TRISU5.160e-651.11UBX domain-containing protein n=2 Tax=Trifolium Ta... [more]
A0A6J2W7V0_CHACN7.050e-651.16UBX domain-containing protein 6 isoform X1 n=2 Tax... [more]
A0A5J4XGV6_9CHLO1.810e-543.48UBX domain-containing protein n=1 Tax=Trebouxia sp... [more]
I1K5Q4_SOYBN2.470e-553.33UBX domain-containing protein n=4 Tax=Glycine subg... [more]
A0A7S3FHF4_9EUKA2.980e-541.51Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
S8CCH2_9LAMI3.380e-546.67Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198678contigH-elongata_contig198678:72..239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930121.4543364-CDS-H-elongata_contig198678:71..2391622930121.4543364-CDS-H-elongata_contig198678:71..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198678 72..239 -
1691679288.958493-CDS-H-elongata_contig198678:71..2391691679288.958493-CDS-H-elongata_contig198678:71..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198678 72..239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198678.5569.1prot_H-elongata_contig198678.5569.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198678 72..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198678.5569.1

>prot_H-elongata_contig198678.5569.1 ID=prot_H-elongata_contig198678.5569.1|Name=mRNA_H-elongata_contig198678.5569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
FSTCLCLPTQVVRNILDNPANVKFRELRVNNKTIQRAVLGCHGGREFLSL
LGFER*
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mRNA from alignment at H-elongata_contig198678:72..239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198678.5569.1 ID=mRNA_H-elongata_contig198678.5569.1|Name=mRNA_H-elongata_contig198678.5569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig198678:72..239- (Himanthalia elongata Himel1 dioecious)
TTTTCTACTTGTCTCTGTCTTCCCACGCAGGTTGTAAGGAACATCTTAGA CAATCCGGCCAACGTGAAATTTCGAGAACTTCGGGTGAATAACAAAACCA TCCAGCGAGCAGTGCTCGGCTGCCACGGCGGCAGGGAGTTCCTCTCTCTT CTCGGGTTCGAAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig198678:72..239-

>mRNA_H-elongata_contig198678.5569.1 ID=mRNA_H-elongata_contig198678.5569.1|Name=mRNA_H-elongata_contig198678.5569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig198678:72..239- (Himanthalia elongata Himel1 dioecious)
TTTTCTACTTGTCTCTGTCTTCCCACGCAGGTTGTAAGGAACATCTTAGA
CAATCCGGCCAACGTGAAATTTCGAGAACTTCGGGTGAATAACAAAACCA
TCCAGCGAGCAGTGCTCGGCTGCCACGGCGGCAGGGAGTTCCTCTCTCTT
CTCGGGTTCGAAAGGTGATTTTCTACTTGTCTCTGTCTTCCCACGCAGGT
TGTAAGGAACATCTTAGACAATCCGGCCAACGTGAAATTTCGAGAACTTC
GGGTGAATAACAAAACCATCCAGCGAGCAGTGCTCGGCTGCCACGGCGGC
AGGGAGTTCCTCTCTCTTCTCGGGTTCGAAAGGTGA
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