mRNA_H-elongata_contig19853.5565.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19853.5565.1
Unique NamemRNA_H-elongata_contig19853.5565.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19853.5565.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.730e-12
Identity = 61/137 (44.53%), Postives = 71/137 (51.82%), Query Frame = 1 
Query: 1054 VLAGDAALAYDRDVLGGDGLAE------------------YAVG----CQVSDPGGTAVSPPQGPTRSRARRLSGSTGLSNGLRSSRGG------ENPISEVRQSGQDEVGAGVEAVAVTVTPGELKKARVIGQVWK 1380
            + A  AALAYD+DVLGGDGL                     A G    C VSD GG AV  PQGP   RAR+  G    +   + SR        E  I +V Q+GQDEVGAG  AVAVTVTP EL +A +IGQ  +
Sbjct: 1275 MRAAGAALAYDQDVLGGDGLGGDGEEEEEPDTVDGVLGKFLATGDYDSCHVSDAGGAAVYSPQGPGGDRARKAGGEAEKAAPEKDSRYNPLPGRRERQIPQVLQAGQDEVGAGAGAVAVTVTPEELSEALLIGQAGR 1411
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BLAST of mRNA_H-elongata_contig19853.5565.1 vs. uniprot
Match: A0A6H5JWV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.380e-11
Identity = 62/132 (46.97%), Postives = 69/132 (52.27%), Query Frame = 1 
Query: 1069 AALAYDRDVLGGDGLAEY------------------AVG----CQVSDPGGTAVSPPQGPTRSRARRLSGSTGLS--------NGLRSSRGGENPISEVRQSGQDEVGAGVEAVAVTVTPGELKKARVIGQV 1374
            AALAYD+DVLGGDGL                     A G    C VSD GG AV  PQGP   RAR+  G    +        N L   R  E  I +V Q+GQDEVGAG  AVAVTVTP EL +A +IGQV
Sbjct: 1200 AALAYDQDVLGGDGLGXXXXXXEKPDTVDGVLGKFLATGGYDSCHVSDAGGRAVYSPQGPGGGRARKAGGEAEKAAAETDSQHNPLPGRR--ERQIPQVLQAGQDEVGAGAGAVAVTVTPEELGEALLIGQV 1329
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19853.5565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9D8_ECTSI2.730e-1244.53MutL protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWV7_9PHAE1.380e-1146.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19853contigH-elongata_contig19853:3431..5504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue3.5e-13
Seed eggNOG ortholog2880.D7G9D8
Preferred nameMLH3
KEGG koko:K08739
KEGG Pathwayko03430,map03430
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005712,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:1990837
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1977@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size1629
Cds size1383
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19853.5565.1prot_H-elongata_contig19853.5565.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19853 3653..5480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930121.1005118-UTR-H-elongata_contig19853:3430..36521622930121.1005118-UTR-H-elongata_contig19853:3430..3652Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19853 3431..3652 -
1691679288.81607-UTR-H-elongata_contig19853:3430..36521691679288.81607-UTR-H-elongata_contig19853:3430..3652Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19853 3431..3652 -
1622930121.1537218-UTR-H-elongata_contig19853:5480..55041622930121.1537218-UTR-H-elongata_contig19853:5480..5504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19853 5481..5504 -
1691679288.8465228-UTR-H-elongata_contig19853:5480..55041691679288.8465228-UTR-H-elongata_contig19853:5480..5504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19853 5481..5504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930121.1199486-CDS-H-elongata_contig19853:3652..39291622930121.1199486-CDS-H-elongata_contig19853:3652..3929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19853 3653..3929 -
1691679288.8274918-CDS-H-elongata_contig19853:3652..39291691679288.8274918-CDS-H-elongata_contig19853:3652..3929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19853 3653..3929 -
1622930121.1386452-CDS-H-elongata_contig19853:4374..54801622930121.1386452-CDS-H-elongata_contig19853:4374..5480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19853 4375..5480 -
1691679288.8372805-CDS-H-elongata_contig19853:4374..54801691679288.8372805-CDS-H-elongata_contig19853:4374..5480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19853 4375..5480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19853.5565.1

>prot_H-elongata_contig19853.5565.1 ID=prot_H-elongata_contig19853.5565.1|Name=mRNA_H-elongata_contig19853.5565.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=461bp
MGEGVTLESSQPPCPERSFPSPSSTSQQVGQRENKNNIVNESRGLGASGA
ELLAFPGMSSNGTDAPFDASRRTQMTAEGSDSRKRRNGGHSTLPVGAGSA
FTPPRRTKRRRSDWLLETNMGERAPNGAACSRWDPSPLTSPQQRKRLPVE
IPSIYTTDADRRSTPARDGPSPGGGEDEICVADDWWGLDASNLPRGSKTA
VWPSGGSAVGSQKNATMENVTGENRLDALEESRGLESDDATVRDCHPDGD
DDTMGEFITEKATCRPERVCHTELECDELPEGSEGSGQQYPTKRRGGLGT
MNTGNDAQGIEASQRNDSPDTKSDSSTANNDTEGRELPRNTAPVLAGDAA
LAYDRDVLGGDGLAEYAVGCQVSDPGGTAVSPPQGPTRSRARRLSGSTGL
SNGLRSSRGGENPISEVRQSGQDEVGAGVEAVAVTVTPGELKKARVIGQV
WKGESVFRPV*
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mRNA from alignment at H-elongata_contig19853:3431..5504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19853.5565.1 ID=mRNA_H-elongata_contig19853.5565.1|Name=mRNA_H-elongata_contig19853.5565.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2074bp|location=Sequence derived from alignment at H-elongata_contig19853:3431..5504- (Himanthalia elongata Himel1 dioecious)
CCCCCGAGCCCGCAGTTTGGCTTCATGGGCGAGGGCGTGACTTTGGAGTC
TTCTCAGCCTCCGTGTCCTGAACGGTCGTTTCCTAGTCCATCTTCAACGT
CGCAGCAAGTGGGGCAGCGGGAGAACAAGAACAACATCGTAAACGAAAGC
CGCGGCTTGGGGGCGAGCGGCGCGGAGCTCCTGGCCTTCCCAGGGATGAG
TTCCAACGGGACTGATGCGCCGTTCGACGCCTCACGTAGAACGCAAATGA
CCGCGGAAGGCTCGGATTCACGTAAAAGGAGAAACGGGGGGCATTCGACG
CTACCAGTAGGTGCTGGATCCGCGTTCACCCCTCCCCGCCGAACGAAGCG
GCGACGTTCAGACTGGTTATTAGAGACCAACATGGGCGAAAGGGCCCCGA
ACGGTGCCGCGTGCTCCCGCTGGGATCCCTCGCCATTGACGTCGCCGCAA
CAAAGAAAACGCCTTCCGGTGGAAATCCCAAGTATCTATACCACGGACGC
CGACCGACGATCGACGCCGGCTCGCGATGGGCCTTCTCCTGGCGGAGGCG
AGGACGAGATATGTGTGGCAGATGACTGGTGGGGTCTTGATGCGAGCAAC
CTCCCTCGTGGCAGTAAGACAGCCGTTTGGCCTTCCGGCGGCAGCGCTGT
GGGTTCTCAGAAGAACGCCACGATGGAAAATGTCACCGGAGAAAATCGGT
TAGATGCCTTGGAGGAGAGTCGTGGCTTGGAGAGCGATGATGCTACTGTG
CGAGATTGCCACCCCGACGGCGACGATGACACGATGGGAGAGTTCATAAC
GGAGAAAGCGACCTGTCGGCCAGAGAGGGTCTGTCACACAGAGTTGGAAT
GCGATGAACTGCCGGAGGGTAGCGAAGGGAGCGGTCAGCAGTACCCGACA
AAACGAAGGGGTGGTCTGGGGACAATGAACACAGGGAATGACGCGCAGGG
CATCGAGGCCTCACAGCGCAACGACTCTCCGGACACGAAGAGTGACAGTT
CTACCGCGAACAACGATACCGAGGGTCGAGAACTGCCGAGGAATACCGCT
CCAGTGCTTGCCGGAGATGCCGCGCTCGCGTACGATCGGGATGTCCTGGG
AGGCGATGGGCTGGCGGAATACGCCGTCGGGTGGGTGGAGTCAGGTGGAG
GCGATTTCCACGACGGCGCGAGTGCGGCATGTCTTTCCTTTTTTATGTAT
GTATTTTTAGGGTGCTTTTTGTGCGGTGCGAAGCGTCGCTACCGACCGCA
GCAGTGAAGGGAGATTACATTGCTCGCCCATAATACCCTCTGCGTACGGC
AAGATGTGCACCTGGCTTGCGCTGGTATAAATGTACCCAAAAGCAGTAGT
ATTTCCAAGGAAATTGCAAGCAATATAAATACATGTATATATACATATTT
ATGTCTCTCTAGATATATCATATCATATAGATATATCATGGTGGTTGGCG
CTTTGGTGCTCGTAGGCCTACAACTACCAACGTGGCAGGTAATCTGTCAT
GTCTTAGAGCCGGCTCCCTTTTCAGAGCTCTTTTTCAACCCCTGGATGGC
ACCCCTTTTTCCTTCTGGTCTTCAGCTGCCAAGTTTCAGATCCAGGGGGC
ACCGCGGTCAGCCCCCCTCAGGGTCCCACAAGAAGTCGAGCGCGTCGGCT
CAGCGGAAGCACGGGACTGTCAAACGGCTTGCGGTCTTCGCGCGGGGGGG
AAAATCCAATATCGGAAGTTCGTCAGTCTGGGCAAGATGAGGTAGGCGCC
GGGGTGGAGGCGGTGGCTGTAACTGTCACGCCGGGGGAACTGAAGAAGGC
GCGCGTCATCGGTCAGGTGTGGAAGGGGGAGAGCGTATTCCGGCCTGTAT
AGACAAATGTGGAGGTTGTTTCGTAAGCCACAAAGATTGCATGAAGAGGC
TTGCTCAAACGAAACGAAGAGTACAGGACAGGGCATCAGTATAGCTCCAA
GCAGTATCCCCTCTGTACCGTCCGTCTGCTTCTGCTTCCCAGTACGGCAG
CGGAAATCAAACCGAGCGCTGCTTTTGTGTCACGACGCCGCGTTAGCTGC
TGCTCAGAGCACCAGTGATCCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig19853:3431..5504-

>mRNA_H-elongata_contig19853.5565.1 ID=mRNA_H-elongata_contig19853.5565.1|Name=mRNA_H-elongata_contig19853.5565.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2766bp|location=Sequence derived from alignment at H-elongata_contig19853:3431..5504- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGGCGTGACTTTGGAGTCTTCTCAGCCTCCGTGTCCTGAACG
GTCGTTTCCTAGTCCATCTTCAACGTCGCAGCAAGTGGGGCAGCGGGAGA
ACAAGAACAACATCGTAAACGAAAGCCGCGGCTTGGGGGCGAGCGGCGCG
GAGCTCCTGGCCTTCCCAGGGATGAGTTCCAACGGGACTGATGCGCCGTT
CGACGCCTCACGTAGAACGCAAATGACCGCGGAAGGCTCGGATTCACGTA
AAAGGAGAAACGGGGGGCATTCGACGCTACCAGTAGGTGCTGGATCCGCG
TTCACCCCTCCCCGCCGAACGAAGCGGCGACGTTCAGACTGGTTATTAGA
GACCAACATGGGCGAAAGGGCCCCGAACGGTGCCGCGTGCTCCCGCTGGG
ATCCCTCGCCATTGACGTCGCCGCAACAAAGAAAACGCCTTCCGGTGGAA
ATCCCAAGTATCTATACCACGGACGCCGACCGACGATCGACGCCGGCTCG
CGATGGGCCTTCTCCTGGCGGAGGCGAGGACGAGATATGTGTGGCAGATG
ACTGGTGGGGTCTTGATGCGAGCAACCTCCCTCGTGGCAGTAAGACAGCC
GTTTGGCCTTCCGGCGGCAGCGCTGTGGGTTCTCAGAAGAACGCCACGAT
GGAAAATGTCACCGGAGAAAATCGGTTAGATGCCTTGGAGGAGAGTCGTG
GCTTGGAGAGCGATGATGCTACTGTGCGAGATTGCCACCCCGACGGCGAC
GATGACACGATGGGAGAGTTCATAACGGAGAAAGCGACCTGTCGGCCAGA
GAGGGTCTGTCACACAGAGTTGGAATGCGATGAACTGCCGGAGGGTAGCG
AAGGGAGCGGTCAGCAGTACCCGACAAAACGAAGGGGTGGTCTGGGGACA
ATGAACACAGGGAATGACGCGCAGGGCATCGAGGCCTCACAGCGCAACGA
CTCTCCGGACACGAAGAGTGACAGTTCTACCGCGAACAACGATACCGAGG
GTCGAGAACTGCCGAGGAATACCGCTCCAGTGCTTGCCGGAGATGCCGCG
CTCGCGTACGATCGGGATGTCCTGGGAGGCGATGGGCTGGCGGAATACGC
CGTCGGATGGGCGAGGGCGTGACTTTGGAGTCTTCTCAGCCTCCGTGTCC
TGAACGGTCGTTTCCTAGTCCATCTTCAACGTCGCAGCAAGTGGGGCAGC
GGGAGAACAAGAACAACATCGTAAACGAAAGCCGCGGCTTGGGGGCGAGC
GGCGCGGAGCTCCTGGCCTTCCCAGGGATGAGTTCCAACGGGACTGATGC
GCCGTTCGACGCCTCACGTAGAACGCAAATGACCGCGGAAGGCTCGGATT
CACGTAAAAGGAGAAACGGGGGGCATTCGACGCTACCAGTAGGTGCTGGA
TCCGCGTTCACCCCTCCCCGCCGAACGAAGCGGCGACGTTCAGACTGGTT
ATTAGAGACCAACATGGGCGAAAGGGCCCCGAACGGTGCCGCGTGCTCCC
GCTGGGATCCCTCGCCATTGACGTCGCCGCAACAAAGAAAACGCCTTCCG
GTGGAAATCCCAAGTATCTATACCACGGACGCCGACCGACGATCGACGCC
GGCTCGCGATGGGCCTTCTCCTGGCGGAGGCGAGGACGAGATATGTGTGG
CAGATGACTGGTGGGGTCTTGATGCGAGCAACCTCCCTCGTGGCAGTAAG
ACAGCCGTTTGGCCTTCCGGCGGCAGCGCTGTGGGTTCTCAGAAGAACGC
CACGATGGAAAATGTCACCGGAGAAAATCGGTTAGATGCCTTGGAGGAGA
GTCGTGGCTTGGAGAGCGATGATGCTACTGTGCGAGATTGCCACCCCGAC
GGCGACGATGACACGATGGGAGAGTTCATAACGGAGAAAGCGACCTGTCG
GCCAGAGAGGGTCTGTCACACAGAGTTGGAATGCGATGAACTGCCGGAGG
GTAGCGAAGGGAGCGGTCAGCAGTACCCGACAAAACGAAGGGGTGGTCTG
GGGACAATGAACACAGGGAATGACGCGCAGGGCATCGAGGCCTCACAGCG
CAACGACTCTCCGGACACGAAGAGTGACAGTTCTACCGCGAACAACGATA
CCGAGGGTCGAGAACTGCCGAGGAATACCGCTCCAGTGCTTGCCGGAGAT
GCCGCGCTCGCGTACGATCGGGATGTCCTGGGAGGCGATGGGCTGGCGGA
ATACGCCGTCGGCTGCCAAGTTTCAGATCCAGGGGGCACCGCGGTCAGCC
CCCCTCAGGGTCCCACAAGAAGTCGAGCGCGTCGGCTCAGCGGAAGCACG
GGACTGTCAAACGGCTTGCGGTCTTCGCGCGGGGGGGAAAATCCAATATC
GGAAGTTCGTCAGTCTGGGCAAGATGAGGTAGGCGCCGGGGTGGAGGCGG
TGGCTGTAACTGTCACGCCGGGGGAACTGAAGAAGGCGCGCGTCATCGGT
CAGGTGTGGAAGGGGGAGAGCGTATTCCGGCCTGTATAGCTGCCAAGTTT
CAGATCCAGGGGGCACCGCGGTCAGCCCCCCTCAGGGTCCCACAAGAAGT
CGAGCGCGTCGGCTCAGCGGAAGCACGGGACTGTCAAACGGCTTGCGGTC
TTCGCGCGGGGGGGAAAATCCAATATCGGAAGTTCGTCAGTCTGGGCAAG
ATGAGGTAGGCGCCGGGGTGGAGGCGGTGGCTGTAACTGTCACGCCGGGG
GAACTGAAGAAGGCGCGCGTCATCGGTCAGGTGTGGAAGGGGGAGAGCGT
ATTCCGGCCTGTATAG
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