mRNA_H-elongata_contig19851.5564.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19851.5564.1
Unique NamemRNA_H-elongata_contig19851.5564.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19851.5564.1 vs. uniprot
Match: A0A6H5LG44_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG44_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.330e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:  299 GTDVVHRDSSFVSTDLGDGIVGVRTRSEQRGAMAGIYKVYLSWGTAFLRSELIRKVPDETRLVYPNKETT 508
            G   V RDSSFV+TD GDG++ +RTR E++GA  GI KV LSW  AFLR E IR VP ++R+++PNK+TT
Sbjct:  354 GAGGVRRDSSFVATDFGDGLIELRTRKERQGAPPGIQKVRLSWAVAFLREECIRSVPHKSRVIFPNKDTT 423
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BLAST of mRNA_H-elongata_contig19851.5564.1 vs. uniprot
Match: D7FMT0_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.380e-16
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 2 
Query:  311 VHRDSSFVSTDLGDGIVGVRTRSEQRGAMAGIYKVYLSWGTAFLRSELIRKVPDETRLVYPNKETT 508
            V RDSSFV TD GDG++ +RTR E++GA  G+ KV LSW  A+LR E IR VP +TR+++PNK+TT
Sbjct:  378 VRRDSSFVDTDFGDGLIELRTRKERQGAPPGMQKVRLSWAVAYLREECIRSVPHKTRVIFPNKDTT 443
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19851.5564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LG44_9PHAE1.330e-1658.57ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FMT0_ECTSI4.380e-1659.09ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19851contigH-elongata_contig19851:2954..5860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog2880.D7FMT0
KEGG koko:K08596
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size743
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19851.5564.1prot_H-elongata_contig19851.5564.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19851 4698..5760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.9757264-UTR-H-elongata_contig19851:2953..31231622930120.9757264-UTR-H-elongata_contig19851:2953..3123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19851 2954..3123 +
1691679288.7489562-UTR-H-elongata_contig19851:2953..31231691679288.7489562-UTR-H-elongata_contig19851:2953..3123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19851 2954..3123 +
1622930120.9950156-UTR-H-elongata_contig19851:4605..46701622930120.9950156-UTR-H-elongata_contig19851:4605..4670Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19851 4606..4670 +
1691679288.7627661-UTR-H-elongata_contig19851:4605..46701691679288.7627661-UTR-H-elongata_contig19851:4605..4670Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19851 4606..4670 +
1622930121.0069335-UTR-H-elongata_contig19851:4685..46971622930121.0069335-UTR-H-elongata_contig19851:4685..4697Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19851 4686..4697 +
1691679288.7786329-UTR-H-elongata_contig19851:4685..46971691679288.7786329-UTR-H-elongata_contig19851:4685..4697Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19851 4686..4697 +
1622930121.0494835-UTR-H-elongata_contig19851:5760..58601622930121.0494835-UTR-H-elongata_contig19851:5760..5860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19851 5761..5860 +
1691679288.8073318-UTR-H-elongata_contig19851:5760..58601691679288.8073318-UTR-H-elongata_contig19851:5760..5860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19851 5761..5860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930121.0187263-CDS-H-elongata_contig19851:4697..49001622930121.0187263-CDS-H-elongata_contig19851:4697..4900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19851 4698..4900 +
1691679288.7893507-CDS-H-elongata_contig19851:4697..49001691679288.7893507-CDS-H-elongata_contig19851:4697..4900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19851 4698..4900 +
1622930121.0375419-CDS-H-elongata_contig19851:5567..57601622930121.0375419-CDS-H-elongata_contig19851:5567..5760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19851 5568..5760 +
1691679288.7997468-CDS-H-elongata_contig19851:5567..57601691679288.7997468-CDS-H-elongata_contig19851:5567..5760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19851 5568..5760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19851.5564.1

>prot_H-elongata_contig19851.5564.1 ID=prot_H-elongata_contig19851.5564.1|Name=mRNA_H-elongata_contig19851.5564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MLAPADIVDDDVDVVGVGTDVVHRDSSFVSTDLGDGIVGVRTRSEQRGAM
AGIYKVYLSWGTAFLRSELIRKVPDETRLVYPNKETTVRLLVFMLKVDGE
LASLPKETCQNPTTSPVSLIPSFGDNVDRPI*
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mRNA from alignment at H-elongata_contig19851:2954..5860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19851.5564.1 ID=mRNA_H-elongata_contig19851.5564.1|Name=mRNA_H-elongata_contig19851.5564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2907bp|location=Sequence derived from alignment at H-elongata_contig19851:2954..5860+ (Himanthalia elongata Himel1 dioecious)
CGTAGTCGACGCCTTCGTGAGGAGGAGACCCCCGAGCGCTCGCAACCTGG
CGCGCACAGCGAGAGCCAACGGCCGCTTAGCTCCAGCCTTGAATCTTCCG
CCGCCGACTACCCCGGAGGCGCCTCTGGTAATCGACAGTGACGAGGACGA
CGGCGATGATGACGTCACAGGTACGTGGAAAGGAGTCCTCATAGAGTAAG
GAGTAAGTGTGATATAATGTTATACGTGTGTCAAAGTTATGAAGCTATTG
GAGTGACGCGATTACGCCACTGGTGTGATATTGATGACGTCATCACGAAT
ACGTCGTGGTACAGCGCCATCGGTTCATGAATCGATCAAGAAGGATAGGG
AACTGACTCGATGACGTCATGATTATGGCTCGATGACGTCATCAGGCCAC
AGAGTTCATCACAGAGATGATGTCACAAATTGCGAGGAAGGATGTTACCC
CCGAGAACCGATGGCACGCTTGTTTTTTTTCCGCAATTACGGAGACAGGG
GGCACACGTCAGGGGCATGTGTGTGGAAAGATCTCTAGAGACGAGATCTT
TCCAAGTACATACGTCGTATATCGTATTTATACCGACCTTGTCTTTAGTG
CTGTTTAGAGGCGGAGGGTTCCTTTTCTTCTCCGGGCCGTGTTGCCTTAT
GTATACCATGTATATACTGGTCTAGTTTACAGTATACTTCGGACTGTACT
GTGTAATATACGGGTCTAGTTTACACACTGTATATACATCATACACGCTT
CACCTACCGTATTATACCGTATTATCTATAAAGACAGCTGTTTGCCGCGT
TTGATGCCCAGCTAGATACGACCCCTGTTTCGTTCAGAGAGGAAGTCAGT
CATATATTACCTTGAAGATAGTGTTGACGCGCGGTGACGACTTTCTTTCG
GCGTGCCTCCTCTCGAGGAGTTCGCTCTTTGCATACGATGGTTTTGATCA
CCAGAATCGTCCTAGAGAAATTAACCCCCAATCAAAATGGGGGAAATGTC
TACCCCCCTACCTATTTCACTGCTTGAGATTTATTAATAGTTAGTCTTGA
CCGTTATTCGCGAATAGTCTATATACCGTTATTGGTGAATAGTCTATATA
CCGTTATTGGTGAATAATAGTCTTGACAATTATTGACGAATTGTCTAGAC
CATCATTGTCGAATGATCTAGACCATCACTGGCGAATAGTCTGAACCGTT
ATTGAAGAAATGTTTCCAGCAACTCTTTTTTTATCGGCTTGACCTCAGTA
TTAAGGGGCAGGGCAGGGGAGCGTTTTACTTCGCACGACGCACTTTATTT
CCATACCATAGTTTTTGTGGGCGTGAATAGTGAATAGTCAATAGTCAATC
ATGATTCGTGAGCATGATATCAATAGCGCGTTTTTGTGGAGATTTCTTCA
TTTTATGGCTCTATCGGTAGTATAAACTCTCTTCGTGGTACACTGCACTG
TTGGCGCTTCTGCATGTGGCCAAGAACTGTCGCCGTGTGCATGCCCTGGG
GTGTGTCTCTGTCTATGTCTCTGTAAGTAGTGTGTGCATAGTGCATAGTG
CATAGTAAGGGAGGATTGTACGGTGATGGTGACGAGTCGGCCGACCTCTG
TTCCATACCTAATGCACCCTTGCGTGCGTGTCTATCTGTGTTTGCTTAAC
AGAAGTGCTGGTATCACAGCAGCCGACACCGGATAGGGTTGCCTCACCAG
CGTTAGGCTGCACTGTTGTGCTAAACGCGGAGGGATCGATACCGATGTTG
GCACCCGCAGACATCGTCGATGATGACGTGGACGTTGTGGGCGTGGGGAC
CGACGTTGTCCACAGGGACAGCAGCTTCGTCTCGACGGATCTTGGAGACG
GCATCGTTGGCGTCCGCACCCGGTCGGAACAACGCGGGGCCATGGCAGGA
ATATACAAGGTGTACCTCTCGTGGGGTACGGCTTTCCTGAGGAGCGAGTG
AGTGCGCATGTGTCTCGCCTTTTAATGACAAACTTAATAATGTTACACAG
TACAATAGTTCATTGTACACGTCTCTGTCTTTTTTACTGCAGGAAACAGA
TACGTGGAGTAGGTATGCTAGTTAGCAATTTTGGTTTGAAAATATTAACC
AGCCTATCACTGGCTTGCAGGAAAAGTCGAGGTTTTATCGGTATTTTAAT
ATAGTAGGACAAGTTGACCCTCGACCCTCACGTGGGAGCGCGTGGTAAAT
GCACGTCGAGTGACCTCTACGGGAATTGTTAGGAAAGTATTTGGCGATGT
GTTTTCCCTTGTGTGCGCCATGTATCTCTTGTTAAAAAATATATAGATAC
GTTTGCCTTCCCTGTGAGTCGTGCCTTCCCTGTGAGTCGTGCAGCGCCAA
AAGTACGAATGGAACTAGCTTAGTCGTTACTGTTTTGTACAGCGATTTAT
TTTTTTCAGAACGACTTTTTTGGCAGTGTATTTTTTAAAAGGAGGGGGAG
GGGGGGGGGGTATGTGTTTACGCAGTCTCCTGTCTTCCGCGTGGAAAATT
TTAAAAGGATTTCCCTTTGCGATGCTGCTTTACTTTGATTTCTCGCTGTT
TCCTTGCCTACGCGTTTATGCCCATTTTGGATTTGCGCAACTATCTCCCC
CATGGAAAAAACAGGCTCATCCGAAAAGTGCCAGACGAAACCCGCCTGGT
GTACCCGAACAAAGAAACGACGGTGAGGTTATTGGTGTTCATGTTAAAGG
TTGACGGAGAGCTCGCTTCCCTCCCAAAGGAAACCTGTCAAAATCCCACG
ACCTCTCCTGTATCCCTTATCCCCTCTTTTGGAGACAACGTCGATAGGCC
GATATGAACTCTCTTCTCAATAGCATCAGAGTGAGATATTGCAAAGAGCT
CTCTGAAGAGGTTTACACTCGGTATTCAGGAGAAACGTAGAAGAGGGATT
CCTTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig19851:2954..5860+

>mRNA_H-elongata_contig19851.5564.1 ID=mRNA_H-elongata_contig19851.5564.1|Name=mRNA_H-elongata_contig19851.5564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig19851:2954..5860+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGCACCCGCAGACATCGTCGATGATGACGTGGACGTTGTGGGCGT
GGGGACCGACGTTGTCCACAGGGACAGCAGCTTCGTCTCGACGGATCTTG
GAGACGGCATCGTTGGCGTCCGCACCCGGTCGGAACAACGCGGGGCCATG
GCAGGAATATACAAGGTGTACCTCTCGTGGGGTACGGCTTTCCTGAGGAG
CGAATGTTGGCACCCGCAGACATCGTCGATGATGACGTGGACGTTGTGGG
CGTGGGGACCGACGTTGTCCACAGGGACAGCAGCTTCGTCTCGACGGATC
TTGGAGACGGCATCGTTGGCGTCCGCACCCGGTCGGAACAACGCGGGGCC
ATGGCAGGAATATACAAGGTGTACCTCTCGTGGGGTACGGCTTTCCTGAG
GAGCGAGCTCATCCGAAAAGTGCCAGACGAAACCCGCCTGGTGTACCCGA
ACAAAGAAACGACGGTGAGGTTATTGGTGTTCATGTTAAAGGTTGACGGA
GAGCTCGCTTCCCTCCCAAAGGAAACCTGTCAAAATCCCACGACCTCTCC
TGTATCCCTTATCCCCTCTTTTGGAGACAACGTCGATAGGCCGATATGAG
CTCATCCGAAAAGTGCCAGACGAAACCCGCCTGGTGTACCCGAACAAAGA
AACGACGGTGAGGTTATTGGTGTTCATGTTAAAGGTTGACGGAGAGCTCG
CTTCCCTCCCAAAGGAAACCTGTCAAAATCCCACGACCTCTCCTGTATCC
CTTATCCCCTCTTTTGGAGACAACGTCGATAGGCCGATATGA
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