mRNA_H-elongata_contig198352.5558.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198352.5558.1
Unique NamemRNA_H-elongata_contig198352.5558.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: A0A6H5JSA8_9PHAE (Phosphoacetylglucosamine mutase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.880e-26
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 RKTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEIFIKE 189
            RKTG+AVGL+VTASHN +PDNGIKMVDP+GGMLSQ+WE YAEMLAN PNGKV ++LA+I+ KE
Sbjct:   59 RKTGLAVGLMVTASHNAEPDNGIKMVDPNGGMLSQDWEGYAEMLANTPNGKVSESLAQIYTKE 121
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: D8LQB7_ECTSI (Similar to Phosphoacetylglucosamine mutase (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosa) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB7_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 7.670e-26
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 RKTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEIFIKE 189
            RKTG+AVGL+VTASHN +PDNGIKMVDP+GGMLSQ+WE YAEMLAN PNGKV + LA+I+ KE
Sbjct:  131 RKTGLAVGLMVTASHNAEPDNGIKMVDPNGGMLSQDWEGYAEMLANTPNGKVSEALAQIYTKE 193
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: UPI0009E4C91E (phosphoacetylglucosamine mutase n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4C91E)

HSP 1 Score: 82.4 bits (202), Expect = 7.380e-17
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    4 KTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEIFIKEE 192
            KTG AVGL++TASHNP  DNGIK+ DPDG M++Q+WE +AE LANAP+ ++   L   F+KEE
Sbjct:   54 KTGHAVGLMITASHNPVTDNGIKIADPDGVMMTQDWEPFAEALANAPDPQIFVELVLNFVKEE 116
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: A0A6I9QL83_ELAGV (Phosphoacetylglucosamine mutase n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QL83_ELAGV)

HSP 1 Score: 82.4 bits (202), Expect = 7.390e-17
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    4 KTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEIFIKEE 192
            KTG AVGL++TASHNP  DNG+K+ DPDGGM++Q+WE +A+ LANAPN +    L   F KEE
Sbjct:   61 KTGSAVGLMITASHNPVGDNGVKIADPDGGMMTQQWEPFADALANAPNPEHLLQLVIQFSKEE 123
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: A0A835QFP3_VANPL (Phosphoacetylglucosamine mutase n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QFP3_VANPL)

HSP 1 Score: 82.0 bits (201), Expect = 1.020e-16
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    4 KTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEI---FIKEE 192
            KTG AVGL++TASHNP  DNG+K+ DPDG M++Q WE +AE LANAPN   P++L E+   F KEE
Sbjct:  140 KTGSAVGLMITASHNPIVDNGVKIADPDGSMMTQHWEPFAEALANAPN---PQSLVELVFRFSKEE 202
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: A0A2I0VU22_9ASPA (Phosphoacetylglucosamine mutase n=3 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VU22_9ASPA)

HSP 1 Score: 81.6 bits (200), Expect = 1.380e-16
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    4 KTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEIFIKEE 192
            KTG AVGL++TASHNP  DNGIK+ DPDGGM++Q+WE +A+ LANAP+ +    L   F KEE
Sbjct:   69 KTGYAVGLMITASHNPITDNGIKIADPDGGMMAQDWEPFADALANAPDPQSFVKLVLHFAKEE 131
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: UPI00098E7965 (LOW QUALITY PROTEIN: phosphoacetylglucosamine mutase-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E7965)

HSP 1 Score: 81.3 bits (199), Expect = 1.850e-16
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 KTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEI---FIKEE 192
            KTG  +GL++TASHNP  DNG+K+ DPDGGML+Q+WE +A+ LANAP+   PK L ++   FI+EE
Sbjct:   74 KTGAVIGLMITASHNPVNDNGVKIADPDGGMLTQQWEPFADALANAPD---PKCLLDVVLKFIEEE 136
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: A0A5P1EV04_ASPOF (PGM_PMM_I domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EV04_ASPOF)

HSP 1 Score: 81.3 bits (199), Expect = 1.880e-16
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 KTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEI---FIKEE 192
            KTG  +GL++TASHNP  DNG+K+ DPDGGML+Q+WE +A+ LANAP+   PK L ++   FI+EE
Sbjct:   54 KTGAVIGLMITASHNPVNDNGVKIADPDGGMLTQQWEPFADALANAPD---PKCLLDVVLKFIEEE 116
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: A0A3L6VYM7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VYM7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.060e-16
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 RKTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEIFIKEE 192
            +K     GL+VTASHN  PDNG+K+VDPDGGMLSQ WE YA+ LANAP  KV + L  I   E+
Sbjct:   92 KKEHKITGLMVTASHNAAPDNGVKLVDPDGGMLSQSWEKYAQQLANAPTEKVVEALDSIVRAEK 155
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BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Match: A0A397E811_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E811_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.290e-16
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 RKTGMAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPKTLAEIFIKEE 192
            +K     GL+VTASHN  PDNG+K+VDPDGGMLSQ WE YA+ LANAP  KV + L  I   E+
Sbjct:   92 KKEHKITGLMVTASHNAAPDNGVKLVDPDGGMLSQSWEKYAQQLANAPTEKVVEALDSIVRAEK 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198352.5558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSA8_9PHAE5.880e-2677.78Phosphoacetylglucosamine mutase n=1 Tax=Ectocarpus... [more]
D8LQB7_ECTSI7.670e-2677.78Similar to Phosphoacetylglucosamine mutase (PAGM) ... [more]
UPI0009E4C91E7.380e-1760.32phosphoacetylglucosamine mutase n=1 Tax=Phalaenops... [more]
A0A6I9QL83_ELAGV7.390e-1760.32Phosphoacetylglucosamine mutase n=3 Tax=Arecaceae ... [more]
A0A835QFP3_VANPL1.020e-1660.61Phosphoacetylglucosamine mutase n=2 Tax=Vanilla pl... [more]
A0A2I0VU22_9ASPA1.380e-1660.32Phosphoacetylglucosamine mutase n=3 Tax=Dendrobium... [more]
UPI00098E79651.850e-1657.58LOW QUALITY PROTEIN: phosphoacetylglucosamine muta... [more]
A0A5P1EV04_ASPOF1.880e-1657.58PGM_PMM_I domain-containing protein n=1 Tax=Aspara... [more]
A0A3L6VYM7_9STRA3.060e-1659.38Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397E811_9STRA3.290e-1659.38Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198352contigH-elongata_contig198352:220..858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.7e-19
Seed eggNOG ortholog2880.D8LQB7
Preferred namePGM3
KEGG rclassRC00408
KEGG koko:K01836,ko:K20523
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
GOsGO:0000003,GO:0000271,GO:0001704,GO:0001707,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004610,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006030,GO:0006031,GO:0006037,GO:0006038,GO:0006040,GO:0006041,GO:0006047,GO:0006048,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007283,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009272,GO:0009653,GO:0009790,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010383,GO:0010646,GO:0010647,GO:0016051,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019255,GO:0019438,GO:0019538,GO:0019637,GO:0019953,GO:0022414,GO:0023051,GO:0023056,GO:0030097,GO:0032501,GO:0032502,GO:0032504,GO:0033692,GO:0034221,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0040036,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045743,GO:0046349,GO:0046483,GO:0048232,GO:0048332,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051278,GO:0051704,GO:0055086,GO:0060438,GO:0060541,GO:0065007,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0090287,GO:1901071,GO:1901073,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphoacetylglucosamine mutase activity
EggNOG OGsCOG1109@1,KOG2537@2759
EC5.4.2.3
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198352.5558.1prot_H-elongata_contig198352.5558.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198352 220..846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.5413225-CDS-H-elongata_contig198352:219..2851622930120.5413225-CDS-H-elongata_contig198352:219..285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198352 220..285 -
1691679288.5577507-CDS-H-elongata_contig198352:219..2851691679288.5577507-CDS-H-elongata_contig198352:219..285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198352 220..285 -
1622930120.559351-CDS-H-elongata_contig198352:732..8461622930120.559351-CDS-H-elongata_contig198352:732..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198352 733..846 -
1691679288.5700126-CDS-H-elongata_contig198352:732..8461691679288.5700126-CDS-H-elongata_contig198352:732..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198352 733..846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930120.5798817-UTR-H-elongata_contig198352:846..8581622930120.5798817-UTR-H-elongata_contig198352:846..858Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198352 847..858 -
1691679288.579177-UTR-H-elongata_contig198352:846..8581691679288.579177-UTR-H-elongata_contig198352:846..858Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198352 847..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198352.5558.1

>prot_H-elongata_contig198352.5558.1 ID=prot_H-elongata_contig198352.5558.1|Name=mRNA_H-elongata_contig198352.5558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MAVGLVVTASHNPDPDNGIKMVDPDGGMLSQEWEVYAEMLANAPNGKVPK
TLAEIFIKEE
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mRNA from alignment at H-elongata_contig198352:220..858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198352.5558.1 ID=mRNA_H-elongata_contig198352.5558.1|Name=mRNA_H-elongata_contig198352.5558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=639bp|location=Sequence derived from alignment at H-elongata_contig198352:220..858- (Himanthalia elongata Himel1 dioecious)
AGAAAGACTGGTATGGCGGTGGGGCTCGTGGTGACCGCTTCTCACAACCC
CGATCCCGACAATGGGATCAAGATGGTTGATCCCGACGGTGGCATGCTGT
CTCAAGAATGGGAGGTGTACGCGGAGGTGAGAAAATAGAGTGGCTCGAGG
CGAAAGAAAGTGTTCCATTTGAAAAAAGGTCCGGAAAGAAAAAAAAGTAA
AAACGACTTCGGATTTGATGCCCATCGAGGAGAGGGGAGAGGGGCACAGT
TGCAGTCACTCCATCGTGAAGTAGCAAACTGTACGCATATATTACTTACG
GCAGAGCTGGTCGCACGCCAAGCCGCAAGCCAATTTAATGTGTGGCCATG
TTTTGCGATAGCGCTTACTTTGTTATTGTCGACAGTAGGGGTTTTTGTGA
CGCGATACCCTATACACGCGTTGCTTGTTAAAATGTCGAGGCTCAAACAT
AATTTATAAAAGGTTCCGCCCCTGGCATTACTCCCACCCTTCCCCCCACC
CCCTTTATCTTCCTTCCCCCCACCCCGCGTTGACGACATGTGCCGACAAC
AACATCATTTTCCTGGGGGGAAGATGCTGGCTAACGCTCCCAACGGCAAG
GTCCCGAAGACGCTTGCCGAGATATTCATCAAAGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig198352:220..858-

>mRNA_H-elongata_contig198352.5558.1 ID=mRNA_H-elongata_contig198352.5558.1|Name=mRNA_H-elongata_contig198352.5558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig198352:220..858- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGGGGCTCGTGGTGACCGCTTCTCACAACCCCGATCCCGACAA
TGGGATCAAGATGGTTGATCCCGACGGTGGCATGCTGTCTCAAGAATGGG
AGGTGTACGCGGAGATGGCGGTGGGGCTCGTGGTGACCGCTTCTCACAAC
CCCGATCCCGACAATGGGATCAAGATGGTTGATCCCGACGGTGGCATGCT
GTCTCAAGAATGGGAGGTGTACGCGGAGATGCTGGCTAACGCTCCCAACG
GCAAGGTCCCGAAGACGCTTGCCGAGATATTCATCAAAGAGGAGATGCTG
GCTAACGCTCCCAACGGCAAGGTCCCGAAGACGCTTGCCGAGATATTCAT
CAAAGAGGAG
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