mRNA_H-elongata_contig1981.5543.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1981.5543.1
Unique NamemRNA_H-elongata_contig1981.5543.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: A0A6H5LHK3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHK3_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 6.420e-81
Identity = 151/269 (56.13%), Postives = 193/269 (71.75%), Query Frame = 2
Query:  380 KVID-ITLPKEAVSEVLETFDAELLALTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTSQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNE----------------------------VFAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL 1099
            KV D + + KE ++EVL+TFDAELLAL+RL+TP+IV+ YGASV+ + +I++VSEFVEGG LR LL+N  KLK L  R+RL IA+D A GM+SLYAHGMQHRHLSS +ILLTS+ +AK+ G GL+MT+++I  F+   G E  + +++K+L WASREVLAGAGFSEKSDVYSFGIVLWEIMQ D S+PY  + P++                            V  AKYNG+GP IP + P  IS LM+SCWSNLPA+RPSF+K+   L
Sbjct:  184 KVFDTLGMSKEEMTEVLDTFDAELLALSRLSTPHIVQAYGASVSPA-EIILVSEFVEGGVLRRLLHNPLKLKDLTQRVRLGIAKDTALGMRSLYAHGMQHRHLSSNSILLTSDYRAKILGVGLTMTTELIDFFT---GDERAEKQAEKELPWASREVLAGAGFSEKSDVYSFGIVLWEIMQKDPSLPYANLSPSQHPLKSLNPFYTVRTKSMNPSFIVTANQQVVGAKYNGEGPSIPEDCPVAISRLMKSCWSNLPADRPSFDKVVDTL 448          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: D7FPQ4_ECTSI (Zn binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ4_ECTSI)

HSP 1 Score: 292 bits (748), Expect = 6.530e-79
Identity = 149/241 (61.83%), Postives = 194/241 (80.50%), Query Frame = 2
Query:  380 KVID-ITLPKEAVSEVLETFDAELLALTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTSQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEVFAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL 1099
            KV D + + KE ++EVL+TFDAELLAL+RL+TP+IV+ YGASV+ + +I++VSEFVEGG LR LL+N  KLK L  R+RL IA+D+A GM+SLYAHGMQHRHLSS +ILLTS+ +AK+ G GL+MT+++I  F+   G +  +++++K+L WASREVLAGAGFSEKSDVYSFGIV WEIMQ D S+PY  + P++V  AKYNG+GP IP + P  IS LM+SCWSNLPA+RPSF+K+   L
Sbjct: 1195 KVFDTLGMSKEEMTEVLDTFDAELLALSRLSTPHIVQAYGASVSPA-EIIMVSEFVEGGVLRRLLHNPLKLKDLTQRVRLGIAKDIALGMRSLYAHGMQHRHLSSDSILLTSDYRAKILGVGLTMTTELIDFFT---GDKRAEEQAEKELPWASREVLAGAGFSEKSDVYSFGIVFWEIMQKDPSLPYANLLPSQVVGAKYNGEGPSIPEDCPVAISRLMKSCWSNLPADRPSFDKVVDAL 1431          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: G5A021_PHYSP (Protein kinase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A021_PHYSP)

HSP 1 Score: 132 bits (333), Expect = 1.100e-30
Identity = 86/252 (34.13%), Postives = 128/252 (50.79%), Query Frame = 2
Query:  368 VLDEKVIDITLPKEAVS-------EVLETFDAELLALTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTSQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEV-FAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL 1099
            V+  KV+D++   ++ S       E+L  F  E    + L  PNIV+  G S +A  +  +V EF+EGGTL ++L   RK      R+    A D+A GM  L+ H + HR L S  +LL +   AK+  FGLS   ++        G  +          W + EV+    +S K+DVYSF +VLWE++  D  +P++G  P +   A       P +PR TPP+I+ L+E CW+  P  RP F  I +VL
Sbjct:   22 VVAAKVVDLSAAAKSKSGGDALAKELLREFRREEEVASALRHPNIVQFLG-SASAPPRYCLVFEFMEGGTLAEVLRRNRKAPLDFFRL----ASDMAQGMSYLHEHSVMHRDLKSSNVLLDAQGTAKISDFGLSCVMEL--------GRSADLTAETGTYGWMAPEVIRHEPYSSKADVYSFAVVLWELLAKD--VPFKGQTPMQTAMAVAEQRMRPALPRQTPPKIAELIEHCWNQDPTRRPDFSSILKVL 258          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: F0ZJE1_DICPU (Protein kinase domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZJE1_DICPU)

HSP 1 Score: 131 bits (330), Expect = 1.520e-29
Identity = 81/226 (35.84%), Postives = 121/226 (53.54%), Query Frame = 2
Query:  428 ETFDAELLALTRLNT--PNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTSQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEVFAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL 1099
            E FD E+  ++ +++  PN  + YGA+      + +VSE+V+GG+LRDLL N  K K L    +L+IA D+A  M+ L++ G+ HR L S  +L+T +  AKV  FG S    +    ++  G  S          W   E+     ++E  DVY+FGIVLWEI       PYEG+    +      G+ P +P + P E S LM++CW++ P  RP F+ I Q L
Sbjct:  130 EEFDREITIMSLIDSDHPNFTRFYGANKQNPKYLFMVSEYVQGGSLRDLLLN--KDKPLTYFTQLSIALDIANAMQYLHSIGVIHRDLKSLNVLITDDYSAKVIDFGTSRAIDVSKQMTLNLGTSS----------WMGPELFRNEPYTELCDVYAFGIVLWEIFCRKE--PYEGVNSWSIPLMVAKGERPPVPSDCPSEYSKLMKACWADKPKKRPKFKDIHQTL 341          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: D3BQC1_POLPP (Protein kinase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BQC1_POLPP)

HSP 1 Score: 135 bits (340), Expect = 3.580e-29
Identity = 81/237 (34.18%), Postives = 132/237 (55.70%), Query Frame = 2
Query:  392 ITLPKEAVSEVLETFDAELLALTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTSQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEV-FAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL 1099
            I + ++  ++VL+ F  EL  L++L  PNIV +  A  T    +  V+EF+ GG+L D+L++ +   ++    +LAI   +A GM  L+   + HR + S  +LL  N+  K+  FGLS      +  +   G  SP        +W + E+L G  ++EK DVY+FGI+LWE+    G +PY G++  ++  A    G  P IP + PP++  L++SCW++ P+ RPSF +I Q L
Sbjct:  414 IKINEDVTNQVLDEFRKELTILSKLRHPNIVLLMAAC-THPPNLCFVTEFLNGGSLYDILHSKKIRMNMPLYKKLAI--QIAQGMNYLHLSNVIHRDIKSLNLLLDDNMNVKICDFGLSRLKTKSTAMTKSIG--SP--------IWMAPELLIGEDYTEKVDVYAFGIILWEL--GTGELPYSGLDSVQLALAVSTKGLRPTIPTSWPPQLHQLIQSCWNHEPSLRPSFTQILQQL 635          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: UPI000644CD08 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644CD08)

HSP 1 Score: 135 bits (339), Expect = 9.410e-29
Identity = 80/237 (33.76%), Postives = 131/237 (55.27%), Query Frame = 2
Query:  392 ITLPKEAVSEVLETFDAELLALTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTSQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEV-FAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL 1099
            I + ++  ++VL+ F  EL  L++L  PNIV +  A  T    +  V+EF+ GG+L D+L++ +   ++    +LAI   +A GM  L+  G+ HR + S  +LL  N+  K+  FGLS      +  +   G  SP        +W + E+L G  ++EK DVY+FGI+LWE+    G +PY G++  ++  A    G  P IP   P  ++ L++SCW++ P+ RPSF +I  +L
Sbjct:  543 IKINEDVTTQVLDEFRKELTILSKLRHPNIVLLMAAC-TVPPNLCFVTEFLNGGSLYDILHSKKIRMNMPLYKKLAI--QIAQGMNYLHLSGVIHRDIKSLNLLLDDNMNVKICDFGLSRLKSKSTAMTKSIG--SP--------IWMAPELLVGDDYTEKVDVYAFGIILWEL--GTGELPYSGLDSVQLALAVSTKGLRPTIPSAWPSMLNQLIQSCWNHEPSQRPSFTQILSIL 764          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: A0A6B2LF92_9EUKA (Protein kinase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LF92_9EUKA)

HSP 1 Score: 120 bits (301), Expect = 9.430e-27
Identity = 78/216 (36.11%), Postives = 119/216 (55.09%), Query Frame = 2
Query:  455 LTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMT----SQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAG-FSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEVFAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKI 1087
            ++ L  PN++   G  +  + KI+V+ E++E G+L DLL   RK      +M   IA+++A GM  L+  G+ HR L+SK ILL+S++QAKV  FGLS      SQ +S F++              + W + EV+  A  F+  SDVYS+GI+LWE+   +   P +    +       +G  P IP    P+  +L+E+CW  LP +RPSFE+I
Sbjct:    1 MSSLRHPNVILYMGVCIDTNFKIIVM-EYMEKGSLNDLL---RKEPFTLGKM-FKIAKEIALGMNYLHGEGILHRDLTSKNILLSSHMQAKVADFGLSKIKLAESQNVS-FTMGS------------IAWMAPEVIENASNFTRASDVYSYGIILWEMCTGEDPCPRDIQPVHFAKLVLESGYRPEIPPTVSPKWKALIETCWDTLPKSRPSFEQI 198          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: A0A8J4PTI7_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PTI7_9MYCE)

HSP 1 Score: 128 bits (322), Expect = 2.050e-26
Identity = 72/225 (32.00%), Postives = 124/225 (55.11%), Query Frame = 2
Query:  425 LETFDAELLALTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTSQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEVFAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL 1099
            ++ F+ E+  +T L+   I ++YGA+      + +VSEFV+GG++RDLL   +++   + ++ +AI  D+   MK L++ G+ HR L S  +L+T +L+AK+ G G+     +    ++  G             W + EV+ G  ++E  DVYSFGI+LWE+     S PY G+    +      G+ P+IP + P + S L++SCW++    RP+F +I   L
Sbjct:  951 IDEFNREVTIMTLLDHECITRLYGANKEDPNNVFLVSEFVKGGSMRDLLLLNKQVLFYYQKISIAI--DIVNAMKYLHSLGVFHRDLKSGNVLITQDLRAKLIGVGIFRDPDLYKKLTLDPG-----------TSWTAPEVIKGQQYTESCDVYSFGIILWELYCR--SEPYPGVTSWTIPVIVCEGKRPKIPSDCPSDYSKLIKSCWADKAKKRPTFNEIHSTL 1160          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: A0A6B2L3S5_9EUKA (Protein kinase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L3S5_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 1.520e-25
Identity = 82/227 (36.12%), Postives = 116/227 (51.10%), Query Frame = 2
Query:  425 LETFDAELLALTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTSQMISH-FSVKDGYESPKDKSDKDLLWASREVLAGAG-FSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEVFAAKYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL 1099
            +E FD E+  L+ L  PN++   G  +    KI+V+ E++E G+L +LL    K K L +     IA ++A GM  L+   + HR L+SK ILL+ +++AKV  FGLS      SH +S   G           + W + EV+A A  FS+ SDVYS+GI+LWEI       P E    N      +    P IP     +   L+ SCW + P  RPSF+KI   L
Sbjct:  126 IELFDQEVSILSSLRHPNVILYMGVCLDKD-KIIVM-EYMENGSLSELL----KKKELRSHQIHKIATEIALGMNYLHGENILHRDLTSKNILLSKHMEAKVADFGLSKVKLAESHTYSYTMG----------SIAWMAPEVIANASKFSKSSDVYSYGIILWEIWTGCDPCPKEIAIVNLANKVLHEQYRPTIPPTVHAKWQDLIRSCWESDPDQRPSFDKILGTL 336          
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Match: A0A251RJM1_PRUPE (Protein kinase domain-containing protein n=15 Tax=Prunus TaxID=3754 RepID=A0A251RJM1_PRUPE)

HSP 1 Score: 125 bits (313), Expect = 1.940e-25
Identity = 90/246 (36.59%), Postives = 130/246 (52.85%), Query Frame = 2
Query:  425 LETFDAELLALTRLNTPNIVKVYGASVTASVKIVVVSEFVEGGTLRDLLNNTRKLKHLHTRMRLAIARDVAAGMKSLYAHG--MQHRHLSSKTILLTSNLQAKVFGFGLSM--TSQMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLWEIMQADGSIPYEGMEPNEVFAA-KYNGQGPRIPRNTPPEISSLMESCWSNLPANRPSFEKICQVL-----SPSTGLPQGGQ 1132
            L+ F  E+  + R+  PN+V   GA VT    + +V+E++  G+L  L++     + L  R RL +A DVA G+  L+     + H  L S  +L+  N  AKV  FGLS    +  IS  SV    E           W + E L G   +EKSDVYSFG++LWE++  +   P+ G+ P +V  A  +  +   IP NTPP ++SLMESCW++ PA RPSF  I + L     SP   +P GG+
Sbjct:  723 LKEFLREVAIMKRVRHPNVVLFMGA-VTKRPHLSIVTEYLPRGSLYRLIHRPASGELLDQRRRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTAKVCDFGLSRFKANTFISSKSVAGTPE-----------WMAPEFLRGEPSNEKSDVYSFGVILWELVTMEQ--PWSGLSPAQVVGAVAFQNRRLAIPANTPPMLASLMESCWADDPAQRPSFASIVESLKRLLKSPLQLVPVGGK 954          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1981.5543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LHK3_9PHAE6.420e-8156.13Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FPQ4_ECTSI6.530e-7961.83Zn binding domain-containing protein n=1 Tax=Ectoc... [more]
G5A021_PHYSP1.100e-3034.13Protein kinase domain-containing protein n=1 Tax=P... [more]
F0ZJE1_DICPU1.520e-2935.84Protein kinase domain-containing protein n=1 Tax=D... [more]
D3BQC1_POLPP3.580e-2934.18Protein kinase n=1 Tax=Polysphondylium pallidum (s... [more]
UPI000644CD089.410e-2933.76hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6B2LF92_9EUKA9.430e-2736.11Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A8J4PTI7_9MYCE2.050e-2632.00Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A6B2L3S5_9EUKA1.520e-2536.12Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A251RJM1_PRUPE1.940e-2536.59Protein kinase domain-containing protein n=15 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1981contigH-elongata_contig1981:2566..6578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue1.5e-53
Seed eggNOG ortholog2880.D7FPQ4
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size2957
Cds size597
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.3830447-UTR-H-elongata_contig1981:2565..43181622930119.3830447-UTR-H-elongata_contig1981:2565..4318Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1981 2566..4318 -
1691679288.1591692-UTR-H-elongata_contig1981:2565..43181691679288.1591692-UTR-H-elongata_contig1981:2565..4318Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1981 2566..4318 -
1622930119.4287424-UTR-H-elongata_contig1981:5357..53581622930119.4287424-UTR-H-elongata_contig1981:5357..5358Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1981 5358..5358 -
1691679288.203169-UTR-H-elongata_contig1981:5357..53581691679288.203169-UTR-H-elongata_contig1981:5357..5358Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1981 5358..5358 -
1622930119.444307-UTR-H-elongata_contig1981:5649..57681622930119.444307-UTR-H-elongata_contig1981:5649..5768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1981 5650..5768 -
1691679288.214831-UTR-H-elongata_contig1981:5649..57681691679288.214831-UTR-H-elongata_contig1981:5649..5768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1981 5650..5768 -
1622930119.4561346-UTR-H-elongata_contig1981:6091..65781622930119.4561346-UTR-H-elongata_contig1981:6091..6578Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1981 6092..6578 -
1691679288.2232091-UTR-H-elongata_contig1981:6091..65781691679288.2232091-UTR-H-elongata_contig1981:6091..6578Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1981 6092..6578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.3938105-CDS-H-elongata_contig1981:4318..45611622930119.3938105-CDS-H-elongata_contig1981:4318..4561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1981 4319..4561 -
1691679288.1771414-CDS-H-elongata_contig1981:4318..45611691679288.1771414-CDS-H-elongata_contig1981:4318..4561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1981 4319..4561 -
1622930119.4043434-CDS-H-elongata_contig1981:4819..50531622930119.4043434-CDS-H-elongata_contig1981:4819..5053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1981 4820..5053 -
1691679288.185344-CDS-H-elongata_contig1981:4819..50531691679288.185344-CDS-H-elongata_contig1981:4819..5053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1981 4820..5053 -
1622930119.4148924-CDS-H-elongata_contig1981:5237..53571622930119.4148924-CDS-H-elongata_contig1981:5237..5357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1981 5238..5357 -
1691679288.1940596-CDS-H-elongata_contig1981:5237..53571691679288.1940596-CDS-H-elongata_contig1981:5237..5357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1981 5238..5357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1981.5543.1prot_H-elongata_contig1981.5543.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1981 4319..5357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1981.5543.1

>prot_H-elongata_contig1981.5543.1 ID=prot_H-elongata_contig1981.5543.1|Name=mRNA_H-elongata_contig1981.5543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MRLAIARDVAAGMKSLYAHGMQHRHLSSKTILLTSNLQAKVFGFGLSMTS
QMISHFSVKDGYESPKDKSDKDLLWASREVLAGAGFSEKSDVYSFGIVLW
EIMQADGSIPYEGMEPNEVFAAKYNGQGPRIPRNTPPEISSLMESCWSNL
PANRPSFEKICQVLSPSTGLPQGGQGGDDQEDSDPYACGPFDGEMSVP*
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mRNA from alignment at H-elongata_contig1981:2566..6578-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1981.5543.1 ID=mRNA_H-elongata_contig1981.5543.1|Name=mRNA_H-elongata_contig1981.5543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4013bp|location=Sequence derived from alignment at H-elongata_contig1981:2566..6578- (Himanthalia elongata Himel1 dioecious)
AATGCGTGCTGCTAAGGTGAACGAACCATTAGAATCGTGCAGTATAAAAA TTAATTGCCCACGAAAATAAAATCAAGTACCGTGCAGTATTATACTGTAC CAGTATGAAGTACCTTGCGGGGAGGGAAGGAGGGCCAAGGAACGCCACCA CCCTAACGAACGTAGTATACTGTGTACAGTACAGTACCAATTATCGTATT TGTTATAATAGTTTATTAGATTAGAAGAGAAAAGAACTTGAGTTAATTAA TCTGCTCTTAGCCATCAGCCATCAACCATCAGCTGTCAATCGGTTGATTC AGTGTAGGATCACTTTTCTACATCGAATCGAATATAGCTTGATGATCGAC ATGAGCGGTTACCGTGTGTGTTGGATGAAAAGGTGATCGACATTACTTTG CCAAAGGAGGCTGTGTCGGAGGTGCTCGAGACCTTCGACGCTGAGTTGCT GGCCCTTACCCGACTCAACACCCCCAACATTGTCAAGGTAATTAAGAAAG TCTAAGTCTCGTGCACAAAGTTTTATCAATGTTCGATGTCTTTAAAAGGT GTTGGCCGCTCGTGGGCATGGTCATGTTTGCACTTATCGATACCGTTATT GTTACCGTTTATGTTTATGTACTACAGGTAGATTAGATATACAGAAACAG GAAATTCCGATCGTAGAGCCCTAGCATGTGATATCATGTGTCGAGATGTA ATCGTCCGACGGAGTATGACGGTATAATGTATAAAGTACATAACTGTTAC TTACATCTACTAATAATAACCGTACTAATTGGAAACCTAATATTTTAATA CTTACATCAGGTGTATGGAGCGTCCGTGACTGCTAGTGTCAAAATTGTCG TTGTGTCGGAGTTCGTCGAGGGAGGCACGCTTCGTGATCTACTAAACAAC ACCCGCAAGCTGAAGCATCTGCACACGAGGTACCGATTATAATAATTAAA TACTGCTGATGGTCATAGTAATAGTAGTAATAATGTGATGGGTATGGCAA TAACAACACAACCCCTAAACCATATCATGCCATCATGCTTGAAAAGTCGT AGTCTATGTTTATATAGACTAGGCGATGTAATTAATATTTTGACTGCGTT GCTGACCTGCTTGCCGAATCGAATCGGAACAGTTTCGTCCATAACGTCCT GTTTTCTTGTCTTCCATTGACATGGAGACGTTGGCAATATTTCATGAAAT TTCGATTCCATTGTATGCAGAATGCGGCTGGCCATCGCTCGAGACGTGGC GGCCGGCATGAAGAGCCTCTACGCGCACGGCATGCAGCATCGACACCTCT CGTCAAAAACTATCCTCTTAACCAGTAATCTACAGGCAAAGGTAACATTT TGCTATGTTATACGGAGTAATCTTCAATATGTTAATATAGGGACACCAAC ATGTTGAATATAATGCTCATATAATATATATATATATAGTGGAGTGCATT ACATGTCACTTAAATATTTCCATCTAGGGTATATATTAGAGATAGCGAAA CCTTTTACTGTTTTATCTTTTGCAGGTATTCGGGTTCGGGCTGTCGATGA CATCCCAGATGATATCCCATTTCAGTGTCAAGGACGGGTACGAGTCGCCC AAGGACAAATCCGACAAGGATCTCCTATGGGCATCGAGAGAGGTTCTGGC CGGGGCGGGTTTCAGCGAGAAGAGCGATGTTTACAGCTTCGGCATCGTCT TGTGGGAAATCATGCAGGCAGATGGATCTATTCCCTATGAAGGCATGGAG CCGAACGAGGTACGATGCTCGAAGTTGTTGAAGTTGATTGAGACCAAGAT ATGTTGAGGCATCATACCTCATCATACCTCTAGCATGTGTAGCTTGATCA CTTCAATAACGACTCCCATGAGTCTCGACCTTTTTTGTACACTACAGTAT CTTCCTAACGCATATCTATATCTATATCTATCTATGATATCCCCAGGGTG CCTCGGCCCTCTTGTTGGTGAAGTCTGCATGTTATATCTAGATGTCCGTC TTTCTGTCTGTGTAAAGGTATTCGCCGCCAAGTACAACGGACAGGGACCT CGGATCCCTCGCAACACTCCCCCAGAGATCAGCAGTCTAATGGAAAGCTG CTGGAGCAACCTGCCCGCGAATAGACCCTCGTTTGAAAAGATATGCCAAG TGCTTTCGCCATCGACCGGACTACCCCAAGGGGGGCAGGGGGGTGATGAC CAAGAAGACAGCGATCCCTACGCGTGTGGCCCCTTCGACGGAGAGATGTC CGTGCCTTGAGCGCTTGAAGCTTTGACATACCCCCATCTATCTCGAGAAA TTGAGAATCTACATACATTGTTTCAAACGGTTAAAGCACAAATGATTGAA ATGGCAAAACAGTCACCCTCACCGGAAGTGTCTGAACTGCTATACTGCTA TACTGTTATATTGTCCGATTCCAGTAAAGAAGCTTTTCTGTTAATGGTAT CATGATGATGCCTTTGCATTCGGGTATTGATTTGTCGTACGAAGTTGAGT ACCGGGTAGAACTGTATATGTGTCACGCATATATTTTTAGTGTATCTTTG ACTATCCAAGAAAGTGTACCCTCGCGAGGCTGCAGTGTAATCAAGAGAAC AGATGTGCTGATTAAGGCAACCATATCAAGTTCATCAAGTTGAACAAGGC TCGGTGTTTTTCTTCCTGATTATATCGATATCGCTTGACATTCTCTTTGC CTTTGTCGTGTCATTTCTCTATTCGATGATGACATGAAGTTATTCTTAAG GGAGTTGGTGGATATTTTTGGATGAAACCATGGTCGTAATTATCTTTGTT TCGGTCCTAACTTGGGGAGTTTTATTATTATTTCTTGTTTGTTTTTCCCT TATTTTCCCCCTTTGCCAACGATATTGGTTCTATATTAGTGGAAAGTAAA ACTTCAACCTCATACTGTGTCATCCAAAGGTGTAATGCGATCAGCTTTCC AAAGGGGGCAGCATATTACACGTGGGTGGCACACTACATAACTTTGTCGC TTTTGATTATAACATCGGACAGAACTGTTGTATTGGGAATATCGGCTGGT GGAGAGGCGCGACGGGACTGTTACATTGACAAAAGCAGTCAAGACGAACA GAGGATGGCAGACTTGGCTCTACGGTGCTACATTTTGTGTTAAATTACAT GACAGACTACGAGGTACCAACACACGTTTTACCGTTGTATAAAATAATAG TATTACCTTGTCGTTCGATTCCAATGATTTCACGAGGAATTTTTATTCTC GGTTAGTTTGACGTCGTTGTTGTCCATTGATGATTGTTTGTTTTGATTGT TGATTTGCGGTAGTAGGTAAGGTCCAGCAATATGTCAGGTTCATGGCAAT GAAATAAAATCATTGAAGAAATCACAAGTTTTGAACGTTTGTGGTCATGA TTATCACTATCATATCATATCATAAAGCAAAGTTGGAACAACCGGGTTCA CTTTTTCTGCATCGGAGTTTTTGTTGTTACACCAAAGTACTCCATCCTTG AAAAGAAAAAGCCGCCACATCCCACGTTTTTATTCTGTATTGTATTGTGG GGTCGTCACATATACTGTATTATATACCACTCTGAGCGACAATGTAAGCA CCGTGTCAGCGACACTCGAGCTCTTGTAGAACTATGAAAATGTATGGACA TAATACTTGTATTGTTTCGGGGTGAAGGGGAGTAGTTTATTTTTTATCAG GGTGACCAGGGACATCAGGATACCTTCCTTCCCCGATTTCCACCAGTAGA TACTTCGTACGGTTCATGCGGTACTGTCAGGTATATTTCCCGGGGTAACC AGGGGACATCCAATATAATCCACGGGTTTCAAACACGAGATATGGTAGTA GGGGACCAGCAAGATAAGGCAAATTCATATATAAATGTCTTCGACATCGT ATGGTACCGTCGTAGCCACTAACCCCTACCGCGCGCACCCAGTCCCCATG TAAGCCCTCATACTATGACAAGCCTACAACAGCTGTCCAGTTCCACCCCC ATGTATTCCTACT
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Coding sequence (CDS) from alignment at H-elongata_contig1981:2566..6578-

>mRNA_H-elongata_contig1981.5543.1 ID=mRNA_H-elongata_contig1981.5543.1|Name=mRNA_H-elongata_contig1981.5543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig1981:2566..6578- (Himanthalia elongata Himel1 dioecious)
ATGCGGCTGGCCATCGCTCGAGACGTGGCGGCCGGCATGAAGAGCCTCTA
CGCGCACGGCATGCAGCATCGACACCTCTCGTCAAAAACTATCCTCTTAA
CCAGTAATCTACAGGCAAAGATGCGGCTGGCCATCGCTCGAGACGTGGCG
GCCGGCATGAAGAGCCTCTACGCGCACGGCATGCAGCATCGACACCTCTC
GTCAAAAACTATCCTCTTAACCAGTAATCTACAGGCAAAGGTATTCGGGT
TCGGGCTGTCGATGACATCCCAGATGATATCCCATTTCAGTGTCAAGGAC
GGGTACGAGTCGCCCAAGGACAAATCCGACAAGGATCTCCTATGGGCATC
GAGAGAGGTTCTGGCCGGGGCGGGTTTCAGCGAGAAGAGCGATGTTTACA
GCTTCGGCATCGTCTTGTGGGAAATCATGCAGGCAGATGGATCTATTCCC
TATGAAGGCATGGAGCCGAACGAGGTATTCGGGTTCGGGCTGTCGATGAC
ATCCCAGATGATATCCCATTTCAGTGTCAAGGACGGGTACGAGTCGCCCA
AGGACAAATCCGACAAGGATCTCCTATGGGCATCGAGAGAGGTTCTGGCC
GGGGCGGGTTTCAGCGAGAAGAGCGATGTTTACAGCTTCGGCATCGTCTT
GTGGGAAATCATGCAGGCAGATGGATCTATTCCCTATGAAGGCATGGAGC
CGAACGAGGTATTCGCCGCCAAGTACAACGGACAGGGACCTCGGATCCCT
CGCAACACTCCCCCAGAGATCAGCAGTCTAATGGAAAGCTGCTGGAGCAA
CCTGCCCGCGAATAGACCCTCGTTTGAAAAGATATGCCAAGTGCTTTCGC
CATCGACCGGACTACCCCAAGGGGGGCAGGGGGGTGATGACCAAGAAGAC
AGCGATCCCTACGCGTGTGGCCCCTTCGACGGAGAGATGTCCGTGCCTTG
AGTATTCGCCGCCAAGTACAACGGACAGGGACCTCGGATCCCTCGCAACA
CTCCCCCAGAGATCAGCAGTCTAATGGAAAGCTGCTGGAGCAACCTGCCC
GCGAATAGACCCTCGTTTGAAAAGATATGCCAAGTGCTTTCGCCATCGAC
CGGACTACCCCAAGGGGGGCAGGGGGGTGATGACCAAGAAGACAGCGATC
CCTACGCGTGTGGCCCCTTCGACGGAGAGATGTCCGTGCCTTGA
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