mRNA_H-elongata_contig197959.5537.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197959.5537.1
Unique NamemRNA_H-elongata_contig197959.5537.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: D7G0V2_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0V2_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 8.310e-83
Identity = 119/140 (85.00%), Postives = 130/140 (92.86%), Query Frame = 1
Query:    1 QTNTTTILKEYYPGMKRLMYGIVGGNYEPDKHSSPLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHIL 420
            QTNTTTILKEYYPGM RLMYG+VGGNYE DKH+S LQAAACELEEEAHLHEGTW+ LMK E  VAGAGKYSTQ+F+ YLVVDP+VKG P+GLDDGEFIEY+RGVSLEEVRAMI+SGDMSV SGFAALMAI+KLRELGHI+
Sbjct:  128 QTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFYSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGHIM 267          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: D7G6B3_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6B3_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.470e-43
Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 1
Query:    1 QTNTTTILKEYYPGMKRLMYGIVGGNYEPDKHSSPLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELG 411
            QTNT T++KE+ PG + + +G+V G YE +KH SPLQAA  ELEEEAHL  GTWHTL + ++    A KYS+  F+ +LVVDP V   PK +DD EFIE  RGVS++E   M+  G++S++S F  LM   KLR+LG
Sbjct:   96 QTNTLTLIKEFAPGREEVAHGVVAGMYEKNKHDSPLQAAKYELEEEAHLLGGTWHTLCEDDETTINADKYSSNEFYCWLVVDPYVTPTPKPMDDEEFIEIRRGVSMQECMRMVGRGELSIVSSFVVLMGARKLRQLG 232          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: A0A7S1ZSI2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZSI2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.430e-31
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 1
Query:    1 QTNTTTILKEYYPGMKRLMYGIVGGNYEPD---KHSSPLQAAACELEEEAHLHEGTWHTLM------KSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHI 417
            QT T T+++EY PG  R++YG+  G  E D    H  P QAA  ELEEE HL  GTWH L        S        KY+     PYLV+D      PK  DD E IE VR V+++EV  +I SG+M+++ G+A L+AI+KLR+LG I
Sbjct:  147 QTKTATLVREYNPGCHRILYGVAAGLIEDDAKHSHGDPKQAAIMELEEECHLSGGTWHCLTTPSSSSSSLPTSVPMDKYAVTNITPYLVIDASHVTNPKPCDDEEDIEIVRNVTIDEVLRLIRSGEMNLVGGWACLLAIEKLRDLGEI 294          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: A0A7S2RZZ7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RZZ7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.260e-30
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    4 TNTTTILKEYYPGMKRLMYGIVGGNYEPDKHSS-PLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHI 417
            T T TI++EY PG  +++ G+  G  E DKH S PL AA  ELEEE HL  GTW+ L K    +A   KY      PYLV+D      P+ LD+ E IE V GV+++E++ MI SGDM+++  +A+L+A+ KL+ELG I
Sbjct:   76 TKTATIVREYNPGCHQVLGGLAAGLIEDDKHGSDPLIAARHELEEECHLGGGTWYQLTKPGVAIA-MDKYVQTRVTPYLVIDAHKIDNPRPLDEEEDIEIVGGVTVDEIKNMIESGDMNLVGSWASLLALQKLKELGEI 213          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: A0A0G4H3V0_VITBC (Nudix hydrolase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3V0_VITBC)

HSP 1 Score: 113 bits (282), Expect = 2.260e-28
Identity = 62/139 (44.60%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 QTNTTTILKEYYPGMKRLMYGIVGGNYEPDKHSSPLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHI 417
            Q  TT   +EYYPG  +   G V G YE  KH SPL AA  ELEEEAHL  G W  L+    V+    KYS QIF+ +L +DP+   +P+ LDD E I   R V  + V      G  +V +  AAL+AI+KLRE+G +
Sbjct:   85 QKKTTIFAEEYYPGPNQWKKGFVAGLYERKKHESPLHAAKLELEEEAHLVGGKWINLINERGVM-DYEKYSDQIFYAFLCLDPVHTDDPRPLDDSEVIYLHRDVPAKAVLEGALHGHFTVTTSLAALLAIEKLREIGEL 222          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: A0A7S4PK06_GUITH (Hypothetical protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S4PK06_GUITH)

HSP 1 Score: 113 bits (283), Expect = 2.010e-27
Identity = 62/139 (44.60%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 QTNTTTILKEYYPGMKRLMYGIVGGNYEPDKHSSPLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHI 417
            +T T  +++EY PG   +  G+ GG +E  KH   LQAA  EL EEA L  GTW  L           KYS    HPYLV+D +    PK  DD E IE  +GV+LEE R  +  GDM   +    L+AIDKLR+LGHI
Sbjct:  226 RTKTCWLIREYCPGTHSIQSGVPGGLFEEKKHKDLLQAARDELNEEAGLMGGTWIALAPEG---IPQDKYSRNRLHPYLVIDCMRDPNPKPKDDDEIIEVEQGVALEEARRRVLEGDMPAPAAMVTLLAIDKLRQLGHI 361          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: A0A6U2S3A3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2S3A3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.180e-27
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 QTNTTTILKEYYPGMKRLMYGIVGGNYEPDKHS-SPLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHI 417
            +T T T+++EY PG  + ++G+  G  E DKH   P  AA  ELEEE HL  G W+ L  ++       KY       YLV+DP     P+ LD  E IE + GVS+ E+  MI SG M+++ G+A ++AI+KLRELG I
Sbjct:   88 KTKTATLVREYNPGCHKSLHGVAAGLIEEDKHQCDPEIAARHELEEECHLQGGRWYRLT-ADGATVPMDKYVVTEIAAYLVIDPETVSNPRPLDAEEDIEIISGVSVPEIFDMIRSGGMNLVGGWACMLAIEKLRELGEI 226          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: A0A482S980_9ARCH (NUDIX hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S980_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 5.490e-27
Identity = 57/136 (41.91%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   10 TTTILKEYYPGMKRLMYGIVGGNYEPDKHSSPLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVD--PIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELG 411
            TTT++KEY+PG  ++M G V G  E +KH+S LQAA  ELEEEAHL    W++L+ +E  +    KYS   F PYL +D  P+   +P  LDD E+I   R V+  E+  ++ SG ++V+S +  ++ + KL++LG
Sbjct:   31 TTTLVKEYHPGPNKVMLGAVAGMCENEKHTSILQAAQHELEEEAHLRTDHWYSLL-NEGAIMPFDKYSNNRFIPYLALDCEPVKSAKP--LDDEEYITIHRNVTYNEMMELMASGQINVVSTYTIMLGLKKLKDLG 163          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: A0A7S1BIB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIB0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.400e-26
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 1
Query:    1 QTNTTTILKEYYPGMKRLMYGIVGGNYEP-DKHSS--PLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDP----IVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHI 417
            +T T T++KEY PG  R++ G+  G  E  DKH    P+ A   ELEEE HL  G W++L++ +D      KYS   F  YLV+D         + + LDD E IE + GVS+ ++  MI  G+M+++ G+  L+A++KLRELG I
Sbjct:  161 RTKTATLIKEYNPGCMRIITGVAAGIIESGDKHDGGDPMVAGRFELEEECHLRNGRWYSLLE-DDTTVPHDKYSVTEFSAYLVLDADTIDSASEDVRALDDEEDIEIIHGVSVPKILEMIRKGEMNLVGGWTCLLALEKLRELGEI 305          
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Match: L1JN07_GUITC (Nudix hydrolase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JN07_GUITC)

HSP 1 Score: 101 bits (252), Expect = 4.920e-24
Identity = 56/125 (44.80%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   43 MKRLMYGIVGGNYEPDKHSSPLQAAACELEEEAHLHEGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEYVRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHI 417
            ++ +  G+ GG +E  KH   LQAA  EL EEA L  GTW  L           KYS    HPYLV+D +    PK  DD E IE  +GV+LEE R  +  GDM   +    L+AIDKLR+LGHI
Sbjct:   97 IREIQSGVPGGLFEEKKHKDLLQAARDELNEEAGLMGGTWIALAPEG---IPQDKYSRNRLHPYLVIDCMRDPNPKPKDDDEIIEVEQGVALEEARRRVLEGDMPAPAAMVTLLAIDKLRQLGHI 218          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197959.5537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G0V2_ECTSI8.310e-8385.00Nudix hydrolase domain-containing protein n=2 Tax=... [more]
D7G6B3_ECTSI2.470e-4352.55Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A7S1ZSI2_9STRA2.430e-3144.59Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2RZZ7_9STRA3.260e-3046.04Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A0G4H3V0_VITBC2.260e-2844.60Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S4PK06_GUITH2.010e-2744.60Hypothetical protein n=2 Tax=Geminigeraceae TaxID=... [more]
A0A6U2S3A3_9STRA2.180e-2742.14Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A482S980_9ARCH5.490e-2741.91NUDIX hydrolase n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A7S1BIB0_9STRA6.400e-2640.41Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
L1JN07_GUITC4.920e-2444.80Nudix hydrolase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197959contigH-elongata_contig197959:125..1047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.3
Seed ortholog evalue1.3e-64
Seed eggNOG ortholog2880.D7G0V2
EggNOG OGs2CFIT@1,2S4K6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-23_002190.1
Exons3
Model size423
Cds size423
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197959.5537.1prot_H-elongata_contig197959.5537.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197959 125..1047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930118.38749-CDS-H-elongata_contig197959:124..2231622930118.38749-CDS-H-elongata_contig197959:124..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197959 125..223 -
1691679287.7337716-CDS-H-elongata_contig197959:124..2231691679287.7337716-CDS-H-elongata_contig197959:124..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197959 125..223 -
1622930118.3990533-CDS-H-elongata_contig197959:557..7701622930118.3990533-CDS-H-elongata_contig197959:557..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197959 558..770 -
1691679287.7452238-CDS-H-elongata_contig197959:557..7701691679287.7452238-CDS-H-elongata_contig197959:557..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197959 558..770 -
1622930118.409322-CDS-H-elongata_contig197959:936..10471622930118.409322-CDS-H-elongata_contig197959:936..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197959 937..1047 -
1691679287.7553487-CDS-H-elongata_contig197959:936..10471691679287.7553487-CDS-H-elongata_contig197959:936..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197959 937..1047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197959.5537.1

>prot_H-elongata_contig197959.5537.1 ID=prot_H-elongata_contig197959.5537.1|Name=mRNA_H-elongata_contig197959.5537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
QTNTTTILKEYYPGMKRLMYGIVGGNYEPDKHSSPLQAAACELEEEAHLH
EGTWHTLMKSEDVVAGAGKYSTQIFHPYLVVDPIVKGEPKGLDDGEFIEY
VRGVSLEEVRAMIYSGDMSVISGFAALMAIDKLRELGHIL*
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mRNA from alignment at H-elongata_contig197959:125..1047-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197959.5537.1 ID=mRNA_H-elongata_contig197959.5537.1|Name=mRNA_H-elongata_contig197959.5537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=923bp|location=Sequence derived from alignment at H-elongata_contig197959:125..1047- (Himanthalia elongata Himel1 dioecious)
CAGACCAACACCACCACGATCTTGAAGGAATATTACCCGGGTATGAAACG CCTCATGTACGGGATCGTGGGAGGGAACTACGAGCCAGATAAGCATTCGT CGCCTCTGCAGGTGAGGTGCGTTTCGTCCGTCCGCCCGCCCGCCCTAAAT TTCGGTTTGTTGCAGCGAACTAAAAATATATATATAAATCCGTCCTTTCC CTCTATATATATACCAGTATTTAGTACTAAGTCAAAGAGTAATTTTGTGT ATCTGGTGAAAACGCACCCGCTCCTAGGCCGCCGCTTGCGAGCTGGAAGA AGAGGCCCATCTCCATGAGGGTACATGGCACACGCTCATGAAGAGTGAGG ACGTTGTGGCCGGCGCGGGCAAGTACTCGACCCAGATCTTCCACCCTTAC CTGGTGGTGGATCCCATCGTGAAAGGGGAGCCGAAGGGGCTGGACGACGG GGAGTTTATTGAATATGTCCGAGGCGTTTCTCTAGAGGAGGTGAGCGGGA AAAGAGGCTGGATTGAGCGTAATATGTTGCAATAGGAAGCGGACCCTGTC GATTTTGCTCGGTAAAAAAAGGGAAAACGAGGCCACCCCGTAGGATTCTA TGGGCTCGACTGAAAAAAACACACCCCAAGCGAGCAATGTCAGCTGGAGA CAGCTATAGACAGTGTTTGGCTTTTCCTGTTGACAGTCTCCCGCCTTCCT TCAAAACCGCCTCCGAGAGCGTGGTGCTTCCTTTTGGGGATCTTCCGTGT ATCTAATTCTCCCCTGCCCGGCCCACGCACGTCCACTTCCTTCCTCTGTT TTTAAATCCCACGTGGCTCGAAAGGTTCGCGCAATGATATACTCCGGGGA CATGAGCGTCATCTCTGGCTTCGCCGCGCTGATGGCGATCGACAAGCTCA GGGAGCTGGGTCACATTTTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig197959:125..1047-

>mRNA_H-elongata_contig197959.5537.1 ID=mRNA_H-elongata_contig197959.5537.1|Name=mRNA_H-elongata_contig197959.5537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig197959:125..1047- (Himanthalia elongata Himel1 dioecious)
CAGACCAACACCACCACGATCTTGAAGGAATATTACCCGGGTATGAAACG
CCTCATGTACGGGATCGTGGGAGGGAACTACGAGCCAGATAAGCATTCGT
CGCCTCTGCAGCAGACCAACACCACCACGATCTTGAAGGAATATTACCCG
GGTATGAAACGCCTCATGTACGGGATCGTGGGAGGGAACTACGAGCCAGA
TAAGCATTCGTCGCCTCTGCAGGCCGCCGCTTGCGAGCTGGAAGAAGAGG
CCCATCTCCATGAGGGTACATGGCACACGCTCATGAAGAGTGAGGACGTT
GTGGCCGGCGCGGGCAAGTACTCGACCCAGATCTTCCACCCTTACCTGGT
GGTGGATCCCATCGTGAAAGGGGAGCCGAAGGGGCTGGACGACGGGGAGT
TTATTGAATATGTCCGAGGCGTTTCTCTAGAGGAGGCCGCCGCTTGCGAG
CTGGAAGAAGAGGCCCATCTCCATGAGGGTACATGGCACACGCTCATGAA
GAGTGAGGACGTTGTGGCCGGCGCGGGCAAGTACTCGACCCAGATCTTCC
ACCCTTACCTGGTGGTGGATCCCATCGTGAAAGGGGAGCCGAAGGGGCTG
GACGACGGGGAGTTTATTGAATATGTCCGAGGCGTTTCTCTAGAGGAGGT
TCGCGCAATGATATACTCCGGGGACATGAGCGTCATCTCTGGCTTCGCCG
CGCTGATGGCGATCGACAAGCTCAGGGAGCTGGGTCACATTTTATGAGTT
CGCGCAATGATATACTCCGGGGACATGAGCGTCATCTCTGGCTTCGCCGC
GCTGATGGCGATCGACAAGCTCAGGGAGCTGGGTCACATTTTATGA
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