mRNA_H-elongata_contig197873.5534.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: D7FTL2_ECTSI (WW domain, G-patch, C2H2 zinc finger n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL2_ECTSI) HSP 1 Score: 205 bits (522), Expect = 2.280e-63 Identity = 111/142 (78.17%), Postives = 126/142 (88.73%), Query Frame = 1
Query: 1 DGLLAEGKASSM---SLTKFDDIDEEDKAGRKTRNFKRNETRGYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKRLEKAVR 417
DG+LA+G SS ++T FDDIDEEDKAGRKTR FKRNET+GY+D +SL+++S+DKPIGEENRGFRLL KMGWK GQGLGAKGDGI VPVVL +QVATLGLGK+ EDDRYTDEAARERKKLD+EV ET +MKAKRLEKAVR
Sbjct: 52 DGMLAKGTESSALSRTVTNFDDIDEEDKAGRKTRLFKRNETQGYIDTQSLDAASLDKPIGEENRGFRLLTKMGWKLGQGLGAKGDGITVPVVLGTQVATLGLGKSAEDDRYTDEAARERKKLDSEVVETADMKAKRLEKAVR 193
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A6H5JGS0_9PHAE (G-patch domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 8.030e-29 Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 205 MGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKRLEKAVR 417
MGWK GQGLGAKGDGI VPVVL +QVATLGLGK+ EDDRYTDEAARERKKLD+EV ET +MKAKRLEKAVR
Sbjct: 1 MGWKLGQGLGAKGDGITVPVVLGTQVATLGLGKSAEDDRYTDEAARERKKLDSEVVETADMKAKRLEKAVR 71
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A7S4DBH5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBH5_HETAK) HSP 1 Score: 113 bits (283), Expect = 2.930e-27 Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 10 LAEGKASSMSLTKFDDIDEEDKAGRKTRNFKRNETRGYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVA--TLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKRL 402
+ E +A S + D+D +D K R +K NET+GYLD+ + S+S DK I E NRGF+LL KMGWK+GQGLG G GI PV L A TLGLGK E + D AA++RKKLD EVEET+E KRL
Sbjct: 81 MVETRAGLGSFKQGYDLDFDDDMDDKMRVYKVNETKGYLDLSTFESASADKEIPENNRGFKLLVKMGWKRGQGLGKGGKGITAPVQLRPNEAGDTLGLGKAGEYEEKVDTAAKQRKKLDVEVEETDEEVTKRL 213
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A0L0HT99_SPIPD (G-patch domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HT99_SPIPD) HSP 1 Score: 80.1 bits (196), Expect = 5.090e-16 Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 1
Query: 100 KRNETRGYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTE 366
+R + GYLD+++L+ +++DK + E N G+RL+ KMGW +G+GLG +GDG PV +I + TLG+GK E D Y E+ +RK L++E
Sbjct: 78 RREQPSGYLDLDALDQTTMDKHLPESNIGYRLMLKMGWTKGKGLGREGDGRVDPVRIIVKEDTLGVGKGEELDTYHSESTSKRKMLESE 166
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: W7T5T6_9STRA (G patch domain-containing protein 8 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T5T6_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 6.360e-16 Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 1
Query: 10 LAEGKASSMSLTKFDDIDEEDKAGRKTRNFKRNETRGYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLG-AKGDGIRVPVVLISQ-VATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKRLEKAVRE 420
+ E +ASSM+L A + +FKR ET GYLD + + +++D P+ ++NRG +LL KMGWK+ LG A G+G+ VP+ L+ + GLGK E D +EA R R+ LD EV+ET +K +R KA +E
Sbjct: 47 ILETRASSMALP----------AATERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKE 175
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: UPI00125DD781 (G patch domain-containing protein 8 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125DD781) HSP 1 Score: 80.9 bits (198), Expect = 1.590e-15 Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 124 LDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKR 399
+D+E++ +S+DK + N GFRLL+KMGWK G+GLG GI P+ + A LGLGK EDD +T E +RK+LD EVEETEE+ KR
Sbjct: 48 VDLENVEQASLDKQLTSSNVGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDAKLGLGKQEEDDYFTSEENIQRKRLDIEVEETEELAKKR 138
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A0A9PR29_ARUDO (G-patch domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9PR29_ARUDO) HSP 1 Score: 78.2 bits (191), Expect = 1.590e-15 Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 124 LDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEE 384
LD E L +SV + N GFRLL+KMGWK G+GLG GI P+ + A LG+GK EDD +T E +RKKL+ E+EETEE
Sbjct: 40 LDTEGLEQASVHTQLSASNVGFRLLQKMGWKSGKGLGKNEQGILEPIRADIRDAKLGVGKQEEDDFFTSEENVQRKKLNIELEETEE 126
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A507EJX6_9FUNG (G-patch domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EJX6_9FUNG) HSP 1 Score: 80.9 bits (198), Expect = 3.300e-15 Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1
Query: 118 GYLDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTE--VEETEEMKAKR 399
GYLD+++L+ +++DK + E N G+RL+ KMGW +G+GLG +GDG PV +I + TLG+GK E D Y E+ +RK L++E EET+E K R
Sbjct: 61 GYLDLDALDQTTMDKHLPESNVGYRLMLKMGWTKGKGLGREGDGRVDPVRIIVKKDTLGVGKGEELDTYHSESTSKRKMLESEKIAEETQEEKTAR 156
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: UPI001FB108A5 (G patch domain-containing protein 8 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB108A5) HSP 1 Score: 78.2 bits (191), Expect = 1.750e-14 Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 124 LDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEEMKAKR 399
+D++++ +S+D + N GFRLL+KMGWK G+GLG GI P+ + A LG+GK EDD YT E +RKKLD E+EETEE+ KR
Sbjct: 58 VDLDNVEQASLDTQLSSSNIGFRLLQKMGWK-GKGLGKDEQGITEPIRSGMRDAKLGVGKQEEDDFYTAEENIQRKKLDVELEETEEIAKKR 148
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Match: A0A3B6AQA0_WHEAT (G-patch domain-containing protein n=12 Tax=Triticeae TaxID=147389 RepID=A0A3B6AQA0_WHEAT) HSP 1 Score: 78.2 bits (191), Expect = 1.770e-14 Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 124 LDIESLNSSSVDKPIGEENRGFRLLKKMGWKQGQGLGAKGDGIRVPVVLISQVATLGLGKTTEDDRYTDEAARERKKLDTEVEETEE 384
LD E L +SVD + N GFRLL+KMGWK G+GLG GI P+ + A LG+GK +DD +T E +RK+L+ E+EETEE
Sbjct: 56 LDTEGLEQASVDTQLASSNVGFRLLQKMGWKSGKGLGKNEQGILEPIKAGIRDAKLGVGKQEQDDFFTAEDNVQRKRLNVELEETEE 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197873.5534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197873.5534.1 >prot_H-elongata_contig197873.5534.1 ID=prot_H-elongata_contig197873.5534.1|Name=mRNA_H-elongata_contig197873.5534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp DGLLAEGKASSMSLTKFDDIDEEDKAGRKTRNFKRNETRGYLDIESLNSSback to top mRNA from alignment at H-elongata_contig197873:1..932- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197873.5534.1 ID=mRNA_H-elongata_contig197873.5534.1|Name=mRNA_H-elongata_contig197873.5534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig197873:1..932- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197873:1..932- >mRNA_H-elongata_contig197873.5534.1 ID=mRNA_H-elongata_contig197873.5534.1|Name=mRNA_H-elongata_contig197873.5534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig197873:1..932- (Himanthalia elongata Himel1 dioecious)back to top |