mRNA_H-elongata_contig19778.5531.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.100e-46 Identity = 104/255 (40.78%), Postives = 154/255 (60.39%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
++++ C+A GCDVIGLQ T+R G IA GY + +SG + K K+G H VG+AIK+ + + G + +E IS RL+K RL I ++ VTF V YAPTE V K + TA ++ + V +R++ V L DANA TG+ G +A+ VLGAYGRD+ N NG+R+ +N+ ++ NT++ P G+ + FQS+N+GK K L++IL +Q DR+ VR V+ + +SDHNLV VR+
Sbjct: 2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGGCCDAK--VLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE) HSP 1 Score: 169 bits (428), Expect = 5.330e-46 Identity = 104/255 (40.78%), Postives = 156/255 (61.18%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
++++ C+A GCDVIGLQ T+R G IA GY + +SG + K K+G H VG+AIK+ + + G + +E IS RL+K RL I ++ VTF V YAPTE V K + TAP++ + V +R++ V L DANA TG+ G +A+ ++GAYGRD+ N NG+R+L +N+L++ +T + R G+ + FQS+N+GK K L++IL +Q DR+ VR V+ + +SDHNLV VR+
Sbjct: 2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTAPDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTSTCF-----RKCGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 247
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 166 bits (420), Expect = 6.150e-46 Identity = 102/255 (40.00%), Postives = 153/255 (60.00%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
++++ C+A GCDVIGLQ T+R G +A GY + +SG + K K+G H VG+AIK+ + + G +E I+ RL+K RL I ++ VTF V YAPTE V K + TA + + V +R++ V L DANA TG+ G +A+ ++GAYGRD+ N NG+R+L N+L++ NT++ P G+ + FQS+N+GK K L++IL +Q DR+ VR V+ + +SDHNLV VR+
Sbjct: 2 TVMQLCSATGCDVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.580e-45 Identity = 103/255 (40.39%), Postives = 157/255 (61.57%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTERQ------KAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
++++ C+A GCDVIGLQ T+RAG IA GY + +SG + K K+G H VG+AIK+ + + G + +E IS RL+K RL I ++ VTF V YAPTE V + K + TA ++ + V +R++ V L DANA TG+ +G +A+ ++GAYGRD+ N NG+R+L +N+L++ NT++ P G+ + FQS+N+GK K L++I +Q DR+ VR V+ + +SDH LV VR+
Sbjct: 199 TVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFIFMRQADRRFVRNVSVKRVDF--KDSDHKLVLTTVRL 446
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.740e-45 Identity = 105/255 (41.18%), Postives = 157/255 (61.57%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
++++ C+A GCDVIGLQ T+R G IA GY + +SG + K K+G H VG+AIK+ + + G + +E IS RL+K RL I ++ VTF V YAPTE V K + TA ++ + V +R++ V L DANA TG+ G +A+ ++GAYGRD+ N NG+R+L +N+L++ NT++ P G+ + FQS+N+GK K L++IL +QTDR+ VR V+ + +SDHNLV VR+
Sbjct: 2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.610e-45 Identity = 103/255 (40.39%), Postives = 154/255 (60.39%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
++++ C+A GCDV GLQ T+R G IA GY + +SG + K K+G H VG+AIK+ + + G + +E IS RL+K RL I ++ VTF + YAPTE V K + TA ++ + V +R++ V L DANA TG+ G +A+ ++GAYGRD+ N NG+R+L +N+L++ NT++ P G + FQS+N GK K L++IL +QTDR+ VR V+ + +SDHNLV VR+
Sbjct: 2 TVMQICSATGCDVTGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGAQHTFQSSNTGKEKYRLDFILMRQTDRRFVRDVSVKRVDF--KDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 167 bits (422), Expect = 2.940e-45 Identity = 102/255 (40.00%), Postives = 154/255 (60.39%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
++++ C+A GCDVIGLQ T+RAG IA GY + +SG + K K+G H VG+ IK+ + + G + +E I RL+K RL I ++ V F V YAPTE V K + TA ++ + V +R++ V L DANA TG+ G +A+ ++GAYGRD+ N NG+R+L +N+L++ NT++ P G+ + FQS+N+GK K L++IL +Q DR+ VR V+ + +SDHNLV VR+
Sbjct: 105 TVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 352
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.100e-44 Identity = 104/255 (40.78%), Postives = 156/255 (61.18%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
++++ C+A GCDVIGLQ T+R G IA GY + +SG + K K+G H VG+AIK+ + + G + +E IS RL+K RL I ++ VTF V YAPTE V K + TA ++ + V +R++ V L DANA TG+ G +A+ ++GAYGRD+ N NG+R+L +N+L++ NT++ P G+ + FQS+N+GK K L++IL +Q DR+ VR V+ + +SDHNLV VR+
Sbjct: 681 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 928
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.130e-44 Identity = 105/254 (41.34%), Postives = 156/254 (61.42%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVR 750
++++ CAA CDVIGLQ T+RAG I GY + +SG + K K+G H VG+AIK+ + ++ G +E IS RL+K RL I ++ VTF V YAPTE K + TA ++ + V +R++ V L DANA TG+ G +A+ ++GAYGRD+ N NG+R+L +N+L+++NT++ P G+ + FQS+N+GK K L++IL +QTDR+LVR N + +SDHNLV+ VR
Sbjct: 2 TVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTP---KGGVQHTFQSSNKGKEKHRLDFILMRQTDRRLVR--NASVKRVDFKDSDHNLVHTTVR 248
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.160e-44 Identity = 105/254 (41.34%), Postives = 156/254 (61.42%), Query Frame = 1
Query: 13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVR 750
++++ CAA CDVIGLQ T+RAG I GY + +SG + K K+G H VG+AIK+ + ++ G +E IS RL+K RL I ++ VTF V YAPTE K + TA ++ + V +R++ V L DANA TG+ G +A+ ++GAYGRD+ N NG+R+L +N+L+++NT++ P G+ + FQS+N+GK K L++IL +QTDR+LVR N + +SDHNLV+ VR
Sbjct: 114 TVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTP---KGGVQHTFQSSNKGKEKHRLDFILMRQTDRRLVR--NASVKRVDFKDSDHNLVHTTVR 360 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19778.5531.1 >prot_H-elongata_contig19778.5531.1 ID=prot_H-elongata_contig19778.5531.1|Name=mRNA_H-elongata_contig19778.5531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp GYIDSLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKback to top mRNA from alignment at H-elongata_contig19778:830..1582- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19778.5531.1 ID=mRNA_H-elongata_contig19778.5531.1|Name=mRNA_H-elongata_contig19778.5531.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig19778:830..1582- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19778:830..1582- >mRNA_H-elongata_contig19778.5531.1 ID=mRNA_H-elongata_contig19778.5531.1|Name=mRNA_H-elongata_contig19778.5531.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig19778:830..1582- (Himanthalia elongata Himel1 dioecious)back to top |