mRNA_H-elongata_contig19778.5531.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19778.5531.1
Unique NamemRNA_H-elongata_contig19778.5531.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.100e-46
Identity = 104/255 (40.78%), Postives = 154/255 (60.39%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
            ++++ C+A GCDVIGLQ T+R G   IA  GY + +SG  +  K K+G H VG+AIK+ +  + G +   +E IS RL+K RL I ++  VTF V YAPTE V          K  + TA ++ +  V +R++ V L DANA TG+   G  +A+  VLGAYGRD+ N NG+R+     +N+ ++ NT++  P     G+ + FQS+N+GK K  L++IL +Q DR+ VR V+ +       +SDHNLV   VR+
Sbjct:    2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGGCCDAK--VLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 5.330e-46
Identity = 104/255 (40.78%), Postives = 156/255 (61.18%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
            ++++ C+A GCDVIGLQ T+R G   IA  GY + +SG  +  K K+G H VG+AIK+ +  + G +   +E IS RL+K RL I ++  VTF V YAPTE V          K  + TAP++ +  V +R++ V L DANA TG+   G  +A+  ++GAYGRD+ N NG+R+L    +N+L++ +T +     R  G+ + FQS+N+GK K  L++IL +Q DR+ VR V+ +       +SDHNLV   VR+
Sbjct:    2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTAPDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTSTCF-----RKCGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 247          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 6.150e-46
Identity = 102/255 (40.00%), Postives = 153/255 (60.00%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
            ++++ C+A GCDVIGLQ T+R G   +A  GY + +SG  +  K K+G H VG+AIK+ +  + G     +E I+ RL+K RL I ++  VTF V YAPTE V          K  + TA +  +  V +R++ V L DANA TG+   G  +A+  ++GAYGRD+ N NG+R+L     N+L++ NT++  P     G+ + FQS+N+GK K  L++IL +Q DR+ VR V+ +       +SDHNLV   VR+
Sbjct:    2 TVMQLCSATGCDVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.580e-45
Identity = 103/255 (40.39%), Postives = 157/255 (61.57%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTERQ------KAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
            ++++ C+A GCDVIGLQ T+RAG   IA  GY + +SG  +  K K+G H VG+AIK+ +  + G +   +E IS RL+K RL I ++  VTF V YAPTE V   +      K  + TA ++ +  V +R++ V L DANA TG+  +G  +A+  ++GAYGRD+ N NG+R+L    +N+L++ NT++  P     G+ + FQS+N+GK K  L++I  +Q DR+ VR V+ +       +SDH LV   VR+
Sbjct:  199 TVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFIFMRQADRRFVRNVSVKRVDF--KDSDHKLVLTTVRL 446          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.740e-45
Identity = 105/255 (41.18%), Postives = 157/255 (61.57%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
            ++++ C+A GCDVIGLQ T+R G   IA  GY + +SG  +  K K+G H VG+AIK+ +  + G +   +E IS RL+K RL I ++  VTF V YAPTE V          K  + TA ++ +  V +R++ V L DANA TG+   G  +A+  ++GAYGRD+ N NG+R+L    +N+L++ NT++  P     G+ + FQS+N+GK K  L++IL +QTDR+ VR V+ +       +SDHNLV   VR+
Sbjct:    2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.610e-45
Identity = 103/255 (40.39%), Postives = 154/255 (60.39%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
            ++++ C+A GCDV GLQ T+R G   IA  GY + +SG  +  K K+G H VG+AIK+ +  + G +   +E IS RL+K RL I ++  VTF + YAPTE V          K  + TA ++ +  V +R++ V L DANA TG+   G  +A+  ++GAYGRD+ N NG+R+L    +N+L++ NT++  P     G  + FQS+N GK K  L++IL +QTDR+ VR V+ +       +SDHNLV   VR+
Sbjct:    2 TVMQICSATGCDVTGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGAQHTFQSSNTGKEKYRLDFILMRQTDRRFVRDVSVKRVDF--KDSDHNLVLTTVRL 249          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 2.940e-45
Identity = 102/255 (40.00%), Postives = 154/255 (60.39%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
            ++++ C+A GCDVIGLQ T+RAG   IA  GY + +SG  +  K K+G H VG+ IK+ +  + G +   +E I  RL+K RL I ++  V F V YAPTE V          K  + TA ++ +  V +R++ V L DANA TG+   G  +A+  ++GAYGRD+ N NG+R+L    +N+L++ NT++  P     G+ + FQS+N+GK K  L++IL +Q DR+ VR V+ +       +SDHNLV   VR+
Sbjct:  105 TVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 352          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.100e-44
Identity = 104/255 (40.78%), Postives = 156/255 (61.18%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVRI 753
            ++++ C+A GCDVIGLQ T+R G   IA  GY + +SG  +  K K+G H VG+AIK+ +  + G +   +E IS RL+K RL I ++  VTF V YAPTE V          K  + TA ++ +  V +R++ V L DANA TG+   G  +A+  ++GAYGRD+ N NG+R+L    +N+L++ NT++  P     G+ + FQS+N+GK K  L++IL +Q DR+ VR V+ +       +SDHNLV   VR+
Sbjct:  681 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTP---KGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDF--KDSDHNLVLTTVRL 928          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.130e-44
Identity = 105/254 (41.34%), Postives = 156/254 (61.42%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVR 750
            ++++ CAA  CDVIGLQ T+RAG   I   GY + +SG  +  K K+G H VG+AIK+ + ++ G     +E IS RL+K RL I ++  VTF V YAPTE            K  + TA ++ +  V +R++ V L DANA TG+   G  +A+  ++GAYGRD+ N NG+R+L    +N+L+++NT++  P     G+ + FQS+N+GK K  L++IL +QTDR+LVR  N     +   +SDHNLV+  VR
Sbjct:    2 TVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTP---KGGVQHTFQSSNKGKEKHRLDFILMRQTDRRLVR--NASVKRVDFKDSDHNLVHTTVR 248          
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.160e-44
Identity = 105/254 (41.34%), Postives = 156/254 (61.42%), Query Frame = 1
Query:   13 SLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGKKGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSI-KSILVTFFVVYAPTEEVTE------RQKAKYITAPNSTVFSVPAREY-VFLNDANATTGKMSQGGKEAESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKFQSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVR 750
            ++++ CAA  CDVIGLQ T+RAG   I   GY + +SG  +  K K+G H VG+AIK+ + ++ G     +E IS RL+K RL I ++  VTF V YAPTE            K  + TA ++ +  V +R++ V L DANA TG+   G  +A+  ++GAYGRD+ N NG+R+L    +N+L+++NT++  P     G+ + FQS+N+GK K  L++IL +QTDR+LVR  N     +   +SDHNLV+  VR
Sbjct:  114 TVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTP---KGGVQHTFQSSNKGKEKHRLDFILMRQTDRRLVR--NASVKRVDFKDSDHNLVHTTVR 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19778.5531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBZ6_9PHAE1.100e-4640.78Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JM04_9PHAE5.330e-4640.78Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K259_9PHAE6.150e-4640.00Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE1.580e-4540.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7A7_9PHAE1.740e-4541.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSV0_9PHAE2.610e-4540.39Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KV75_9PHAE2.940e-4540.00Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K1H7_9PHAE1.100e-4440.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE1.130e-4441.34Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE1.160e-4441.34Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19778contigH-elongata_contig19778:830..1582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score67.0
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog59538.XP_005980196.1
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs3A2BJ@33154,3BR1K@33208,3D7JS@33213,3JQE2@40674,48GGU@7711,49DSU@7742,KOG1075@1,KOG1075@2759,KOG4776@1,KOG4776@2759
COG Functional cat.K
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.9159384-CDS-H-elongata_contig19778:829..15821622930117.9159384-CDS-H-elongata_contig19778:829..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19778 830..1582 -
1691679287.515872-CDS-H-elongata_contig19778:829..15821691679287.515872-CDS-H-elongata_contig19778:829..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19778 830..1582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19778.5531.1prot_H-elongata_contig19778.5531.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19778 830..1582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19778.5531.1

>prot_H-elongata_contig19778.5531.1 ID=prot_H-elongata_contig19778.5531.1|Name=mRNA_H-elongata_contig19778.5531.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
GYIDSLLRPCAARGCDVIGLQTTKRAGASEIAVSGYRVYFSGYCSEIKGK
KGQHWVGLAIKKELVNNTGNDDIAIESISARLLKARLSIKSILVTFFVVY
APTEEVTERQKAKYITAPNSTVFSVPAREYVFLNDANATTGKMSQGGKEA
ESTVLGAYGRDVDNENGKRMLSFVENNKLTILNTFYCLPLPRPNGLFYKF
QSANRGKWKAGLEYILTKQTDRKLVRIVNFRPPPLASSESDHNLVYAKVR
I
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mRNA from alignment at H-elongata_contig19778:830..1582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19778.5531.1 ID=mRNA_H-elongata_contig19778.5531.1|Name=mRNA_H-elongata_contig19778.5531.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig19778:830..1582- (Himanthalia elongata Himel1 dioecious)
GGTTATATCGACTCCCTCCTGAGACCCTGTGCTGCAAGGGGTTGTGATGT TATTGGACTGCAGACAACAAAACGGGCCGGAGCATCTGAAATAGCTGTAT CTGGGTACCGGGTCTACTTCAGTGGTTACTGCAGCGAGATCAAAGGAAAA AAGGGGCAACATTGGGTGGGACTAGCGATAAAAAAGGAGCTCGTTAACAA TACTGGCAATGACGACATCGCGATCGAGAGCATCAGCGCACGTCTCCTGA AGGCTCGACTATCGATTAAATCAATTTTGGTTACGTTTTTTGTAGTCTAC GCTCCGACCGAAGAAGTGACGGAGAGACAGAAGGCCAAGTACATCACAGC GCCAAACAGCACCGTATTTTCAGTGCCCGCTCGGGAATACGTCTTTTTGA ACGACGCGAACGCCACGACAGGGAAAATGAGTCAGGGAGGCAAGGAAGCA GAAAGCACGGTTTTGGGTGCATATGGCCGAGACGTGGACAACGAAAACGG CAAACGAATGCTGAGTTTCGTAGAAAACAACAAGCTCACTATTCTAAACA CCTTTTATTGCCTTCCCCTCCCCCGCCCCAATGGATTATTCTACAAATTC CAAAGTGCCAACCGTGGCAAGTGGAAAGCAGGTCTGGAGTATATCCTGAC AAAGCAGACAGACCGAAAATTGGTCCGCATCGTCAATTTCCGCCCACCTC CTCTAGCGTCGTCAGAATCGGATCACAATCTCGTGTACGCAAAAGTCCGC ATC
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Coding sequence (CDS) from alignment at H-elongata_contig19778:830..1582-

>mRNA_H-elongata_contig19778.5531.1 ID=mRNA_H-elongata_contig19778.5531.1|Name=mRNA_H-elongata_contig19778.5531.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig19778:830..1582- (Himanthalia elongata Himel1 dioecious)
GGTTATATCGACTCCCTCCTGAGACCCTGTGCTGCAAGGGGTTGTGATGT
TATTGGACTGCAGACAACAAAACGGGCCGGAGCATCTGAAATAGCTGTAT
CTGGGTACCGGGTCTACTTCAGTGGTTACTGCAGCGAGATCAAAGGAAAA
AAGGGGCAACATTGGGTGGGACTAGCGATAAAAAAGGAGCTCGTTAACAA
TACTGGCAATGACGACATCGCGATCGAGAGCATCAGCGCACGTCTCCTGA
AGGCTCGACTATCGATTAAATCAATTTTGGTTACGTTTTTTGTAGTCTAC
GCTCCGACCGAAGAAGTGACGGAGAGACAGAAGGCCAAGTACATCACAGC
GCCAAACAGCACCGTATTTTCAGTGCCCGCTCGGGAATACGTCTTTTTGA
ACGACGCGAACGCCACGACAGGGAAAATGAGTCAGGGAGGCAAGGAAGCA
GAAAGCACGGTTTTGGGTGCATATGGCCGAGACGTGGACAACGAAAACGG
CAAACGAATGCTGAGTTTCGTAGAAAACAACAAGCTCACTATTCTAAACA
CCTTTTATTGCCTTCCCCTCCCCCGCCCCAATGGATTATTCTACAAATTC
CAAAGTGCCAACCGTGGCAAGTGGAAAGCAGGTCTGGAGTATATCCTGAC
AAAGCAGACAGACCGAAAATTGGTCCGCATCGTCAATTTCCGCCCACCTC
CTCTAGCGTCGTCAGAATCGGATCACAATCTCGTGTACGCAAAAGTCCGC
ATCGGTTATATCGACTCCCTCCTGAGACCCTGTGCTGCAAGGGGTTGTGA
TGTTATTGGACTGCAGACAACAAAACGGGCCGGAGCATCTGAAATAGCTG
TATCTGGGTACCGGGTCTACTTCAGTGGTTACTGCAGCGAGATCAAAGGA
AAAAAGGGGCAACATTGGGTGGGACTAGCGATAAAAAAGGAGCTCGTTAA
CAATACTGGCAATGACGACATCGCGATCGAGAGCATCAGCGCACGTCTCC
TGAAGGCTCGACTATCGATTAAATCAATTTTGGTTACGTTTTTTGTAGTC
TACGCTCCGACCGAAGAAGTGACGGAGAGACAGAAGGCCAAGTACATCAC
AGCGCCAAACAGCACCGTATTTTCAGTGCCCGCTCGGGAATACGTCTTTT
TGAACGACGCGAACGCCACGACAGGGAAAATGAGTCAGGGAGGCAAGGAA
GCAGAAAGCACGGTTTTGGGTGCATATGGCCGAGACGTGGACAACGAAAA
CGGCAAACGAATGCTGAGTTTCGTAGAAAACAACAAGCTCACTATTCTAA
ACACCTTTTATTGCCTTCCCCTCCCCCGCCCCAATGGATTATTCTACAAA
TTCCAAAGTGCCAACCGTGGCAAGTGGAAAGCAGGTCTGGAGTATATCCT
GACAAAGCAGACAGACCGAAAATTGGTCCGCATCGTCAATTTCCGCCCAC
CTCCTCTAGCGTCGTCAGAATCGGATCACAATCTCGTGTACGCAAAAGTC
CGCATC
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