mRNA_H-elongata_contig197779.5530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197779.5530.1
Unique NamemRNA_H-elongata_contig197779.5530.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.990e-18
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    4 DRFAAELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            + F A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct:   27 EEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 123
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.430e-17
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct:   95 ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 187
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.380e-17
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P RKA+G++MW +T +RP
Sbjct: 1060 ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVRKAIGSMMWVSTFSRP 1152
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.590e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct:  238 ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 330
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.800e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct:  491 ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 583
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.910e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct:  951 ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 1043
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.930e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct: 1330 ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 1422
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.940e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct: 1350 ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 1442
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.940e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct: 1493 ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 1585
[Close]
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.250e-16
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVEKFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTATMTRP 315
            A L +KF  K++G+ +++ GC I RD     L+I Q  Y++SMVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RP
Sbjct:  586 ASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRP 678
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197779.5530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPT0_9PHAE6.990e-1841.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRS6_9PHAE2.430e-1742.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE8.380e-1743.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE2.590e-1642.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T2_9PHAE2.800e-1642.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE2.910e-1642.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.930e-1642.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.940e-1642.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.940e-1642.00Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K164_9PHAE5.250e-1642.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197779contigH-elongata_contig197779:566..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.2
Seed ortholog evalue8.3e-11
Seed eggNOG ortholog202698.XP_007378181.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.8661385-CDS-H-elongata_contig197779:565..8801622930117.8661385-CDS-H-elongata_contig197779:565..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197779 566..880 +
1691679287.5042052-CDS-H-elongata_contig197779:565..8801691679287.5042052-CDS-H-elongata_contig197779:565..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197779 566..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197779.5530.1prot_H-elongata_contig197779.5530.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197779 566..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197779.5530.1

>prot_H-elongata_contig197779.5530.1 ID=prot_H-elongata_contig197779.5530.1|Name=mRNA_H-elongata_contig197779.5530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MDRFAAELRQKFKLKDMGDARYYMGCPITRDRKVRELKIDQHLYVESMVE
KFDVKKRSKIPATSGVPTLSKADEPRNPEEKEEMIKFPYRKAVGALMWTA
TMTRP
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mRNA from alignment at H-elongata_contig197779:566..880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197779.5530.1 ID=mRNA_H-elongata_contig197779.5530.1|Name=mRNA_H-elongata_contig197779.5530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig197779:566..880+ (Himanthalia elongata Himel1 dioecious)
ATGGATAGATTCGCGGCTGAGCTTAGACAAAAGTTCAAATTGAAGGACAT
GGGTGACGCCAGGTACTACATGGGCTGTCCCATTACTAGGGACCGCAAGG
TGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTGGAA
AAGTTCGACGTCAAGAAGCGAAGCAAGATACCGGCTACGTCGGGGGTTCC
AACACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGGAAA
TGATAAAGTTTCCATACAGGAAAGCAGTGGGAGCGCTTATGTGGACGGCG
ACGATGACACGGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig197779:566..880+

>mRNA_H-elongata_contig197779.5530.1 ID=mRNA_H-elongata_contig197779.5530.1|Name=mRNA_H-elongata_contig197779.5530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig197779:566..880+ (Himanthalia elongata Himel1 dioecious)
ATGGATAGATTCGCGGCTGAGCTTAGACAAAAGTTCAAATTGAAGGACAT
GGGTGACGCCAGGTACTACATGGGCTGTCCCATTACTAGGGACCGCAAGG
TGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTGGAA
AAGTTCGACGTCAAGAAGCGAAGCAAGATACCGGCTACGTCGGGGGTTCC
AACACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGGAAA
TGATAAAGTTTCCATACAGGAAAGCAGTGGGAGCGCTTATGTGGACGGCG
ACGATGACACGGCCGATGGATAGATTCGCGGCTGAGCTTAGACAAAAGTT
CAAATTGAAGGACATGGGTGACGCCAGGTACTACATGGGCTGTCCCATTA
CTAGGGACCGCAAGGTGCGCGAGCTGAAGATCGACCAACACTTGTACGTG
GAGTCGATGGTGGAAAAGTTCGACGTCAAGAAGCGAAGCAAGATACCGGC
TACGTCGGGGGTTCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCGG
AGGAGAAGGAGGAAATGATAAAGTTTCCATACAGGAAAGCAGTGGGAGCG
CTTATGTGGACGGCGACGATGACACGGCCG
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